Comparing the predictions of the nonlinear Poisson-Boltzmann equation and the ion size-modified Poisson-Boltzmann equation for a low-dielectric charged spherical cavity in an aqueous salt solution

Journal of Chemical Theory and Computation

Volumn 6, Issue 12, 2010, Pages 3631-3639

  Silalahi, Alexander R J ^a   Boschitsch, Alexander H ^b   Harris, Robert C ^a   Fenley, Marcia O ^a  

^a Florida State University   (United States)

^b Continuum Dynamics Inc ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 78651328563     PISSN: 15499618     EISSN: 15499626     Source Type: Journal    
DOI: 10.1021/ct1002785     Document Type: Article

References (41)

1. Boschitsch, A. H.; Fenley, M. O. J. Comput. Chem. 2004, 25, 935-955.
2. Shu-wen, W. C.; Honig, B. J. Phys. Chem. B 1997, 101, 9113-9118.
3. Misra, V. K.; Draper, D. E. J. Mol. Biol. 2000, 299, 813-825.
4. Draper, D. E.; Grilley, D.; Soto, A. M. Annu. Rev. Biophys. Biomol. Struct. 2005, 34, 221-243.
5. Allahyarov, E.; Gompper, G.; Löwen, H. Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2004, 69, 041904.
6. Wilson, R. W.; Bloomfield, V. A. Biochemistry 1979, 18, 2192-2196.
7. Grosberg, A. Y.; Nguyen, T. T.; Shklovskii, B. I. Rev. Mod. Phys. 2002, 74, 329-345.
8. Tresset, G.; Davy Cheong, W. C.; Shireen Tan, Y. L.; Boulaire, J.; Ming Lam, Y. Biophys. J. 2007, 93, 637-644.
9. Gelbart, W. M.; Bruinsma, R. F.; Pincus, P. A.; Parsegian, V. A. Phys. Today 2000, 53, 38-44.
10. Bhuiyan, L. B.; Vlachy, V.; Outhwaite, C. W. Int. Rev. Phys. Chem. 2002, 21, 1-36.
11. Lamperski, S.; Bhuiyan, L. B. J. Electroanal. Chem. 2003, 540, 79-87.
12. Netz, R. R.; Orland, H. Eur. Phys. J. E: Soft Matter Biol. Phys. 2000, 1, 203-214.
13. Azuara, C.; Orland, H.; Bon, M.; Koehl, P.; Delarue, M. Biophys. J. 2008, 95, 5587-5605.
14. Pincus, P. A.; Safran, S. A. Europhys. Lett. 1998, 42, 103-108.
15. Cervera, J.; Ramírez, P.; Manzanares, J. A.; Mafé, S. Microfluid. Nanofluid. 2009, 9, 41-53.
16. Stern, O. Z. Elektrochem 1924, 30, 508-516.
17. Grochowski, P.; Trylska, J. Biopolymers 2008, 89, 93-113.
18. Coalson, R. D.; Walsh, A. M.; Duncan, A.; Ben-Tal, N. J. Chem. Phys. 1995, 102, 4584-4594.
19. Tresset, G.; Cheong, W. C. D.; Lam, Y. M. J. Phys. Chem. B 2007, 111, 14233-14238.
20. Borukhov, I.; Andelman, D.; Orland, H. Phys. Rev. Lett. 1997, 79, 435-438.
21. Kralj-Iglic, V.; Iglic, A. J. Phys. II 1996, 6, 477-491.
22. Manciu, M.; Ruckenstein, E. Langmuir 2002, 18, 5178-5185.
23. Lue, L.; Zoeller, N.; Blankschtein, D. Langmuir 1999, 15, 3726-3730.
24. Outhwaite, C. W.; Bhuiyan, L. B. J. Chem. Soc., Faraday Trans. 2 1983, 79, 707-718.
25. Bhuiyan, L. B.; Outhwaite, C. W. J. Colloid Interface Sci. 2009, 331, 543-547.
26. Chu, V. B.; Bai, Y.; Lipfert, J.; Herschlag, D.; Doniach, S. Biophys. J. 2007, 93, 3202-3209.
27. Boda, D.; Fawcett, W. R.; Henderson, D.; Sokołowski, S. J. Chem. Phys. 2002, 116, 7170-7176.
28. Jayaram, B.; Swaminathan, S.; Beveridge, D. L.; Sharp, K.; Honig, B. Macromolecules 1990, 23, 3156-3165.
29. Chu, V. B.; Bai, Y.; Lipfert, J.; Herschlag, D.; Doniach, S. Biophys. J. 2007, 93, 3202-3209.
30. Lipfert, J.; Chu, V. B.; Bai, Y.; Herschlag, D.; Doniach, S. J. Appl. Crystallogr. 2007, 40, s229-s234.
31. Das, R.; Mills, T. T.; Kwok, L. W.; Maskel, G. S.; Millett, I. S.; Doniach, S.; Finkelstein, K. D.; Herschlag, D.; Pollack, L. Phys. Rev. Lett. 2003, 90, 188103.
32. Qiu, X.; Andresen, K.; Kwok, L. W.; Lamb, J. S.; Park, H. Y.; Pollack, L. Phys. Rev. Lett. 2007, 99, 038104.
33. Boschitsch, A. H.; Fenley, M. O. J. Comput. Chem. 2007, 28, 909-921.
34. Fu, H.; Chen, H.; Koh, C. G.; Lim, C. T. Eur. Phys. J. E: Soft Matter Biol. Phys. 2009, 29, 45-49.
35. Grilley, D.; Misra, V.; Caliskan, G.; Draper, D. E. Biochemistry 2007, 46, 10266-10278.
36. Owczarzy, R.; Moreira, B. G.; You, Y.; Behlke, M. A.; Walder, J. A. Biochemistry 2008, 47, 5336-5353.
37. Sharp, K. A.; Friedman, R. A.; Misra, V.; Hecht, J.; Honig, B. Biopolymers 1995, 36, 245-262.
38. Outhwaite, C. W.; Lamperski, S. Condens. Matter. Phys. 2001, 4, 739-748.
39. Bohinc, K.; Gimsa, J.; Kraljiglic, V.; Slivnik, T.; Iglic, A. Bioelectrochemistry 2005, 67, 91-99.
40. Kralj-Iglič, V.; Iglič, A. J. Phys. II 1996, 6, 477-491.
41. Tresset, G. Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2008, 78, 061506.