-
1
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and Why?
-
Sep
-
W. Martin and R. G. Herrmann, "Gene transfer from organelles to the nucleus: how much, what happens, and Why?," Plant Physiol, vol. 118, pp. 9-17, Sep 1998.
-
(1998)
Plant Physiol
, vol.118
, pp. 9-17
-
-
Martin, W.1
Herrmann, R.G.2
-
2
-
-
0034026047
-
Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins
-
Mar
-
J. B. Peltier, G. Friso, D. E. Kalume, P. Roepstorff, F. Nilsson, I. Adamska, and K. J. van Wijk, "Proteomics of the chloroplast: systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins," Plant Cell, vol. 12, pp. 319-41, Mar 2000.
-
(2000)
Plant Cell
, vol.12
, pp. 319-341
-
-
Peltier, J.B.1
Friso, G.2
Kalume, D.E.3
Roepstorff, P.4
Nilsson, F.5
Adamska, I.6
van Wijk, K.J.7
-
3
-
-
0036007922
-
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction
-
Jan
-
J. B. Peltier, O. Emanuelsson, D. E. Kalume, J. Ytterberg, G. Friso, A. Rudella, D. A. Liberles, L. Soderberg, P. Roepstorff, G. von Heijne, and K. J. van Wijk, "Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction," Plant Cell, vol. 14, pp. 211-36, Jan 2002.
-
(2002)
Plant Cell
, vol.14
, pp. 211-236
-
-
Peltier, J.B.1
Emanuelsson, O.2
Kalume, D.E.3
Ytterberg, J.4
Friso, G.5
Rudella, A.6
Liberles, D.A.7
Soderberg, L.8
Roepstorff, P.9
von Heijne, G.10
van Wijk, K.J.11
-
4
-
-
0037143630
-
Integral membrane proteins of the chloroplast envelope: Identification and subcellular localization of new transporters
-
Aug 20
-
M. Ferro, D. Salvi, H. Riviere-Rolland, T. Vermat, D. Seigneurin-Berny, D. Grunwald, J. Garin, J. Joyard, and N. Rolland, "Integral membrane proteins of the chloroplast envelope: identification and subcellular localization of new transporters," Proc Natl Acad Sci U S A, vol. 99, pp. 11487-92, Aug 20 2002.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 11487-11492
-
-
Ferro, M.1
Salvi, D.2
Riviere-Rolland, H.3
Vermat, T.4
Seigneurin-Berny, D.5
Grunwald, D.6
Garin, J.7
Joyard, J.8
Rolland, N.9
-
5
-
-
0348136190
-
Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana
-
May
-
M. Ferro, D. Salvi, S. Brugiere, S. Miras, S. Kowalski, M. Louwagie, J. Garin, J. Joyard, and N. Rolland, "Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana," Mol Cell Proteomics, vol. 2, pp. 325-45, May 2003.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 325-345
-
-
Ferro, M.1
Salvi, D.2
Brugiere, S.3
Miras, S.4
Kowalski, S.5
Louwagie, M.6
Garin, J.7
Joyard, J.8
Rolland, N.9
-
6
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Jul 21
-
O. Emanuelsson, H. Nielsen, S. Brunak, and G. von Heijne, "Predicting subcellular localization of proteins based on their N-terminal amino acid sequence," J Mol Biol, vol. 300, pp. 1005-16, Jul 21 2000.
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
von Heijne, G.4
-
7
-
-
0032935861
-
ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
-
May
-
O. Emanuelsson, H. Nielsen, and G. von Heijne, "ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites," Protein Sci, vol. 8, pp. 978-84, May 1999.
-
(1999)
Protein Sci
, vol.8
, pp. 978-984
-
-
Emanuelsson, O.1
Nielsen, H.2
von Heijne, G.3
-
8
-
-
36348955545
-
A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis
-
Apr
-
F. Abdallah, F. Salamini, and D. Leister, "A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis," Trends Plant Sci, vol. 5, pp. 141-2, Apr 2000.
-
(2000)
Trends Plant Sci
, vol.5
, pp. 141-142
-
-
Abdallah, F.1
Salamini, F.2
Leister, D.3
-
9
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Sep 17
-
W. Martin, T. Rujan, E. Richly, A. Hansen, S. Cornelsen, T. Lins, D. Leister, B. Stoebe, M. Hasegawa, and D. Penny, "Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus," Proc Natl Acad Sci U S A, vol. 99, pp. 12246-51, Sep 17 2002.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelsen, S.5
Lins, T.6
Leister, D.7
Stoebe, B.8
Hasegawa, M.9
Penny, D.10
-
10
-
-
0037213560
-
Chloroplast research in the genomic age
-
Jan
-
D. Leister, "Chloroplast research in the genomic age," Trends Genet, vol. 19, pp. 47-56, Jan 2003.
-
(2003)
Trends Genet
, vol.19
, pp. 47-56
-
-
Leister, D.1
-
11
-
-
70349758082
-
SubChlo: Predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm
-
Nov 21
-
P. Du, S. Cao, and Y. Li, "SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm," J Theor Biol, vol. 261, pp. 330-5, Nov 21 2009.
-
(2009)
J Theor Biol
, vol.261
, pp. 330-335
-
-
Du, P.1
Cao, S.2
Li, Y.3
-
12
-
-
34249687092
-
POPI: Predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties
-
Apr 15
-
C. -W. Tung and S. -Y. Ho, "POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties," Bioinformatics, vol. 23, pp. 942-9, Apr 15 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 942-949
-
-
Tung, C.-W.1
Ho, S.-Y.2
-
13
-
-
48249145694
-
Computational identification of ubiquitylation sites from protein sequences
-
C. -W. Tung and S. -Y. Ho, "Computational identification of ubiquitylation sites from protein sequences," BMC Bioinformatics, vol. 9, p. 310, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 310
-
-
Tung, C.-W.1
Ho, S.-Y.2
-
14
-
-
78751637717
-
Analysis of physicochemical properties on prediction of R5, X4, and R5X4 HIV-1 coreceptor usage
-
K. -T. Hsu, H. -L. Huang, C. -W. Tung, Y. -H. Chen, and S. -Y. Ho, "Analysis of physicochemical properties on prediction of R5, X4, and R5X4 HIV-1 coreceptor usage," Int J Biol Life Sci, vol. 5, pp. 208-15, 2009.
-
(2009)
Int J Biol Life Sci
, vol.5
, pp. 208-215
-
-
Hsu, K.-T.1
Huang, H.-L.2
Tung, C.-W.3
Chen, Y.-H.4
Ho, S.-Y.5
-
15
-
-
34548458988
-
ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features
-
Jan 4
-
W. -L. Huang, C. -W. Tung, H. -L. Huang, S. -F. Hwang, and S. -Y. Ho, "ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features," Biosystems, Jan 4 2007.
-
(2007)
Biosystems
-
-
Huang, W.-L.1
Tung, C.-W.2
Huang, H.-L.3
Hwang, S.-F.4
Ho, S.-Y.5
-
16
-
-
25444506574
-
pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties
-
D. Sarda, G. H. Chua, K. B. Li, and A. Krishnan," pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties," BMC Bioinformatics, vol. 6, p. 152, 2005.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 152
-
-
Sarda, D.1
Chua, G.H.2
Li, K.B.3
Krishnan, A.4
-
17
-
-
0035478854
-
Random forests
-
Oct
-
L. Breiman, "Random forests," Machine Learning, vol. 45, pp. 5-32, Oct 2001.
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
18
-
-
38549155006
-
AAindex: Amino acid index database, progress report 2008
-
Jan
-
S. Kawashima, P. Pokarowski, M. Pokarowska, A. Kolinski, T. Katayama, and M. Kanehisa, "AAindex: amino acid index database, progress report 2008," Nucleic Acids Res, vol. 36, pp. D202-5, Jan 2008.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
Kanehisa, M.6
-
19
-
-
13244265581
-
Information assessment on predicting protein-protein interactions
-
Oct 18
-
N. Lin, B. Wu, R. Jansen, M. Gerstein, and H. Zhao, "Information assessment on predicting protein-protein interactions," BMC Bioinformatics, vol. 5, p. 154, Oct 18 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 154
-
-
Lin, N.1
Wu, B.2
Jansen, R.3
Gerstein, M.4
Zhao, H.5
-
20
-
-
51749102692
-
Enriched random forests
-
Sep 15
-
D. Amaratunga, J. Cabrera, and Y. S. Lee, "Enriched random forests," Bioinformatics, vol. 24, pp. 2010-4, Sep 15 2008.
-
(2008)
Bioinformatics
, vol.24
, pp. 2010-2014
-
-
Amaratunga, D.1
Cabrera, J.2
Lee, Y.S.3
-
21
-
-
58149191270
-
The Universal Protein Resource (UniProt) 2009
-
Jan
-
"The Universal Protein Resource (UniProt) 2009," Nucleic Acids Res, vol. 37, pp. D169-74, Jan 2009.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
-
22
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Jul 1
-
W. Li and A. Godzik, "Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences," Bioinformatics, vol. 22, pp. 1658-9, Jul 1 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
23
-
-
77949601825
-
CD-HIT Suite: A web server for clustering and comparing biological sequences
-
Mar 1
-
Y. Huang, B. Niu, Y. Gao, L. Fu, and W. Li, "CD-HIT Suite: a web server for clustering and comparing biological sequences," Bioinformatics, vol. 26, pp. 680-2, Mar 1 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
25
-
-
10944242117
-
Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acids
-
S. Rackovsky and H. Scheraga, "Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acids," Macromolecules, vol. 15, pp. 1340-1346, 1982.
-
(1982)
Macromolecules
, vol.15
, pp. 1340-1346
-
-
Rackovsky, S.1
Scheraga, H.2
-
26
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Sep 6
-
R. Grantham, "Amino acid difference formula to help explain protein evolution," Science, vol. 185, pp. 862-4, Sep 6 1974.
-
(1974)
Science
, vol.185
, pp. 862-864
-
-
Grantham, R.1
-
27
-
-
0000154810
-
Physicochemical basis of amino acid hydrophobicity scales: Evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptides
-
M. Wilce, M. Aguilar, and M. Hearn, "Physicochemical basis of amino acid hydrophobicity scales: Evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptides," Analytical chemistry, vol. 67, pp. 1210-1219, 1995.
-
(1995)
Analytical chemistry
, vol.67
, pp. 1210-1219
-
-
Wilce, M.1
Aguilar, M.2
Hearn, M.3
-
28
-
-
0029583485
-
Atomic and residue hydrophilicity in the context of folded protein structures
-
L. Kuhn, C. Swanson, M. Pique, J. Tainer, and E. Getzoff, "Atomic and residue hydrophilicity in the context of folded protein structures," Proteins, vol. 23, p. 536, 1995.
-
(1995)
Proteins
, vol.23
, pp. 536
-
-
Kuhn, L.1
Swanson, C.2
Pique, M.3
Tainer, J.4
Getzoff, E.5
-
29
-
-
0019333534
-
Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins
-
Jun 26
-
P. K. Ponnuswamy, M. Prabhakaran, and P. Manavalan, "Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins," Biochim Biophys Acta, vol. 623, pp. 301-16, Jun 26 1980.
-
(1980)
Biochim Biophys Acta
, vol.623
, pp. 301-316
-
-
Ponnuswamy, P.K.1
Prabhakaran, M.2
Manavalan, P.3
-
30
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Jan 16-22
-
D. Eisenberg and A. D. McLachlan, "Solvation energy in protein folding and binding," Nature, vol. 319, pp. 199-203, Jan 16-22 1986.
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
31
-
-
0020484234
-
Structural prediction of membrane-bound proteins
-
Nov 15
-
P. Argos, J. K. Rao, and P. A. Hargrave, "Structural prediction of membrane-bound proteins," Eur J Biochem, vol. 128, pp. 565-75, Nov 15 1982.
-
(1982)
Eur J Biochem
, vol.128
, pp. 565-575
-
-
Argos, P.1
Rao, J.K.2
Hargrave, P.A.3
-
32
-
-
0026521552
-
The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteins
-
H. Nakashima and K. Nishikawa, "The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteins," FEBS letters, vol. 303, pp. 141-146, 1992.
-
(1992)
FEBS letters
, vol.303
, pp. 141-146
-
-
Nakashima, H.1
Nishikawa, K.2
-
33
-
-
0023645034
-
Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins
-
J. Cornette, K. Cease, H. Margalit, J. Spouge, J. Berzofsky, and C. DeLisi, "Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins," J Mol Biol, vol. 195, pp. 659-685, 1987.
-
(1987)
J Mol Biol
, vol.195
, pp. 659-685
-
-
Cornette, J.1
Cease, K.2
Margalit, H.3
Spouge, J.4
Berzofsky, J.5
DeLisi, C.6
-
34
-
-
0035876479
-
Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria1
-
S. Fukuchi and K. Nishikawa, "Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria1," J Mol Biol, vol. 309, pp. 835-843, 2001.
-
(2001)
J Mol Biol
, vol.309
, pp. 835-843
-
-
Fukuchi, S.1
Nishikawa, K.2
-
35
-
-
0034017055
-
Factors enhancing protein thermostability
-
S. Kumar, C. Tsai, and R. Nussinov, "Factors enhancing protein thermostability," Protein Eng Des Sel, vol. 13, p. 179, 2000.
-
(2000)
Protein Eng Des Sel
, vol.13
, pp. 179
-
-
Kumar, S.1
Tsai, C.2
Nussinov, R.3
|