One year variability of peak heights, heterozygous balance and inter-locus balance for the DNA positive control of AmpFℓSTR© Identifiler© STR kit

Forensic Science International: Genetics

Volumn 5, Issue 1, 2011, Pages 43-49

  Debernardi, A ^c   Suzanne, E ^c   Formant, A ^c   Pene L ^c   Dufour, A B ^a,b   Lobry, J R ^a  

^a UNIVERSITÉ LYON 1   (France)

^b LABORATOIRE DE BIOMÉTRIE ET BIOLOGIE EVOLUTIVE   (France)

^c Centre Universitaire des Saints Pères   (France)

Author keywords

Control DNA 9947A; DNA typing; Forensic science; Heterozygous balance; Human identification; Inter locus balance; Multivariate analysis; Peak height; Positive control experiment; R software; Short tandem repeat

Indexed keywords

ALLELE PEAK HEIGHT; ARTICLE; AUTOANALYZER; CONTROLLED STUDY; DNA CONTENT; FEMALE; GENE AMPLIFICATION; GENE LOCUS; GENETIC ANALYSIS; GENETIC PARAMETERS; HETEROZYGOSITY; HETEROZYGOUS BALANCE; HUMAN; HUMAN CELL; INTERLOCUS BALANCE; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; QUALITY CONTROL; SHORT TANDEM REPEAT;

EID: 78651347107     PISSN: 18724973     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fsigen.2010.01.020     Document Type: Article

References (27)

1. E. Boring The nature and history of experimental control American Journal of Psychology 67 1954 573 589
2. © PCR Amplification Kit. User's Manual 2006 Applied Biosystems Foster City, CA, USA (pN 4323291D)
3. C. Fregeau, R. Aubin, J. Elliott, S. Gill, and R. Fourney Characterization of human lymphoid cell lines GM9947 and GM9948 as intra- and interlaboratory reference standards for DNA typing Genomics 28 1995 184 197
4. R. Szibora, J. Edelmann, S. Hering, I. Plate, H. Wittig, L. Roewer, P. Wiegand, F. Calĺ, V. Romano, and M. Michael Cell line DNA typing in forensic genetics - the necessity of reliable standards Forensic Science International 138 2003 37 43
5. R Development Core Team R: A Language and Environment for Statistical Computing 2009 R Foundation for Statistical Computing Vienna, Austria
6. The Foundation for Statistical Computing, R: regulatory compliance and validation issues a guidance document for the use of R in regulated clinical trial environments, Tech. Rep., Department of Statistics and Mathematics, Wirtschaftsuniversitt Wien, Augasse 2-6, 1090 Vienna, Austria, 2008.
7. Anonymous, Applied biosystems genetic analysis data file format, Tech. Rep., Applied Biosystems, 2006.
8. D. Charif, and J.R. Lobry SeqinR 1. 0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis H.R.U. Bastolla, M. Porto, M. Vendruscolo, Structural Approaches to Sequence Evolution: Molecules, Networks, Populations, Biological and Medical Physics, Biomedical Engineering 2007 Springer Verlag New York, USA 207 232
9. D. Charif, J. Thioulouse, J.R. Lobry, and G. Perriére Online synonymous codon usage analyses with the ade4 and seqinR packages Bioinformatics 21 4 2005 545 547
10. F. Fritsch, and R. Carlson Monotone piecewise cubic interpolation SIAM Journal on Numerical Analysis 17 1980 238 246
11. P. Gill, R. Sparkes, and C. Kimpton Development of guidelines to designate alleles using an STR multiplex system Journal of Forensic Sciences 89 1997 185 197
12. P. Gill, R. Sparkes, L. Fereday, and D. Werrett Report of the European network of forensic science institutes (ENSFI): formulation and testing of principles to evaluate STR multiplex Journal of Forensic Sciences 108 2000 1 29
13. K. Pearson On lines and planes of closest fit to systems of points in space Philosophical Transactions of the Royal Society London Series A - Physics 6 2 1901 559 572
14. D. Chessel, A.-B. Dufour, and J. Thioulouse The ade4 package-I- One-table methods R News 4 2004 5 10
15. S. Dray, A. Dufour, and D. Chessel The ade4 package. ii: Two-table and k-table methods R News 7 2007 47 52
16. S. Dray, and A. Dufour The ade4 package: implementing the duality diagram for ecologists Journal of Statistical Software 22 4 2007 1 20
17. W. Kruskal, and W. Wallis Use of ranks in one-criterion variance analysis Journal of the American Statistical Association 47 1952 584 621
18. W. Kruskal, and W. Wallis Use of ranks in one-criterion variance analysis. errata Journal of the American Statistical Association 48 1953 907 911
19. P. Gill, R. Puch-Solis, and J. Curran The low-template-DNA (stochastic) threshold - its determination relative to risk analysis for national DNA databases Forensic Science International: Genetics 3 2009 104 111
20. P. Gill, J. Curran, and K. Elliot A graphical simulation model of the entire DNA process associated with the analysis of short tandem repeat loci Nucleic Acids Research 33 2005 632 643
21. B. Arezi, W. Xing, J. Sorge, and H. Hogrefe Amplification efficiency of thermostable DNA polymerases Analytical Biochemistry 321 2003 226 235
22. W. Chantratita, C. Sukasem, S. Kaewpongsri, C. Srichunrusami, W. Pairoj, A. Thitithanyanont, K. Chaichoune, P. Ratanakron, T. Songserm, S. Damrongwatanapokin, and O. Landt Qualitative detection of avian influenza A (H5N1) viruses: a comparative evaluation of four real-time nucleic acid amplification methods Molecular and Cellular Probes 22 2008 287 293
23. J. Whitaker, E. Cotton, and P. Gill A comparison of the characteristics of profiles produced with the AMPFlSTR SGM plus multiplex system for both standard and low copy number (LCN) STR DNA analysis Forensic Science International 123 2001 215 223
24. J. Butler Forensic DNA typing: biology, technology and genetics of STR markers 2005 Elsevier New York, USA
25. J. Butler Genetics and genomics of core short tandem repeat loci used in human identity testing Journal of Forensic Sciences 51 2006 253 265
26. W. Bar, B. Brinkmann, P. Lincoln, W. Mayr, and U. Rossi DNA recommendations. 1994 report concerning further recommendations of the DNA commission of the ISFH regarding PCR-based polymorphisms in STR (short tandem repeat) systems Int. J. Leg. Med. 107 1994 159 160
27. J. Doležel, J. Bartoš, H. Voglmayr, and J. Greilhuber Nuclear DNA content and genome size of trout and human Cytometry 51A 2003 127 128