메뉴 건너뛰기




Volumn 39, Issue SUPPL. 1, 2011, Pages

VnD: A structure-centric database of disease-related SNPs and drugs

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; CONTROLLED STUDY; DRUG BINDING; GENE CONSTRUCT; GENE MUTATION; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC VARIABILITY; HEREDITY; HUMAN; MOLECULAR DOCKING; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; PROTEIN STRUCTURE; RISK ASSESSMENT; SINGLE NUCLEOTIDE POLYMORPHISM; THERMOSTABILITY; VARIATION AND DRUG DATABASE;

EID: 78651321208     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq957     Document Type: Article
Times cited : (10)

References (38)
  • 1
    • 79959503826 scopus 로고    scopus 로고
    • The international hapmap project
    • The International HapMap Consortium
    • The International HapMap Consortium (2003) The International HapMap Project. Nature, 426, 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 3
    • 57649232146 scopus 로고    scopus 로고
    • An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
    • Yang,J.O., Hwang,S., Oh,J., Bhak,J. and Sohn,T.K. (2008) An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. BMC Bioinformatics, 9(Suppl. 12), S19.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 12
    • Yang, J.O.1    Hwang, S.2    Oh, J.3    Bhak, J.4    Sohn, T.K.5
  • 9
    • 0035324932 scopus 로고    scopus 로고
    • Comparison of the NCI open database with seven large chemical structural databases
    • Voigt,J.H., Bienfait,B., Wang,S. and Nicklaus,M.C. (2001) Comparison of the NCI open database with seven large chemical structural databases. J. Chem. Inf. Comput. Sci., 41, 702-712.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 702-712
    • Voigt, J.H.1    Bienfait, B.2    Wang, S.3    Nicklaus, M.C.4
  • 10
    • 0031023448 scopus 로고    scopus 로고
    • Quality control by the Society of hair testing
    • Sachs,H. (1997) Quality control by the Society of hair testing. Forensic Sci. Int., 84, 145-150.
    • (1997) Forensic Sci. Int. , vol.84 , pp. 145-150
    • Sachs, H.1
  • 11
    • 1842790495 scopus 로고    scopus 로고
    • Calculating similarities between biological activities in the MDL Drug Data Report database
    • Sheridan,R.P. and Shpungin,J. (2004) Calculating similarities between biological activities in the MDL Drug Data Report database. J. Chem. Inf. Comput. Sci., 44, 727-740.
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 727-740
    • Sheridan, R.P.1    Shpungin, J.2
  • 12
    • 33947716119 scopus 로고    scopus 로고
    • A semiempirical free energy force field with charge-based desolvation
    • Huey,R., Morris,G.M., Olson,A.J. and Goodsell,D.S. (2007) A semiempirical free energy force field with charge-based desolvation. J. Comput. Chem., 28, 1145-1152.
    • (2007) J. Comput. Chem. , vol.28 , pp. 1145-1152
    • Huey, R.1    Morris, G.M.2    Olson, A.J.3    Goodsell, D.S.4
  • 13
    • 74049093947 scopus 로고    scopus 로고
    • Application of the PM6 semi-empirical method to modeling proteins enhances docking accuracy of AutoDock
    • Bikadi,Z. and Hazai,E. (2009) Application of the PM6 semi-empirical method to modeling proteins enhances docking accuracy of AutoDock. J. Cheminformatics, 1, 15.
    • (2009) J. Cheminformatics , vol.1 , pp. 15
    • Bikadi, Z.1    Hazai, E.2
  • 15
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh,A., Scott,A.F., Amberger,J.S., Bocchini,C.A. and McKusick,V.A. (2005) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res., 33, D514-D517.
    • (2005) Nucleic Acids Res. , vol.33
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 17
    • 0345863927 scopus 로고    scopus 로고
    • The unified medical language system (UMLS): Integrating biomedical terminology
    • Bodenreider,O. (2004) The Unified Medical Language System (UMLS): Integrating biomedical terminology. Nucleic Acids Res., 32, D267-D270.
    • (2004) Nucleic Acids Res. , vol.32
    • Bodenreider, O.1
  • 18
    • 47649090861 scopus 로고    scopus 로고
    • Identification of SNP markers for common CNV regions and association analysis of risk of subarachnoid aneurysmal hemorrhage in Japanese population
    • Bae,J.S., Cheong,H.S., Kim,J.O., Lee,S.O., Kim,E.M., Lee,H.W., Kim,S., Kim,J.W., Cui,T., Inoue,I. et al. (2008) Identification of SNP markers for common CNV regions and association analysis of risk of subarachnoid aneurysmal hemorrhage in Japanese population. Biochem. Biophys. Res. Commun., 373, 593-596.
    • (2008) Biochem. Biophys. Res. Commun. , vol.373 , pp. 593-596
    • Bae, J.S.1    Cheong, H.S.2    Kim, J.O.3    Lee, S.O.4    Kim, E.M.5    Lee, H.W.6    Kim, S.7    Kim, J.W.8    Cui, T.9    Inoue, I.10
  • 22
    • 40549098736 scopus 로고    scopus 로고
    • UniProtKB/Swiss-Prot: The manually annotated section of the uniprot knowledgebase
    • Boutet,E., Lieberherr,D., Tognolli,M., Schneider,M. and Bairoch,A. (2007) UniProtKB/Swiss-Prot: The manually annotated section of the UniProt KnowledgeBase. Methods Mol. Biol., 406, 89-112.
    • (2007) Methods Mol. Biol. , vol.406 , pp. 89-112
    • Boutet, E.1    Lieberherr, D.2    Tognolli, M.3    Schneider, M.4    Bairoch, A.5
  • 28
    • 0345059376 scopus 로고    scopus 로고
    • Announcing the worldwide Protein Data Bank
    • DOI 10.1038/nsb1203-980
    • Berman,H., Henrick,K. and Nakamura,H. (2003) Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10, 980. (Pubitemid 37500485)
    • (2003) Nature Structural Biology , vol.10 , Issue.12 , pp. 980
    • Berman, H.1    Henrick, K.2    Nakamura, H.3
  • 29
    • 0141978673 scopus 로고    scopus 로고
    • Comparative protein structure modeling by iterative alignment, model building and model assessment
    • John,B. and Sali,A. (2003) Comparative protein structure modeling by iterative alignment, model building and model assessment. Nucleic Acids Res., 31, 3982-3992.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3982-3992
    • John, B.1    Sali, A.2
  • 30
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: Predicting stability changes upon mutation from the protein sequence or structure
    • Capriotti,E., Fariselli,P. and Casadio,R. (2005) I-Mutant2.0: Predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res., 33, W306-W310.
    • (2005) Nucleic Acids Res. , vol.33
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 31
    • 3142658015 scopus 로고    scopus 로고
    • Following ligand binding and ligand reactions in proteins via Raman crystallography
    • Carey,P.R. and Dong,J. (2004) Following ligand binding and ligand reactions in proteins via Raman crystallography. Biochemistry, 43, 8885-8893.
    • (2004) Biochemistry , vol.43 , pp. 8885-8893
    • Carey, P.R.1    Dong, J.2
  • 32
    • 41149141455 scopus 로고    scopus 로고
    • Predicting gene ontology functions from protein's regional surface structures
    • Liu,Z.P., Wu,L.Y., Wang,Y., Chen,L. and Zhang,X.S. (2007) Predicting gene ontology functions from protein's regional surface structures. BMC Bioinformatics, 8, 475.
    • (2007) BMC Bioinformatics , vol.8 , pp. 475
    • Liu, Z.P.1    Wu, L.Y.2    Wang, Y.3    Chen, L.4    Zhang, X.S.5
  • 34
    • 0345863841 scopus 로고    scopus 로고
    • TopoSNP: A topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association
    • Stitziel,N.O., Binkowski,T.A., Tseng,Y.Y., Kasif,S. and Liang,J. (2004) topoSNP: A topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Res., 32, D520-D522.
    • (2004) Nucleic Acids Res. , vol.32
    • Stitziel, N.O.1    Binkowski, T.A.2    Tseng, Y.Y.3    Kasif, S.4    Liang, J.5
  • 35
    • 0031370977 scopus 로고    scopus 로고
    • LIGSITE: Automatic and efficient detection of potential small molecule-binding sites in proteins
    • Hendlich,M., Rippmann,F. and Barnickel,G. (1997) LIGSITE: Automatic and efficient detection of potential small molecule-binding sites in proteins. J. Mol. Graph Model, 15, 359-363, 389.
    • (1997) J. Mol. Graph Model , vol.15 , Issue.359-363 , pp. 389
    • Hendlich, M.1    Rippmann, F.2    Barnickel, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.