메뉴 건너뛰기




Volumn 92, Issue 2, 2011, Pages 402-411

A complex hepatitis B virus (X/C) recombinant is common in Long An county, Guangxi and may have originated in southern China

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHINA; GENE SEQUENCE; GENOTYPE; HEPATITIS B VIRUS; LAOS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PHYLOGEOGRAPHY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; VIET NAM; VIRUS RECOMBINANT; VIRUS STRAIN;

EID: 79251494131     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.026666-0     Document Type: Article
Times cited : (25)

References (44)
  • 2
    • 0036330525 scopus 로고    scopus 로고
    • Genotype H: A new Amerindian genotype of hepatitis B virus revealed in Central America
    • Arauz-Ruiz, P., Norder, H., Robertson, B. H. & Magnius, L. O. (2002). Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 83, 2059-2073.
    • (2002) J Gen Virol , vol.83 , pp. 2059-2073
    • Arauz-Ruiz, P.1    Norder, H.2    Robertson, B.H.3    Magnius, L.O.4
  • 3
    • 0029940859 scopus 로고    scopus 로고
    • Recombination between sequences of hepatitis B virus from different genotypes
    • Bollyky, P. L., Rambaut, A., Harvey, P. H. & Holmes, E. C. (1996). Recombination between sequences of hepatitis B virus from different genotypes. J Mol Evol 42, 97-102.
    • (1996) J Mol Evol , vol.42 , pp. 97-102
    • Bollyky, P.L.1    Rambaut, A.2    Harvey, P.H.3    Holmes, E.C.4
  • 4
    • 39149121860 scopus 로고    scopus 로고
    • Hepatitis B virus genotypes and resistance mutations in patients under long term lamivudine therapy: Characterization of genotype G in Brazil
    • Bottecchia, M., Souto, F. J. D., Ó, K. M. R., Amendola, M., Brandão, C. E., Niel, C. & Gomes, S. A. (2008). Hepatitis B virus genotypes and resistance mutations in patients under long term lamivudine therapy: characterization of genotype G in Brazil. BMC Microbiol 8, 11.
    • (2008) BMC Microbiol , vol.8 , pp. 11
    • Bottecchia, M.1    Souto, F.J.D.2    Ó, K.M.R.3    Amendola, M.4    Brandão, C.E.5    Niel, C.6    Gomes, S.A.7
  • 5
    • 0033984724 scopus 로고    scopus 로고
    • Relationships within and between genotypes of hepatitis B virus at points across the genome: Footprints of recombination in certain isolates
    • Bowyer, S. M. & Sim, J. G. (2000). Relationships within and between genotypes of hepatitis B virus at points across the genome: footprints of recombination in certain isolates. J Gen Virol 81, 379-392.
    • (2000) J Gen Virol , vol.81 , pp. 379-392
    • Bowyer, S.M.1    Sim, J.G.2
  • 6
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J. & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7, 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 7
    • 50649109431 scopus 로고    scopus 로고
    • HBV A1762T, G1764A mutations are a valuable biomarker for identifying a subset of male HBsAg carriers at extremely high risk of hepatocellular carcinoma: A prospective study
    • & other authors
    • Fang, Z. L., Sabin, C. A., Dong, B. Q., Ge, L. Y., Wei, S. C., Chen, Q. Y., Fang, K. X., Yang, J. Y., Wang, X. Y. & other authors (2008a). HBV A1762T, G1764A mutations are a valuable biomarker for identifying a subset of male HBsAg carriers at extremely high risk of hepatocellular carcinoma: a prospective study. Am J Gastroenterol 103, 2254-2262.
    • (2008) Am J Gastroenterol , vol.103 , pp. 2254-2262
    • Fang, Z.L.1    Sabin, C.A.2    Dong, B.Q.3    Ge, L.Y.4    Wei, S.C.5    Chen, Q.Y.6    Fang, K.X.7    Yang, J.Y.8    Wang, X.Y.9
  • 8
    • 56349099754 scopus 로고    scopus 로고
    • Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: A matched nested case-control study
    • & other authors
    • Fang, Z. L., Sabin, C. A., Dong, B. Q., Wei, S. C., Chen, Q. Y., Fang, K. X., Yang, J. Y., Huang, J., Wang, X. Y. & other authors (2008b). Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: a matched nested case-control study. J Gen Virol 89, 2882-2890.
    • (2008) J Gen Virol , vol.89 , pp. 2882-2890
    • Fang, Z.L.1    Sabin, C.A.2    Dong, B.Q.3    Wei, S.C.4    Chen, Q.Y.5    Fang, K.X.6    Yang, J.Y.7    Huang, J.8    Wang, X.Y.9
  • 9
    • 58149293574 scopus 로고    scopus 로고
    • The association of HBV core promoter double mutations (A1762T and G1764A) with viral load differs between HBeAg positive and anti-HBe positive individuals: A longitudinal analysis
    • Fang, Z. L., Sabin, C. A., Dong, B. Q., Wei, S. C., Chen, Q. Y., Fang, K. X., Yang, J. Y., Wang, X. Y. & Harrison, T. J. (2009). The association of HBV core promoter double mutations (A1762T and G1764A) with viral load differs between HBeAg positive and anti-HBe positive individuals: a longitudinal analysis. J Hepatol 50, 273-280.
    • (2009) J Hepatol , vol.50 , pp. 273-280
    • Fang, Z.L.1    Sabin, C.A.2    Dong, B.Q.3    Wei, S.C.4    Chen, Q.Y.5    Fang, K.X.6    Yang, J.Y.7    Wang, X.Y.8    Harrison, T.J.9
  • 10
    • 0036102294 scopus 로고    scopus 로고
    • A revised evolutionary history of hepatitis B virus (HBV)
    • Fares, M. A. & Holmes, E. C. (2002). A revised evolutionary history of hepatitis B virus (HBV). J Mol Evol 54, 807-814.
    • (2002) J Mol Evol , vol.54 , pp. 807-814
    • Fares, M.A.1    Holmes, E.C.2
  • 11
    • 0026726172 scopus 로고
    • Mutations on free and integrated hepatitis B virus DNA in a hepatocellular carcinoma: Footprints of homologous recombination
    • Georgi-Geisberger, P., Berns, H., Loncarevic, I. F., Yu, Z. Y., Tang, Z. Y., Zentgraf, H. & Schroder, C. H. (1992). Mutations on free and integrated hepatitis B virus DNA in a hepatocellular carcinoma: footprints of homologous recombination. Oncology 49, 386-395.
    • (1992) Oncology , vol.49 , pp. 386-395
    • Georgi-Geisberger, P.1    Berns, H.2    Loncarevic, I.F.3    Yu, Z.Y.4    Tang, Z.Y.5    Zentgraf, H.6    Schroder, C.H.7
  • 12
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs, M. J., Armstrong, J. S. & Gibbs, A. J. (2000). Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16, 573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 13
    • 0029082116 scopus 로고
    • A novel method for efficient amplification of whole hepatitis B virus genomes permits rapid functional analysis and reveals deletion mutants in immunosuppressed patients
    • Gunther, S., Li, B. C., Miska, S., Kruger, D. H., Meisel, H. & Will, H. (1995). A novel method for efficient amplification of whole hepatitis B virus genomes permits rapid functional analysis and reveals deletion mutants in immunosuppressed patients. J Virol 69, 5437-5444.
    • (1995) J Virol , vol.69 , pp. 5437-5444
    • Gunther, S.1    Li, B.C.2    Miska, S.3    Kruger, D.H.4    Meisel, H.5    Will, H.6
  • 14
    • 0033824723 scopus 로고    scopus 로고
    • An aberrant genotype revealed in recombinant hepatitis B virus strains from Vietnam
    • Hannoun, C., Norder, H. & Lindh, M. (2000). An aberrant genotype revealed in recombinant hepatitis B virus strains from Vietnam. J Gen Virol 81, 2267-2272.
    • (2000) J Gen Virol , vol.81 , pp. 2267-2272
    • Hannoun, C.1    Norder, H.2    Lindh, M.3
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparitive studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparitive studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 23044484343 scopus 로고    scopus 로고
    • Full genome analysis of hepatitis B virus genotype e strains from South-western Africa and Madagascar reveals low genetic variability
    • Kramvis, A., Restorp, K., Norder, H., Botha, J. F., Magnius, L. O. & Kew, M. C. (2005). Full genome analysis of hepatitis B virus genotype E strains from South-western Africa and Madagascar reveals low genetic variability. J Med Virol 77, 47-52.
    • (2005) J Med Virol , vol.77 , pp. 47-52
    • Kramvis, A.1    Restorp, K.2    Norder, H.3    Botha, J.F.4    Magnius, L.O.5    Kew, M.C.6
  • 17
    • 49149128549 scopus 로고    scopus 로고
    • When should 'I' consider a new hepatitis B virus genotype?
    • Kurbanov, F., Tanaka, Y., Kramvis, A., Simmonds, P. & Mizokami, M. (2008). When should 'I' consider a new hepatitis B virus genotype? J Virol 82, 8241-8242.
    • (2008) J Virol , vol.82 , pp. 8241-8242
    • Kurbanov, F.1    Tanaka, Y.2    Kramvis, A.3    Simmonds, P.4    Mizokami, M.5
  • 19
    • 17044412562 scopus 로고    scopus 로고
    • Re-analysis of a human hepatitis B virus (HBV) isolate from an East African wild born Pan troglodytes schweinfurthii: Evidence for interspecies recombination between HBV infecting chimpanzee and human
    • Magiorkinis, E. N., Magiorkinis, G. N., Paraskevis, D. N. & Hatzakis, A. E. (2005). Re-analysis of a human hepatitis B virus (HBV) isolate from an East African wild born Pan troglodytes schweinfurthii: evidence for interspecies recombination between HBV infecting chimpanzee and human. Gene 349, 165-171.
    • (2005) Gene , vol.349 , pp. 165-171
    • Magiorkinis, E.N.1    Magiorkinis, G.N.2    Paraskevis, D.N.3    Hatzakis, A.E.4
  • 20
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • Martin, D. P., Williamson, C. & Posada, D. (2005). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 21
    • 33744811659 scopus 로고    scopus 로고
    • Genotyping hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR
    • Myers, R., Clark, C., Khan, A., Kellam, P. & Tedder, R. (2006). Genotyping hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR. J Gen Virol 87, 1459-1464.
    • (2006) J Gen Virol , vol.87 , pp. 1459-1464
    • Myers, R.1    Clark, C.2    Khan, A.3    Kellam, P.4    Tedder, R.5
  • 22
    • 0027251125 scopus 로고
    • Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4
    • Naumann, H., Schaefer, S., Yoshida, C. F., Gaspar, A. M., Repp, R. & Gerlich, W. H. (1993). Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4. J Gen Virol 74, 1627-1632.
    • (1993) J Gen Virol , vol.74 , pp. 1627-1632
    • Naumann, H.1    Schaefer, S.2    Yoshida, C.F.3    Gaspar, A.M.4    Repp, R.5    Gerlich, W.H.6
  • 23
    • 0028301224 scopus 로고
    • Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes
    • Norder, H., Courouce, A. M. & Magnius, L. O. (1994). Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198, 489-503.
    • (1994) Virology , vol.198 , pp. 489-503
    • Norder, H.1    Courouce, A.M.2    Magnius, L.O.3
  • 25
    • 0028973455 scopus 로고
    • Relationships between serotypes and genotypes of hepatitis B virus: Genetic classification of HBV by use of surface genes
    • Ohba, K., Mizokami, M., Ohno, T., Suzuki, K., Orito, E., Lau, J. Y., Ina, Y., Ikeo, K. & Gojobori, T. (1995). Relationships between serotypes and genotypes of hepatitis B virus: genetic classification of HBV by use of surface genes. Virus Res 39, 25-34.
    • (1995) Virus Res , vol.39 , pp. 25-34
    • Ohba, K.1    Mizokami, M.2    Ohno, T.3    Suzuki, K.4    Orito, E.5    Lau, J.Y.6    Ina, Y.7    Ikeo, K.8    Gojobori, T.9
  • 26
    • 0023678258 scopus 로고
    • Typing hepatitis B virus by homology in nucleotide sequence: Comparison of surface antigen subtypes
    • Okamoto, H., Tsuda, F., Sakugawa, H., Sastrosoewignjo, R. I., Imai, M., Miyakawa, Y. & Mayumi, M. (1988). Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J Gen Virol 69, 2575-2583.
    • (1988) J Gen Virol , vol.69 , pp. 2575-2583
    • Okamoto, H.1    Tsuda, F.2    Sakugawa, H.3    Sastrosoewignjo, R.I.4    Imai, M.5    Miyakawa, Y.6    Mayumi, M.7
  • 28
    • 77953532456 scopus 로고    scopus 로고
    • Molecular characterization of hepatitis B virus and a 9-year clinical profile in a patient infected with genotype I
    • Osiowy, C., Kaita, K., Solar, K. & Mendoza, K. (2010). Molecular characterization of hepatitis B virus and a 9-year clinical profile in a patient infected with genotype I. J Med Virol 82, 942-948.
    • (2010) J Med Virol , vol.82 , pp. 942-948
    • Osiowy, C.1    Kaita, K.2    Solar, K.3    Mendoza, K.4
  • 29
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam, M., Sawyer, S. & Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 30
    • 16344380414 scopus 로고    scopus 로고
    • SlidingBayes: Exploring recombination using a sliding window approach based on Bayesian phylogenetic inference
    • Paraskevis, D., Deforche, K., Lemey, P., Magiorkinis, G., Hatzakis, A. & Vandamme, A. M. (2005). SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference. Bioinformatics 21, 1274-1275.
    • (2005) Bioinformatics , vol.21 , pp. 1274-1275
    • Paraskevis, D.1    Deforche, K.2    Lemey, P.3    Magiorkinis, G.4    Hatzakis, A.5    Vandamme, A.M.6
  • 31
    • 77956599423 scopus 로고    scopus 로고
    • Genotype X/C recombinant (putative genotype I) of hepatitis B virus is rare in Hanoi, Vietnam - Genotypes B4 and C1 predominate
    • Phung, T. B., Alestig, E., Nguyen, T. L., Hannoun, C. & Lindh, M. (2010). Genotype X/C recombinant (putative genotype I) of hepatitis B virus is rare in Hanoi, Vietnam - genotypes B4 and C1 predominate. J Med Virol 82, 1327-1333.
    • (2010) J Med Virol , vol.82 , pp. 1327-1333
    • Phung, T.B.1    Alestig, E.2    Nguyen, T.L.3    Hannoun, C.4    Lindh, M.5
  • 32
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada, D. & Crandall, K. A. (2001). Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98, 13757-13762.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 44649125063 scopus 로고    scopus 로고
    • Supragenotypic groups of the hepatitis B virus genome
    • Purdy, M. A., Gonzales, A. C., Dimitrova, Z. & Khudyakov, Y. (2008). Supragenotypic groups of the hepatitis B virus genome. J Gen Virol 89, 1179-1183.
    • (2008) J Gen Virol , vol.89 , pp. 1179-1183
    • Purdy, M.A.1    Gonzales, A.C.2    Dimitrova, Z.3    Khudyakov, Y.4
  • 34
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • Salminen, M. O., Carr, J. K., Burke, D. S. & McCutchan, F. E. (1995). Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 11, 1423-1425.
    • (1995) AIDS Res Hum Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 35
    • 33846531835 scopus 로고    scopus 로고
    • Hepatitis B virus taxonomy and hepatitis B virus genotypes
    • Schaefer, S. (2007). Hepatitis B virus taxonomy and hepatitis B virus genotypes. World J Gastroenterol 13, 14-21.
    • (2007) World J Gastroenterol , vol.13 , pp. 14-21
    • Schaefer, S.1
  • 36
    • 29744442930 scopus 로고    scopus 로고
    • Recombination in the genesis and evolution of hepatitis B virus genotypes
    • Simmonds, P. & Midgley, S. (2005). Recombination in the genesis and evolution of hepatitis B virus genotypes. J Virol 79, 15467-15476.
    • (2005) J Virol , vol.79 , pp. 15467-15476
    • Simmonds, P.1    Midgley, S.2
  • 37
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith, J. M. (1992). Analyzing the mosaic structure of genes. J Mol Evol 34, 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 39
    • 0036100298 scopus 로고    scopus 로고
    • Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene
    • & other authors
    • Sugauchi, F., Orito, E., Ichida, T., Kato, H., Sakugawa, H., Kakumu, S., Ishida, T., Chutaputti, A., Lai, C. L. & other authors (2002). Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J Virol 76, 5985-5992.
    • (2002) J Virol , vol.76 , pp. 5985-5992
    • Sugauchi, F.1    Orito, E.2    Ichida, T.3    Kato, H.4    Sakugawa, H.5    Kakumu, S.6    Ishida, T.7    Chutaputti, A.8    Lai, C.L.9
  • 41
  • 42
    • 0025826748 scopus 로고
    • Emergence of and takeover by hepatitis B virus (HBV) with rearrangements in the pre-S/S and pre-C/C genes during chronic HBV infection
    • Tran, A., Kremsdorf, D., Capel, F., Housset, C., Dauguet, C., Petit, M. A. & Brechot, C. (1991). Emergence of and takeover by hepatitis B virus (HBV) with rearrangements in the pre-S/S and pre-C/C genes during chronic HBV infection. J Virol 65, 3566-3574.
    • (1991) J Virol , vol.65 , pp. 3566-3574
    • Tran, A.1    Kremsdorf, D.2    Capel, F.3    Housset, C.4    Dauguet, C.5    Petit, M.A.6    Brechot, C.7
  • 43
    • 43949090856 scopus 로고    scopus 로고
    • New complex recombinant genotype of hepatitis B virus identified in Vietnam
    • Tran, T. T., Trinh, T. N. & Abe, K. (2008). New complex recombinant genotype of hepatitis B virus identified in Vietnam. J Virol 82, 5657-5663.
    • (2008) J Virol , vol.82 , pp. 5657-5663
    • Tran, T.T.1    Trinh, T.N.2    Abe, K.3
  • 44
    • 34248595519 scopus 로고    scopus 로고
    • Clinical and virological characteristics of hepatitis B virus subgenotypes Ba, C1, and C2 in China
    • Wang, Z., Tanaka, Y., Huang, Y., Kurbanov, F., Chen, J., Zeng, G., Zhou, B., Mizokami, M. & Hou, J. (2007). Clinical and virological characteristics of hepatitis B virus subgenotypes Ba, C1, and C2 in China. J Clin Microbiol 45, 1491-1496.
    • (2007) J Clin Microbiol , vol.45 , pp. 1491-1496
    • Wang, Z.1    Tanaka, Y.2    Huang, Y.3    Kurbanov, F.4    Chen, J.5    Zeng, G.6    Zhou, B.7    Mizokami, M.8    Hou, J.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.