-
1
-
-
70349956497
-
Direct RNA sequencing
-
10.1038/nature08390, 19776739
-
Ozsolak F, Platt AR, Jones DR, Reifenberger JG, Sass LE, McInerney P, Thompson JF, Bowers J, Jarosz M, Milos PM. Direct RNA sequencing. Nature 2009, 461(7265):814-818. 10.1038/nature08390, 19776739.
-
(2009)
Nature
, vol.461
, Issue.7265
, pp. 814-818
-
-
Ozsolak, F.1
Platt, A.R.2
Jones, D.R.3
Reifenberger, J.G.4
Sass, L.E.5
McInerney, P.6
Thompson, J.F.7
Bowers, J.8
Jarosz, M.9
Milos, P.M.10
-
2
-
-
1542328972
-
Properties of the reverse transcription reaction in mRNA quantification
-
10.1373/clinchem.2003.026161, 14726469
-
Stahlberg A, Hakansson J, Xian X, Semb H, Kubista M. Properties of the reverse transcription reaction in mRNA quantification. Clin Chem 2004, 50(3):509-515. 10.1373/clinchem.2003.026161, 14726469.
-
(2004)
Clin Chem
, vol.50
, Issue.3
, pp. 509-515
-
-
Stahlberg, A.1
Hakansson, J.2
Xian, X.3
Semb, H.4
Kubista, M.5
-
3
-
-
67349200276
-
Antisense transcripts of V(D)J rearrangements; artifacts caused by false priming?
-
10.1016/j.molimm.2009.03.020, 19403175
-
Zhao Y, Dunn-Walters DK, Barone F, Spencer J. Antisense transcripts of V(D)J rearrangements; artifacts caused by false priming?. Mol Immunol 2009, 46(11-12):2357-2362. 10.1016/j.molimm.2009.03.020, 19403175.
-
(2009)
Mol Immunol
, vol.46
, Issue.11-12
, pp. 2357-2362
-
-
Zhao, Y.1
Dunn-Walters, D.K.2
Barone, F.3
Spencer, J.4
-
4
-
-
34548400808
-
Sense or antisense? False priming reverse transcription controls are required for determining sequence orientation by reverse transcription-PCR
-
10.1016/j.ab.2007.06.044, 17698025
-
Beiter T, Reich E, Weigert C, Niess AM, Simon P. Sense or antisense? False priming reverse transcription controls are required for determining sequence orientation by reverse transcription-PCR. Anal Biochem 2007, 369(2):258-261. 10.1016/j.ab.2007.06.044, 17698025.
-
(2007)
Anal Biochem
, vol.369
, Issue.2
, pp. 258-261
-
-
Beiter, T.1
Reich, E.2
Weigert, C.3
Niess, A.M.4
Simon, P.5
-
5
-
-
33746683274
-
Reverse transcriptase template switching and false alternative transcripts
-
10.1016/j.ygeno.2005.12.013, 16457984
-
Cocquet J, Chong A, Zhang G, Veitia RA. Reverse transcriptase template switching and false alternative transcripts. Genomics 2006, 88(1):127-131. 10.1016/j.ygeno.2005.12.013, 16457984.
-
(2006)
Genomics
, vol.88
, Issue.1
, pp. 127-131
-
-
Cocquet, J.1
Chong, A.2
Zhang, G.3
Veitia, R.A.4
-
6
-
-
2042482659
-
An RT-PCR artifact in the characterization of bacterial operons
-
Guacucano M, Levican G, Holmes DS, Jedlicki E. An RT-PCR artifact in the characterization of bacterial operons. EJB Electronic Journal of Biotechnology 2000, 3:213-216.
-
(2000)
EJB Electronic Journal of Biotechnology
, vol.3
, pp. 213-216
-
-
Guacucano, M.1
Levican, G.2
Holmes, D.S.3
Jedlicki, E.4
-
7
-
-
34249326541
-
Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR
-
10.1186/1472-6750-7-21, 1876213, 17480233
-
Haddad F, Qin AX, Giger JM, Guo H, Baldwin KM. Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR. BMC Biotechnol 2007, 7:21. 10.1186/1472-6750-7-21, 1876213, 17480233.
-
(2007)
BMC Biotechnol
, vol.7
, pp. 21
-
-
Haddad, F.1
Qin, A.X.2
Giger, J.M.3
Guo, H.4
Baldwin, K.M.5
-
8
-
-
0024531983
-
Fidelity of two retroviral reverse transcriptases during DNA-dependent DNA synthesis in vitro
-
362622, 2469002
-
Roberts JD, Preston BD, Johnston LA, Soni A, Loeb LA, Kunkel TA. Fidelity of two retroviral reverse transcriptases during DNA-dependent DNA synthesis in vitro. Mol Cell Biol 1989, 9(2):469-476. 362622, 2469002.
-
(1989)
Mol Cell Biol
, vol.9
, Issue.2
, pp. 469-476
-
-
Roberts, J.D.1
Preston, B.D.2
Johnston, L.A.3
Soni, A.4
Loeb, L.A.5
Kunkel, T.A.6
-
9
-
-
36148972085
-
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
-
10.1093/nar/gkm683, 2095812, 17897965
-
Perocchi F, Xu Z, Clauder-Munster S, Steinmetz LM. Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res 2007, 35(19):e128. 10.1093/nar/gkm683, 2095812, 17897965.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.19
-
-
Perocchi, F.1
Xu, Z.2
Clauder-Munster, S.3
Steinmetz, L.M.4
-
10
-
-
33645805622
-
An antibody-based microarray assay for small RNA detection
-
10.1093/nar/gkl142, 1435976, 16614443
-
Hu Z, Zhang A, Storz G, Gottesman S, Leppla SH. An antibody-based microarray assay for small RNA detection. Nucleic Acids Res 2006, 34(7):e52. 10.1093/nar/gkl142, 1435976, 16614443.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.7
-
-
Hu, Z.1
Zhang, A.2
Storz, G.3
Gottesman, S.4
Leppla, S.H.5
-
11
-
-
48249146397
-
Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping
-
10.1038/ng.196, 2538488, 18641648
-
Dutrow N, Nix DA, Holt D, Milash B, Dalley B, Westbroek E, Parnell TJ, Cairns BR. Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping. Nat Genet 2008, 40(8):977-986. 10.1038/ng.196, 2538488, 18641648.
-
(2008)
Nat Genet
, vol.40
, Issue.8
, pp. 977-986
-
-
Dutrow, N.1
Nix, D.A.2
Holt, D.3
Milash, B.4
Dalley, B.5
Westbroek, E.6
Parnell, T.J.7
Cairns, B.R.8
-
12
-
-
19544379844
-
Gold nanoparticle probe-based gene expression analysis with unamplified total human RNA
-
10.1093/nar/gnh133, 524311, 15475384
-
Huber M, Wei TF, Muller UR, Lefebvre PA, Marla SS, Bao YP. Gold nanoparticle probe-based gene expression analysis with unamplified total human RNA. Nucleic Acids Res 2004, 32(18):e137. 10.1093/nar/gnh133, 524311, 15475384.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.18
-
-
Huber, M.1
Wei, T.F.2
Muller, U.R.3
Lefebvre, P.A.4
Marla, S.S.5
Bao, Y.P.6
-
13
-
-
18144442663
-
Direct labeling of RNA with multiple biotins allows sensitive expression profiling of acute leukemia class predictor genes
-
10.1093/nar/gnh085, 443553, 15205470
-
Cole K, Truong V, Barone D, McGall G. Direct labeling of RNA with multiple biotins allows sensitive expression profiling of acute leukemia class predictor genes. Nucleic Acids Res 2004, 32(11):e86. 10.1093/nar/gnh085, 443553, 15205470.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.11
-
-
Cole, K.1
Truong, V.2
Barone, D.3
McGall, G.4
-
14
-
-
33845876339
-
Direct and sensitive miRNA profiling from low-input total RNA
-
10.1261/rna.234507, 1705746, 17105992
-
Wang H, Ach RA, Curry B. Direct and sensitive miRNA profiling from low-input total RNA. RNA 2007, 13(1):151-159. 10.1261/rna.234507, 1705746, 17105992.
-
(2007)
RNA
, vol.13
, Issue.1
, pp. 151-159
-
-
Wang, H.1
Ach, R.A.2
Curry, B.3
-
15
-
-
0028817281
-
Nonradioactive 3'-end-labeling of RNA molecules of different lengths by terminal deoxynucleotidyltransferase
-
10.1006/abio.1995.1068, 7535988
-
Rosemeyer V, Laubrock A, Seibl R. Nonradioactive 3'-end-labeling of RNA molecules of different lengths by terminal deoxynucleotidyltransferase. Anal Biochem 1995, 224(1):446-449. 10.1006/abio.1995.1068, 7535988.
-
(1995)
Anal Biochem
, vol.224
, Issue.1
, pp. 446-449
-
-
Rosemeyer, V.1
Laubrock, A.2
Seibl, R.3
-
16
-
-
67650815471
-
Prevalence of transcription promoters within archaeal operons and coding sequences
-
10.1038/msb.2009.42, 2710873, 19536208
-
Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, et al. Prevalence of transcription promoters within archaeal operons and coding sequences. Mol Syst Biol 2009, 5:285. 10.1038/msb.2009.42, 2710873, 19536208.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 285
-
-
Koide, T.1
Reiss, D.J.2
Bare, J.C.3
Pang, W.L.4
Facciotti, M.T.5
Schmid, A.K.6
Pan, M.7
Marzolf, B.8
Van, P.T.9
Lo, F.Y.10
-
17
-
-
0037441669
-
Directly labeled mRNA produces highly precise and unbiased differential gene expression data
-
10.1093/nar/gng013, 150245, 12582258
-
Gupta V, Cherkassky A, Chatis P, Joseph R, Johnson AL, Broadbent J, Erickson T, DiMeo J. Directly labeled mRNA produces highly precise and unbiased differential gene expression data. Nucleic Acids Res 2003, 31(4):e13. 10.1093/nar/gng013, 150245, 12582258.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.4
-
-
Gupta, V.1
Cherkassky, A.2
Chatis, P.3
Joseph, R.4
Johnson, A.L.5
Broadbent, J.6
Erickson, T.7
DiMeo, J.8
-
18
-
-
3142617354
-
Array comparative genomic hybridization with cyanin cis-platinum-labeled DNAs
-
Raap AK, van der Burg MJ, Knijnenburg J, Meershoek E, Rosenberg C, Gray JW, Wiegant J, Hodgson JG, Tanke HJ. Array comparative genomic hybridization with cyanin cis-platinum-labeled DNAs. Biotechniques 2004, 37(1):130-134.
-
(2004)
Biotechniques
, vol.37
, Issue.1
, pp. 130-134
-
-
Raap, A.K.1
van der Burg, M.J.2
Knijnenburg, J.3
Meershoek, E.4
Rosenberg, C.5
Gray, J.W.6
Wiegant, J.7
Hodgson, J.G.8
Tanke, H.J.9
-
19
-
-
57049101718
-
Comparative genomics of wild type yeast strains unveils important genome diversity
-
10.1186/1471-2164-9-524, 2588607, 18983662
-
Carreto L, Eiriz MF, Gomes AC, Pereira PM, Schuller D, Santos MA. Comparative genomics of wild type yeast strains unveils important genome diversity. BMC Genomics 2008, 9:524. 10.1186/1471-2164-9-524, 2588607, 18983662.
-
(2008)
BMC Genomics
, vol.9
, pp. 524
-
-
Carreto, L.1
Eiriz, M.F.2
Gomes, A.C.3
Pereira, P.M.4
Schuller, D.5
Santos, M.A.6
-
20
-
-
38349081518
-
MicroRNA Labeling Methods Directly Influence the Accuracy of Expression Profiling Detection
-
Enos JM, Duzeski JL, Roesch PL, Hagstrom JE, Watt MAV. MicroRNA Labeling Methods Directly Influence the Accuracy of Expression Profiling Detection. Biotechniques 2007, 42:378.
-
(2007)
Biotechniques
, vol.42
, pp. 378
-
-
Enos, J.M.1
Duzeski, J.L.2
Roesch, P.L.3
Hagstrom, J.E.4
Watt, M.A.V.5
-
21
-
-
77949895526
-
Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays
-
10.1186/1471-2105-11-82, 2836303, 20144223
-
Hovik H, Chen T. Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays. BMC Bioinformatics 2010, 11(1):82. 10.1186/1471-2105-11-82, 2836303, 20144223.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 82
-
-
Hovik, H.1
Chen, T.2
-
22
-
-
0027214848
-
Interactions of Porphyromonas gingivalis with epithelial cells
-
280837, 8386706
-
Duncan MJ, Nakao S, Skobe Z, Xie H. Interactions of Porphyromonas gingivalis with epithelial cells. Infect Immun 1993, 61(5):2260-2265. 280837, 8386706.
-
(1993)
Infect Immun
, vol.61
, Issue.5
, pp. 2260-2265
-
-
Duncan, M.J.1
Nakao, S.2
Skobe, Z.3
Xie, H.4
-
23
-
-
33747856481
-
Transcript mapping with high-density oligonucleotide tiling arrays
-
10.1093/bioinformatics/btl289, 16787969
-
Huber W, Toedling J, Steinmetz LM. Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics 2006, 22(16):1963-1970. 10.1093/bioinformatics/btl289, 16787969.
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 1963-1970
-
-
Huber, W.1
Toedling, J.2
Steinmetz, L.M.3
-
24
-
-
32344445935
-
Strand-specific, real-time RT-PCR assays for quantification of genomic and positive-sense RNAs of the fish rhabdovirus, Infectious hematopoietic necrosis virus
-
10.1016/j.jviromet.2005.08.017, 16199097
-
Purcell MK, Hart SA, Kurath G, Winton JR. Strand-specific, real-time RT-PCR assays for quantification of genomic and positive-sense RNAs of the fish rhabdovirus, Infectious hematopoietic necrosis virus. J Virol Methods 2006, 132(1-2):18-24. 10.1016/j.jviromet.2005.08.017, 16199097.
-
(2006)
J Virol Methods
, vol.132
, Issue.1-2
, pp. 18-24
-
-
Purcell, M.K.1
Hart, S.A.2
Kurath, G.3
Winton, J.R.4
-
25
-
-
25444509247
-
Secondary structure in the target as a confounding factor in synthetic oligomer microarray design
-
10.1186/1471-2164-6-31, 555549, 15755320
-
Ratushna VG, Weller JW, Gibas CJ. Secondary structure in the target as a confounding factor in synthetic oligomer microarray design. BMC Genomics 2005, 6(1):31. 10.1186/1471-2164-6-31, 555549, 15755320.
-
(2005)
BMC Genomics
, vol.6
, Issue.1
, pp. 31
-
-
Ratushna, V.G.1
Weller, J.W.2
Gibas, C.J.3
-
26
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
10.1038/86730, 11283592
-
Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol 2001, 19(4):342-347. 10.1038/86730, 11283592.
-
(2001)
Nat Biotechnol
, vol.19
, Issue.4
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
-
27
-
-
71749111302
-
Effects of formamide on the thermal stability of DNA duplexes on biochips
-
10.1016/j.ab.2009.09.044, 19796625
-
Fuchs J, Dell'Atti D, Buhot A, Calemczuk R, Mascini M, Livache T. Effects of formamide on the thermal stability of DNA duplexes on biochips. Anal Biochem 2010, 397(1):132-134. 10.1016/j.ab.2009.09.044, 19796625.
-
(2010)
Anal Biochem
, vol.397
, Issue.1
, pp. 132-134
-
-
Fuchs, J.1
Dell'Atti, D.2
Buhot, A.3
Calemczuk, R.4
Mascini, M.5
Livache, T.6
-
28
-
-
33747880641
-
Troubleshooting microarray hybridizations
-
10.1016/S0076-6879(06)11003-4, 16939784
-
Eads B, Cash A, Bogart K, Costello J, Andrews J. Troubleshooting microarray hybridizations. Methods Enzymol 2006, 411:34-49. 10.1016/S0076-6879(06)11003-4, 16939784.
-
(2006)
Methods Enzymol
, vol.411
, pp. 34-49
-
-
Eads, B.1
Cash, A.2
Bogart, K.3
Costello, J.4
Andrews, J.5
-
29
-
-
1842571774
-
Impact of surface chemistry and blocking strategies on DNA microarrays
-
10.1093/nar/gng086, 169979, 12907739
-
Taylor S, Smith S, Windle B, Guiseppi-Elie A. Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res 2003, 31(16):e87. 10.1093/nar/gng086, 169979, 12907739.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.16
-
-
Taylor, S.1
Smith, S.2
Windle, B.3
Guiseppi-Elie, A.4
-
30
-
-
0000912747
-
Basis of actinomycin action. I. DNA binding and inhibition of RNA-polymerase synthetic reactions by actinomycin
-
10.1073/pnas.48.12.2094, 221129, 13948669
-
Goldberg IH, Rabinowitz M, Reich E. Basis of actinomycin action. I. DNA binding and inhibition of RNA-polymerase synthetic reactions by actinomycin. Proc Natl Acad Sci USA 1962, 48:2094-2101. 10.1073/pnas.48.12.2094, 221129, 13948669.
-
(1962)
Proc Natl Acad Sci USA
, vol.48
, pp. 2094-2101
-
-
Goldberg, I.H.1
Rabinowitz, M.2
Reich, E.3
-
31
-
-
22144467302
-
Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping
-
10.1016/j.tig.2005.06.007, 1855044, 15979196
-
Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. Trends Genet 2005, 21(8):466-475. 10.1016/j.tig.2005.06.007, 1855044, 15979196.
-
(2005)
Trends Genet
, vol.21
, Issue.8
, pp. 466-475
-
-
Royce, T.E.1
Rozowsky, J.S.2
Bertone, P.3
Samanta, M.4
Stolc, V.5
Weissman, S.6
Snyder, M.7
Gerstein, M.8
-
32
-
-
0037440012
-
Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts
-
10.1093/nar/gkg133, 140499, 12527785
-
Luebke KJ, Balog RP, Garner HR. Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts. Nucleic Acids Res 2003, 31(2):750-758. 10.1093/nar/gkg133, 140499, 12527785.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.2
, pp. 750-758
-
-
Luebke, K.J.1
Balog, R.P.2
Garner, H.R.3
-
33
-
-
77953901913
-
A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data
-
10.1093/bioinformatics/btq162, 20395286
-
Yu WH, Hovik H, Chen T. A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data. Bioinformatics 2010, 26(11):1423-1430. 10.1093/bioinformatics/btq162, 20395286.
-
(2010)
Bioinformatics
, vol.26
, Issue.11
, pp. 1423-1430
-
-
Yu, W.H.1
Hovik, H.2
Chen, T.3
|