[3] Troubleshooting Microarray Hybridizations

Methods in Enzymology

Volumn 411, Issue , 2006, Pages 34-49

  Eads, Brian ^a   Cash, Amy ^a   Bogart, Kevin ^a   Costello, James ^a   Andrews, Justen ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFACT; DATA ANALYSIS; DNA HYBRIDIZATION; FLUORESCENCE; GENETIC PROCEDURES; IMAGE ANALYSIS; MICROARRAY ANALYSIS; PRIORITY JOURNAL; QUALITY CONTROL; REVIEW; RNA ANALYSIS; SENSITIVITY AND SPECIFICITY; DNA MICROARRAY; METHODOLOGY;

OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 33747880641     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(06)11003-4     Document Type: Review

References (18)

1. Anderson M.L.M., and Young B.D. Quantitative filter hybridization. In: Hames B.D., and Higgins S.J. (Eds). "Nucleic Acid Hybridization A Practical Approach" (1985), IRL Press, Oxford 73-111
2. Auer H., Lyianarachchi S., Newsom D., Klisovic M., Marcucci G., and Kornacker K. Chipping away at the chip bias: RNA degradation in microarray analysis. Nature Genet. 35 (2003) 292-293
3. Bowtell D., and Sambrook J. "DNA Microarrays: A Molecular Cloning Manual." (2002), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
4. Diehl F., Grahlmann S., Beier M., and Hoheisel J. Manufacturing DNA microarrays of high spot homogeneity and reduced background signal. Nucleic Acids Res. 29 (2001) E38
5. Dumur C., Nasim S., Best A., Archer K., Ladd A., Mas V., Wilkinson D., Garrett C., and Ferreira-Gonzalez A. Evaluation of quality-control criteria for microarray gene expression analysis. Clin. Chem. 50 (2004) 1994-2002
6. Futschick M., and Crompton T. Model selection and efficiency testing for normalization of cDNA microarray data. Genome Biol. 5 8 (2004) R60
7. Goda S., and Minton N. A simple procedure for gel electrophoresis and Northern blotting of RNA. Nucleic Acids Res. 23 16 (1995) 3357-3358
8. Grunstein M., and Hogness D.S. Colony hybridization: A method for the isolation of cloned DNAs that contain a specific gene. Proc. Natl. Acad. Sci. USA 68 (1975) 2559-2563
9. Hardiman G. "Microarrays Methods and Applications: Nuts and Bolts." (2003), DNA Press, Eagleville PA
10. Hegde P., Qi R., Abernathy K., Gay C., Dharap S., Gaspard R., Hughes J., Snesrud E., Lee N., and Quackenbush J. A concise guide to cDNA microarray analysis. Biotechniques 9 (2000) 548-556
11. Holloway A., van Laar R., Tothill R., and Bowtell D. Options available, from start to finish, for obtaining data from DNA microarrays II. Nature Genet. 32 Suppl. (2002) 481-489
12. Kamberova G., and Shah S. "DNA Array Image Analysis: Nuts and Bolts." (2003), DNA Press, Eagleville, PA
13. Sambrook J., and Russell D. "Molecular Cloning: A Laboratory Manual." (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
14. Schena M., Shalon D., Davis R., and Brown P. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
15. Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98 (1975) 503-517
16. Wit E., and McClure J. "Statistics for Microarrays." (2004), Wiley, New York
17. Wrobel G., Schlingemann J., Hummerich L., Kramer H., Lichter P., and Hahn M. Optimization of high-density cDNA-microarray protocols by 'design of experiments'. Nucleic Acids Res. 31 (2003) e67
18. Zhang W., Shumlevich I., and Astola J. "Microarray Quality Control." (2004), Wiley, New York