Can N2O stable isotopes and isotopomers be useful tools to characterize sources and microbial pathways of N2O production and consumption in tropical soils?

Global Biogeochemical Cycles

Volumn 25, Issue 1, 2011, Pages

  Park, S ^a,b   Perez T ^c,d,e   Boering, K A ^a   Trumbore, S E ^c   Gil, J ^d   Marquina, S ^d   Tyler, S C ^c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b HARVARD UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d INSTITUTO VENEZOLANO DE INVESTIGACIONES CIENTÍFICAS   (Venezuela)

^e RICE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURAL SOILS; CORN FIELDS; ISOTOPE MEASUREMENTS; ISOTOPIC COMPOSITION; ISOTOPOMERS; MATURE FOREST; MICROBIAL PROCESS; MICROBIOLOGICAL PROCESS; NATIONAL FORESTS; NITROUS OXIDE; RAINY SEASONS; SITE-SPECIFIC; STABLE ISOTOPES; TROPICAL FOREST; TROPICAL RAIN FOREST; TROPICAL SOILS; VENEZUELA; WEIGHTED AVERAGES;

GLOBAL WARMING; GREENHOUSE GASES; ISOTOPES; NITROGEN OXIDES; TROPICS;

SOILS;

AGRICULTURAL LAND; AGRICULTURAL SOIL; FERTILIZER; GREENHOUSE GAS; ISOTOPIC COMPOSITION; MAIZE; MICROBIAL ACTIVITY; NITROGEN ISOTOPE; NITROUS OXIDE; RAINFOREST; SOIL MICROORGANISM; STABLE ISOTOPE; TROPICAL FOREST; TROPICAL SOIL; WET SEASON;

BRAZIL; GUARICO; PARA [BRAZIL]; TAPAJOS NATIONAL FOREST; VENEZUELA;

ZEA MAYS;

EID: 78651329266     PISSN: 08866236     EISSN: None     Source Type: Journal    
DOI: 10.1029/2009GB003615     Document Type: Article

References (65)

1. 2O source partitioning in soils: recent progress, remaining challenges and future considerations, Rapid Commun. Mass Spectrom., 22, 1664-1672, doi:10.1002/rcm.3456. (Pubitemid 351810114)
2. 2O production in Para-coccus denitrificans, Appl. Environ. Microbiol., 65, 989-994.
3. 2O budget changes since pre- industrial time from new firn air and ice core isotope measurements, Atmos. Chem. Phys., 6, 493-503, doi:10.5194/acp-6-493-2006.
4. 2O emitted from a temperate grassland soil after fertiliser application, Rapid Commun. Mass Spectrom., 17, 2550-2556, doi:10.1002/rcm.1223.
5. 2O released from estuarine soils-A laboratory experiment using tidal flooding chambers, Rapid Commun. Mass Spectrom., 18, 1561-1568, doi:10.1002/rcm.1519. (Pubitemid 38937367)
6. Cardenas, L. M., D. Chadwick, D. Scholefield, R. Fychan, C. L. Marley, R. Jones, R. Bola, R. Well, and A. Vallejo (2007), The effect of diet manipulation on nitrous oxide and methane emissions from manure application to incubated grassland soils, Atmos. Environ., 41, 7096-7107, doi:10.1016/j.atmosenv.2007.04. 055. (Pubitemid 47496111)
7. Casciotti, K. L., D. Sigman, M. Galanter Hastings, J. K. Boehlke, and A. Hilkert (2002), Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifyer method, Anal. Chem., 74, 4905-4912, doi:10.1021/ac020113w.
8. 2 and soil carbonate: Theory, practice, and application to some prairie soils of upper Midwestern North America, in Mass Spectrometry of Soils, edited by T. W. Boutton and S. Yamasaki, pp. 113-131, Marcel Dekker, New York.
9. Davidson, E. A. (1991), Fluxes of nitrous oxide and nitric oxide from terrestrial ecosystems, in Microbial Production and Consumption of Greenhouse Gases: Methane, Nitrogen, Oxides and Halomethanes, edited by J. E. Rogers and W. B. Whitman, pp. 219-235, Am. Soc. for Microbiol., Washington D. C.
10. Davidson, E. A., D. C. Nepstad, F. Y. Ishida, and P. M. Brando (2008), Effects of an experimental drought and recovery on soil emissions of carbon dioxide, methane, nitrous oxide, and nitric oxide in a moist tropical forest, Global Change Biol., 14, 2582-2590.
11. Denman, K. L., et al. (2007), Couplings Between Changes in the Climate System and Biogeochemistry, in Climate Change 2001: The Scientific Basis: Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change, edited by J. T. Houghton et al., pp. 499-587, Cambridge Univ. Press, New York.
12. Forster, P., et al. (2007), Changes in atmospheric constituents and in radiative forcing, in Climate Change 2001: The Scientific Basis: Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change, edited by J. T. Houghton et al., pp. 129-234, Cambridge Univ. Press, New York.
13. 2O by FT-IR spectroscopy, Anal. Chem., 81(6), 2227-2234, doi:10.1021/ac802371c.
14. + in marine, estuarine and fresh waters: An adaptation of the ammonia diffusion method, Mar. Chem., 60, 235-243, doi:10.1016/S0304-4203(97)00099-6. (Pubitemid 28253417)
15. Juretschko, S., G. Timmermann, M. Schmid, K. H. Schleifer, A. Pommerening-Roser, H. P. Koops, and M. Wang (1998), Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominate populations, Appl. Environ. Microbiol., 64, 3042-3051.
16. Kaiser, J., S. Park, K. A. Boering, C. A. M. Brenninkmeijer, A. Hilkert, and T. Röckmann (2004), Mass spectrometric method for the absolute calibration of the intramolecular nitrogen isotope distribution in nitrous oxide, Anal. Bioanal. Chem., 378, 256-269, doi:10.1007/s00216-003-2233-2. (Pubitemid 40890233)
17. Keller, M., R. Varner, J. D. Dias, H. Silva, P. Crill, and R. C. De Oliveira (2005), Soil-atmosphere exchange of nitrous oxide, nitric oxide, methane, and carbon dioxide in logged and undisturbed forest in the Tapajos National Forest, Brazil, Earth Interact., 9, 1-28.
18. Kim, K.-R., and H. Craig (1993), Nitrogen-15 and oxygen-18 characteristic of nitrous oxide: A global perspective, Nature, 262, 1855-1857.
19. 2O: A review, Rapid Commun. Mass Spectrom., 21, 3569-3578, doi:10.1002/rcm.3249. (Pubitemid 350124624)
20. Kowalchuk, G. A., J. R. Stephen, W. De Bore, J. I. Prosser, T. M. Embley, and J. W. Woldendorp (1997), Analysis of ammonia-oxidizing bacteria of the b subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR- amplified 16S ribosomal DNA fragments, Appl. Environ. Microbiol., 63, 1489-1497.
21. Lambin, E. F., H. J. Geist, and E. Lepers (2003), Dynamics of land-use and land-cover change in tropical regions, Annu. Rev. Environ. Resour., 28, 205-241, doi:10.1146/annurev.energy.28.050302.105459.
22. 2O produced in landfill cover soils, J. Geophys. Res., 105, 17,709-17,720, doi:10.1029/2000JD900055.
23. Mariotti, A., J. C. Germon, P. Hubert, P. Kaiser, R. Létolle, A. Tardieux, and P. Tardieux (1981), Experimental determination of nitrogen kinetic isotope fractionation: Some principles: Ilustration for the denitrification and nitrification processes, Plant Soil, 62, 413-430, doi:10.1007/BF02374138.
24. 2O step of denitrification in soils, Can. J. Soil Sci., 62, 227-241, doi:10.4141/cjss82-027.
25. Martinelli, L. A., M. C. Piccolo, A. R. Townsend, P. M. Vitousek, E.Cuevas, W. McDowell, G. P. Robertson, O. C. Santos, and K. Treseder (1999), Nitrogen stable isotopic composition of leaves and soil: Tropical versus temperate forests, Biogeochemistry, 46, 45-65, doi:10.1007/BF01007573.
26. Menyailo, O. V., and B. A. Hungate (2006), Stable isotope discrimination during soil denitrification: Production and consumption of nitrous oxide, Global Biogeochem. Cycles, 20, GB3025, doi:10.1029/2005GB002527. (Pubitemid 46761044)
27. Müller, C., R. R. Sherlock, and P. H. Williams (1997), Mechanistic model for nitrous oxide emission via nitrification and denitrification, Biol. Fertil. Soils, 24, 231-238.
28. Nepstad, D. C., I. M. Tohver, D. Ray, P. Moutinho, and G. Cardinot (2007), Mortality of large trees and lianas following experimental drought in an Amazon forest, Ecology, 88, 2259-2269, doi:10.1890/06-1046.1. (Pubitemid 351345135)
29. 2O reduction in soils and in pure cultures of denitrifiers, J. Geophys. Res., 112, G02005, doi:10.1029/2006JG000287. (Pubitemid 47351087)
30. Otte, S., J. Schalk, J. G. Kuenen, and M. S. Jetten (1999), Hydroxylamine oxidation and subsequent nitrous oxide production by the heterotrophic ammonia oxidizer Alcaligenes faecalis, Appl. Microbiol. Biotechnol., 51, 255-261, doi:10.1007/s002530051390. (Pubitemid 29111300)
31. 2O iso-topologues in the stratosphere: Influence of transport on the apparent enrichment factors and the isotopologue fluxes to the troposphere, J. Geophys. Res., 109, D01305, doi:10.1029/2003JD003731.
32. Park, S., K. A. Boering, D. Etheridge, D. Ferretti, K.-R. Kim, R. Langen-felds, T. Van Ommen, P. Steele, and C. Trudinger (2005), Trends in the nitrogen and oxygen isotopic compositions of tropospheric nitrous oxide and implications for the global budget, Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract A44B-0.
33. Park, S., P. Croteau, K. A. Boering, D. Etheridge, D. Ferretti, P. Fraser, K. Kim, P. Krummel, R. Langenfelds, P. Steele, C. Trudinger, T. Van Ommen (2008), Trends, seasonal cycles, and interannual variability in the isotopic composition of nitrous oxide between 1940 and 2005, Eos Trans. AGU, 89(53), Fall Meet. Suppl., Abstract A21A-0125.
34. 2O from soil emissions, inStable Isotopes and Biosphere-Atmosphere Interactions: Processes and Biological Controls, edited by L. B. Flanagan, et al., pp.69-84, doi:10.1016/B978-012088447-6/50005-2, Elsevier Academic, San Diego, Calif.
35. 2O emissions from tropical forest soils, Global Biogeochem. Cycles, 14, 525-535, doi:10.1029/1999GB001181.
36. 2O budget using stable isotopes, J. Geophys. Res., 106, 9869-9878, doi:10.1029/2000JD900809.
37. 2O formation via nitrification and denitrification from incubated Amazon forest soils, Ecol. Appl., 16, 2153-2167.
38. 2O from 1990 to 2002, J. Geophys. Res., 110, D21304, doi:10.1029/2005JD006066. (Pubitemid 41825040)
39. 2O source, Atmos. Chem. Phys., 3, 315-323.
40. Scholefield, D., J. M. B. Hawkins, and S. M. Jackson (1997), Use of a flowing helium atmosphere incubation technique to measure the effects of denitrification controls applied to intact cores of a clay soil, Soil Biol. Biochem., 29, 1337-1344, doi:10.1016/S0038-0717(97)00059-X. (Pubitemid 27389508)
41. Sigman, D. M., M. A. Altabet, R. Michener, D. C. McCorkle, B. Fry, and R. M. Holmes (1997), Natural abundance-level measurement of the nitrogen isotopic composition of oceanic nitrate: An adaptation of the ammonia diffusion method, Mar. Chem., 57, 227-242, doi:10.1016/S0304-4203(97)00009-1.
42. Silver, W. L., J. Neff, M. McGroddy, E. Veldkamp, M. Keller, and R. Cosme (2000), Effects of soil texture on belowground carbon and nutrient storage in a lowland Amazonian forest ecosystem, Ecosystems, 3, 193-209, doi:10.1007/s100210000019. (Pubitemid 30322914)
43. Snider, D. M., S. L. Schiff, and J. Spoelstra (2008), N/N and O/O stable isotope ratios of nitrous oxide produced during denitrification in temperate forest soils, Geochim. Cosmochim. Acta, 73, 877-888, doi:10.1016/j.gca.2008.11. 004.
44. 2O record spanning the penultimate déglaciation from the Vostok ice core, J. Geophys. Res., 106, 31,903-31,914, doi:10.1029/2000JD900707.
45. 2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath, Rapid Commun. Mass Spectrom., 17, 738-745, doi:10.1002/rcm.968. (Pubitemid 36373176)
46. 2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath, Rapid Commun. Mass Spectrom., 18, 1411-1412, doi:10.1002/rcm.1482. (Pubitemid 38843168)
47. Sutka, R., N. Ostrom, P. H. Ostrom, J. Breznak, H. Gandhi, A. J. Pitt, and F. Li (2006), Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances, Appl. Environ. Microbiol, 72, 638-644, doi:10.1128/AEM.72.1.638-644.2006.
48. 2 by soil cores during anaerobic incubation, Plant Soil, 181, 145-151, doi:10.1007/BF00011301.
49. Telles, E. De C. C, P. B. De Camargo, L. A. Martinelli, S. E. Trumbore, E. S. da Costa, J. Santos, N. Higuchi, and R. C. Oliveira Jr. (2003), Influence of soil texture on carbon dynamics and storage potential in tropical forest soils of Amazonia, Global Biogeochem. Cycles, 17(2), 1040, doi:10.1029/ 2002GB001953.
50. 2O isotopolo-gue production: Towards an understanding of denitrification mechanism, Eos Trans. AGU, 85(47), Fall Meet. Suppl., Abstract B11C-03.
51. Toyoda, S., andN. Yoshida (1999), Determination of nitrogen isotopomers of nitrous oxide on a modified isotope ratio mass spectrometer, Anal. Chem., 71, 4711-4718, doi:10.1021/ac9904563. (Pubitemid 29498307)
52. 2O isotopomers during porduction by denitrifiers, Soil Biol. Biochem., 37, 1535-1545, doi:10.1016/j.soilbio.2005.01.009. (Pubitemid 40793118)
53. 2O, Jpn. Natl. Inst. for Agro-Environ. Sci., Tsukuba, Japan.
54. 2O reduction in soil depend on reaction rate constant, Rapid Commun. Mass Spectrom., 21, 846-850, doi:10.1002/rcm.2915. (Pubitemid 46426803)
55. 2O in aquatic ecosystems with emphasis on denitrification, in Cycling of Reduced Gases in the Hydrosphere, edited by D. Adams et al., pp. 115-124, Schweizerbart, Stuttgart, Germany.
56. 2O from different environments, Nature, 313, 780-782, doi:10.1038/313780a0.
57. Webster, E. A., and D. W. Hopkins (1996), Nitrogen and oxygen isotope ratios of nitrous oxide emitted from soils and produced by nitrifying and denitrifying bacteria, Biol. Fertil. Soils, 22, 326-330, doi:10.1007/BF00334577.
58. 2O under different moisture conditions-A microcosm study with arable loess soil, Soil Biol. Biochem., 38, 2923-2933, doi:10.1016/j.soilbio.2006.05.003. (Pubitemid 47304015)
59. + fertilized arable soils under conditions favoring nitrification, Soil Biol. Biochem., 40, 2416-2426, doi:10.1016/j.soilbio.2008. 06.003.
60. Westley, M. B., B. N. Popp, and T. M. Rust (2007), The calibration of intramolecular nitrogen isotope distribution in nitrous oxide measured by isotope ratio mass spectrometry, Rapid Commun. Mass Spectrom., 21, 391-405, doi:10.1002/rcm.2828. (Pubitemid 46212552)
61. Williams, P. H., S. C. Jarvis, and E. Dixon (1998), Emission of nitric oxide and nitrous oxide from soil under field and laboratory conditions, Soil Biol. Biochem., 30, 1885-1893.
62. 2O in a temperate grassland following urine amendment, Rapid Commun. Mass Spectrom., 15, 1263-1269, doi:10.1002/rcm.352. (Pubitemid 32720533)
63. 2O isotopomers, Nature, 405, 330-334, doi:10.1038/35012558. (Pubitemid 30337062)
64. 2O in the eastern tropical Pacific Ocean, Nature, 307,442-444, doi:10.1038/307442a0.
65. Yuan, F., W. Ran, Q. Shen, and D. Wang (2005), Characterization of nitrifying bacteria communities of soils from different ecological regions of China by molecular and conventional methods, Biol. Fertil. Soils, 41, 22-27, doi:10.1007/s00374-004-0802-y. (Pubitemid 40099345)