Modeling and simulation of the initial phases of chlorophyll fluorescence from Photosystem II

BioSystems

Volumn 103, Issue 2, 2011, Pages 152-157

  Guo, Ya ^a   Tan, Jinglu ^a  

^a UNIVERSITY OF MISSOURI   (United States)

Author keywords

Chlorophyll fluorescence; Electron transport chain; Modeling; Photosynthesis

Indexed keywords

CHLOROPHYLL;

CHLOROPHYLL; ELECTRON; FLUORESCENCE; LIGHT INTENSITY; PHOTOCHEMISTRY; REACTION KINETICS;

ARTICLE; CHLOROPHYLL FLUORESCENCE; PHOTOSYSTEM II; PHOTOTRANSDUCTION; PROCESS MODEL; REGRESSION ANALYSIS;

EID: 78751701621     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2010.10.008     Document Type: Article

References (36)

1. Baake E., Schloder J.P. Modeling the fast rise of photosynthesis. Bull. Math. Biol. 1992, 54:999-20121.
2. Blankenship R.E. Molecular Mechanisms of Photosynthesis 2002, Blackwell Science Ltd., Malden, MA, pp. 85-123.
3. Butler W.L. Energy distribution in the photochemical apparatus of photosynthesis. Annu. Rev. Plant Physiol. 1978, 29:345-378.
4. Chernev P., Goltsev V., Zaharieva I., Strasser R.J. A highly restricted model approach quantifying structural and functional parameters of Photosystem II probed by the chlorophyll a fluorescence rise. Ecol. Eng. Environ. Protect. 2006, 5(2):19-29.
5. Constantinides A., Mostoufi N. Numerical Methods for Chemical Engineers with MATLAB Applications 1999, Prentice Hall PTR, Upper Saddle River.
6. DeEll J.R., Toivonen P.M.A. Practical Applications of Chlorophyll Fluorescence in Plant Biology 2003, Kluwear Academic Publishers, Boston.
7. Goltsev V., Zaharieva I., Lambrev P., Yordanov I., Strasser R. Simultaneous analysis of prompt and delayed chlorophyll a fluorescence in leaves during the induction period of dark to light adaptation. J. Theor. Biol. 2003, 225:171-183.
8. Goltsev V., Yordanov I. Mathematical model of prompt and delayed chlorophyll fluorescence induction kinetics. Photosynthetica 1997, 33(3-4):571-586.
9. Guo Y., Tan J. A kinetic model structure for delayed fluorescence from plants. Biosystems 2009, 95(2):98-103.
10. Kautsky H., Hirsch A. Neue versuche zur kohlensäureassimilation. Naturwissenschaften 1931, 19:964-1964.
11. Krause G.H., Weis E. Chlorophyll fluorescence and photosynthesis: the basics. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1991, 42:313-349.
12. Horton P., Ruban A.V., Walters R.G. Regulation of light harvesting in green plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996, 47:648-655.
13. Lavergene J., Trissl H.W. Theory of fluorescence induction in Photosystem II: derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photosynthetic units. Biophys. J. 1995, 68:2474-2492.
14. Lazár D. Modelling of light-induced chlorophyll a fluorescence rise (O-J-I-P transient) and changes in 820nm-transmittance signal of photosynthesis. Photosynthetica 2009, 47(4):483-498.
15. Lazár D., Jablonský J. On the approaches applied in formulation of a kinetic model of Photosystem II: different approaches lead to different simulations of the chlorophyll a fluorescence transients. J. Theor. Biol. 2009, 257:260-269.
16. Levenberg K. A method for the solution of certain problems in least squares. Quart. Appl. Math 1944, 2:164-168.
17. Liang Y., Chen H., Tang M., Yang P., Shen S. Responses of Jatropha curcas seedlings to cold stress: photosynthesis-related proteins and chlorophyll fluorescence characteristics. Physiol. Plantarum 2007, 131:508-517.
18. Lubitz W., Reijerse E.J., Messinger J. Solar water-splitting into H2 and O2: design principles of Photosystem II and hydrogenases. Energy Environ. Sci. 2008, 1(1):15-31.
19. Marquardt D.W. An algorithm for least-squares estimation of nonlinear parameters. SIAM J. Appl. Math. 1963, 11:431-441.
20. Mehta P., Jajoo A., Mathur S., Bharti S. Chlorophyll a fluorescence study revealing effects of high salt stress on Photosystem II in wheat leaves. Plant Physiol. Biochem. 2010, 48:16-20.
21. Niyogi K.K. Photoprotection revisited: genetic and molecular approaches. Annu. Plant Physiol. Plant Mol. Biol. 1999, 50:333-359.
22. Papageorgiou G.C., Govindjee Chlorophyll a Fluorescence: A Signature of Photosynthesis 2009, Springer, New York.
23. Razavi F., Pollet B., Steppe K., Van Labeke M.C. Chlorophyll fluorescence as a tool for evaluation of drought stress. Photosynthetica 2008, 46(4):631-633.
24. Rodriguez M., Greenbaum E. Detection limits for real-time source water monitoring using indigenous freshwater microalgae. Water Environ. Res. 2009, 81(11):2363-2371.
25. Rohacek K. Chlorophyll fluorescence parameters: the definitions, photosynthetic meaning, and mutual relationships. Photosynthetica 2002, 40(1):13-29.
26. Rohacek K., Bartak M. Techniques of modulated chlorophyll fluorescence basic concepts, useful parameters, and some applications. Photosynthetica 1999, 37(3):339-363.
27. Strasser R.J., Srivastava A., Govindjee Polyphasic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochem. Photobiol. 1995, 61:32-42.
28. Stribet A., Govindjee, Strasser B.J., Strasser R.J. Chlorophyll a fluorescence induction in higher plants: modeling and numerical simulation. J. Theor. Biol. 1998, 193:131-151.
29. Stribet A.D., Strasser R.J. Numerical simulation of the vivo fluorescence in plants. Math. Comput. Simul. 1996, 42:245-253.
30. Taiz L., Zeiger E. Plant Physiology 2006, Sinauer Associates Inc., Sunderland, pp. 139-148.
31. Vredenberg W.J. Kinetic analysis and mathematical modeling of primary photochemical and photoelectrochemical processes in plant photosystems. BioSystems 2011, 103(2011):138-151.
32. Vredenberg W.J., Prasil O. Modeling of chlorophyll a fluorescence kinetics in plant cells: Derivation of a descriptive algorithm. Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems 2009, 125-149. Springer, Dordrecht, the Netherlands. A. Laisk, L. Nedbal, Govindjee (Eds.).
33. Vredenberg W.J. Algorithm for analysis of OJDIP fluorescence induction curves in terms of photo- and electrochemical events in photosystems of plant cells: Derivation and application. J. Photochem. Photobiol B 2008, 91:58-65.
34. Zhu X., Govindjee, Baker N.R. Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with Photosystem II. Planta 2005, 223:114-133.
35. Živčák M., Brestič M., Olšovská K., Slamka P. Performance index as a sensitive indicator of water stress in Triticum aestivum L. Plant Soil Environ. 2008, 54(4):133-139.
36. Zivcak M., Brestic M., Olsovska K. Application of photosynthetic parameters in the screening of wheat (Triticum aestivum L.) genotypes for improved drought and high temperature tolerance. Photosynthesis. Energy from the Sun: 14th International Congress on Photosynthesis 2008, 1247-1250. J.F. Allen, E. Gantt, J.H. Golbeck, B. Osmond (Eds.).