Expression analysis of cinnamoyl-CoA reductase (CCR) gene in developing seedlings of Leucaena leucocephala: A pulp yielding tree species

Plant Physiology and Biochemistry

Volumn 49, Issue 2, 2011, Pages 138-145

  Srivastava, Sameer ^a   Gupta, Ranadheer K ^b   Arha, Manish ^a   Vishwakarma, Rishi K ^a   Rawal, Shuban K ^c   Kavi Kishor, P B ^b   Khan, Bashir M ^a  

^a NATIONAL CHEMICAL LABORATORY   (India)

^b OSMANIA UNIVERSITY   (India)

^c Molecular Biology Division   (India)

Author keywords

Cinnamoyl CoA reductase; Developing seedling; Leucaena leucocephala; Lignin biosynthesis

Indexed keywords

ALDEHYDE DEHYDROGENASE; CINNAMOYL COA REDUCTASE; LIGNIN;

ARTICLE; BIOLOGY; CLASSIFICATION; ENZYME LINKED IMMUNOSORBENT ASSAY; ENZYMOLOGY; GENE DOSAGE; GENETICS; LEGUME; METABOLISM; PHYLOGENY; POLYMERASE CHAIN REACTION; SEEDLING; WESTERN BLOTTING;

ALDEHYDE OXIDOREDUCTASES; BLOTTING, WESTERN; COMPUTATIONAL BIOLOGY; ENZYME-LINKED IMMUNOSORBENT ASSAY; FABACEAE; GENE DOSAGE; LIGNIN; PHYLOGENY; POLYMERASE CHAIN REACTION; SEEDLING;

DICOTYLEDONEAE; ESCHERICHIA COLI; LEUCAENA; LEUCAENA LEUCOCEPHALA;

EID: 78751704154     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2010.11.001     Document Type: Article

References (34)

1. Boerjan W., Ralph J., Baucher M. Lignin biosynthesis. Annu. Rev. Plant Biol. 2003, 54:519-546.
2. Hahlbrock K., Scheel D. Physiology and molecular biology of phenylpropanoid metabolism. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1989, 40:347-369.
3. Baucher M., Halpin C., Petit-Conil M., Boerjan W. Lignin: genetic engineering and impact on pulping. Crit. Rev. Biochem. Mol. Biol. 2003, 38:305-350.
4. Goujon T., Sibout R., Eudes A., MacKay J., Jouanin L. Genes involved in the biosynthesis of lignin precursors in Arabidopsis thaliana. Plant Physiol. Biochem. 2003, 41:677-687.
5. Lewis N.G., Yamamoto E. Lignin: occurrence, biogenesis and biodegradation. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1990, 41:455-496.
6. Whetten R.W., MacKay J.J., Sederoff R.R. Recent advances in understanding lignin biosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1998, 49:585-609.
7. Wadenback J., Sara-von A., Egertsdotter U., Walter M.H., Grima-Pettenati J., Goffner D., Gellerstedt G., Gullion T., Clapham D. Lignin biosynthesis in transgenic Norway spruce plants harboring an antisense construct for cinnamoyl-CoA reductase (CCR). Transgenic Res. 2008, 17:379-392.
8. Leplé J.-C., Dauwe R., Morreel K., Storme V., Lapierre C., Pollet B., Naumann A., Kang K.-Y., Kim H., Ruel K., Andrée Lefé B., Joseleau J.-P., Grima-Pettenati J., De Rycke R., Andersson-Gunneras S., Erban A., Fehrle I., Petit-Conil M., Kopka J., Polle A., Messens E., Bjorn S.J., Mansfield S.D., Ralph J., Pilate G., Boerjan W. Downregulation of cinnamoyl-Coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell. 2007, 19:3669-3691.
9. Shaik N.M., Arha M., Nookaraju A., Gupta S.K., Srivastava S., Yadav A.K., Kulkarni P.S., Abhilash O.U., Vishwakarma R.K., Singh S., Tatkare R., Chinnathambi K., Rawal S.K., Khan B.M. Physiol. Mol. Biol. Plants 2009, 15(4):311-318.
10. Larsen K. Cloning and characterization of a ryegrass (Lolium perenne) gene encoding cinnamoyl-CoA reductase (CCR). Plant Sci. 2004, 166:569-581.
11. McInnes R., Lidgett A., Lynch D., Huxley H., Jones E., Mahoney N., Spanganberg G. Isolation and characterization of cinnamoyl-CoA reductase gene from perennial ryegrass (Lolium perenne L.). J. Plant Physiol. 2002, 159:415-422.
12. Hengen P.N. Purification of His-Tag fusion proteins from E. coli. Trends Biochem. Sci. 1995, 20(7):285-286.
13. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: a Laboratory Manual 1989, Cold Spring Harbor, New York. second ed.
14. Freeman W.M., Walker S.J., Vrana K.E. Quantitative RT-PCR: pitfalls and potential. Biotechniques 1999, 26(1):112-125.
15. Pfaffl M.W. A new mathematical model for relative quantification real-time RT-PCR. Nucleic Acid Res. 2001, 29(9):2002-2007.
16. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
17. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
19. Zuckerkandl E., Pauling L. Evolutionary divergence and convergence in proteins. Evolving Genes and Proteins 1965, Academic Press, New York. V. Bryson, H.J. Vogel (Eds.).
20. Lodhi M.A., Ye G.-N., Weeden N.F., Reisch B.I. A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Rep. 1994, 12:6-13.
21. Lacombe E., Hawkins S., Doorsselaers J.V., Piquemal J., Goffner D., Poeydomege O., Boudet A.M., Grima-Pettenati J. Cinnamoyl-CoA reductase, the first committed enzyme of lignin branch biosynthetic pathway: cloning, expression, and phylogenetic relationships. Plant J. 1997, 11:429-441.
22. Luo Z., Xu X., Yan B. Accumulation of lignin and involvement of enzymes in bamboo shoot during storage. Eur. Food Res. Technol. 2008, 226:635-640.
23. Yeh T.-F., Yamada T., Capanema E., Chang H.-M., Chiang V., Kadla J.F. Rapid screening of wood chemical component variations using transmittance near-infrared spectroscopy. J. Agricult. Food Chem. 2005, 53:3328-3332.
24. Piquemal J., Lapierre C., Myton K., O' Connell A., Schuch W., G-Pettenatti J., Boudet A.M. Characterization of a cinnamoyl-CoA reductase that is associated with stem development in E. gunni. Plant J. 1998, 13:71-83.
25. Pichon M., Courbon I., Bechert M., Boudet A.M., Grima-Pettenati J. Cloning and characterization of two maize cDNAs encoding cinnamoyl-CoA reductase (CCR) and differential expression of the corresponding genes. Plant Mol. Biol. 1998, 38:671-676.
26. Lauvergeat V., Lacomme C., Lacombe E., Lasserre E., Roby D., Grima-Pettenati J. Two cinnamoyl-CoA reductase (CCR) genes from Arabidopsis thaliana are differentially expressed during development and in response to infection with pathogenic bacteria. Phytochemistry 2001, 57:1187-1195.
27. Ma Q.-H., Tian B. Biochemical characterization of a cinnamoyl-CoA reductase from wheat. Biol. Chem. 2005, 386(6):553-560.
28. Burge C.B., Karlin S. Finding the genes in genomic DNA. Curr. Opin. Struct. Biol. 1998, 8:346-354.
29. Ma Q.-H. Characterization of a cinnamoyl-CoA reductase that is associated with stem development in wheat. J. Exp. Bot. 2007, 58:2011-2021.
30. Abbott J.C., Barakate A., Pincon G., Legrand M., Lapierre C., Mila I., Schuch W., Halpin C. Simultaneous suppression of multiple genes by single transgenes. Downregulation of three unrelated lignin biosynthetic genes in tobacco. Plant Physiol. 2002, 128:844-853.
31. Chabannes M., Barakate A., Lapierre C., Marita J.M., Ralph J., Pean M., Danoun S., Halpin C., Grima-Pettenati J., Boudet A.M. Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous downregulation of cinnamoyl-CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants. Plant J. 2001, 28:257-270.
32. Elkind Y., Edwards R., Mavandad M., Hedrick S.A., Ribak O., Dixon R.A., Lamb C.J. Abnormal plant development and down-regulation of phenylpropanoid biosynthesis in transgenic tobacco containing a heterologous phenylalanine ammonia-lyase gene. Proc. Natl. Acad. Sci. U.S.A. 1990, 87(22):9057-9061.
33. Pincon G., Chabannes M., Lapierre C., Pollet B., Ruel K., Joseleau J.-P., Boudet A.M., Legrand M. Simultaneous down-regulation of caffeic/5-hydroxy ferulic acid-O-methyltransferase I and cinnamoyl-coenzyme A reductase in the progeny from a cross between tobacco lines homozygous for each transgene. Consequences for plant development and lignin synthesis. Plant Physiol. 2001, 126:145-155.
34. Goujon T., Ferret V., Mila I., Pollet B., Ruel K., Burlat V., Joseleau J.-P., Barrière Y., Lapierre C., Jouanin L. Down-regulation of the AtCCR1 gene in A. thaliana: effects on phenotype, lignins and cell wall degradability. Planta 2003, 217:218-228.