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Volumn 39, Issue SUPPL. 1, 2011, Pages

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CIONA INTESTINALIS; CIONA INTESTINALIS PROTEIN DATABASE 2.5; COMPUTER INTERFACE; COMPUTER PROGRAM; DEVELOPMENTAL BIOLOGY; DEVELOPMENTAL STAGE; EVOLUTION; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE SEQUENCE; INFORMATION PROCESSING; INTERNET; MASS SPECTROMETRY; MEDICAL RESEARCH; MICROARRAY ANALYSIS; NOMENCLATURE; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEOMICS; TRANSCRIPTOMICS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 78651274779     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1144     Document Type: Article
Times cited : (28)

References (36)
  • 1
    • 0002907777 scopus 로고
    • The organization and cell lineage of the ascidian egg
    • Conklin, E.G. (1905) The organization and cell lineage of the ascidian egg. J. Acad. Nat. Sci., Philadelphia., 13, 1-119.
    • (1905) J. Acad. Nat. Sci. Philadelphia. , vol.13 , pp. 1-119
    • Conklin, E.G.1
  • 2
    • 0037677689 scopus 로고    scopus 로고
    • Ciona intestinalis: An emerging model for whole-genome analyses
    • Satoh, N., Satou, Y., Davidson, B. and Levine, M. (2003) Ciona intestinalis: An emerging model for whole-genome analyses. Trends Genet., 19, 376-381.
    • (2003) Trends Genet. , vol.19 , pp. 376-381
    • Satoh, N.1    Satou, Y.2    Davidson, B.3    Levine, M.4
  • 3
    • 37549061826 scopus 로고    scopus 로고
    • Subdiffraction imaging through the selective donut-mode depletion of thermally stable photoswitchable fluorophores: Numerical analysis and application to the fluorescent protein Dronpa
    • Dedecker, P., Hotta, J., Flors, C., Sliwa, M., Uji-i, H., Roeffaers, M.B., Ando, R., Mizuno, H., Miyawaki, A. and Hofkens, J. (2007) Subdiffraction imaging through the selective donut-mode depletion of thermally stable photoswitchable fluorophores: numerical analysis and application to the fluorescent protein Dronpa. J. Am. Chem. Soc., 129, 16132-16141.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 16132-16141
    • Dedecker, P.1    Hotta, J.2    Flors, C.3    Sliwa, M.4    Uji-i, H.5    Roeffaers, M.B.6    Ando, R.7    Mizuno, H.8    Miyawaki, A.9    Hofkens, J.10
  • 4
    • 0034898465 scopus 로고    scopus 로고
    • Action of morpholinos in Ciona embryos
    • Satou, Y., Imai, K.S. and Satoh, N. (2001) Action of morpholinos in Ciona embryos. Genesis, 30, 103-106.
    • (2001) Genesis , vol.30 , pp. 103-106
    • Satou, Y.1    Imai, K.S.2    Satoh, N.3
  • 5
    • 34447574707 scopus 로고    scopus 로고
    • Functional proteomics in Ciona intestinalis: A breakthrough in the exploration of the molecular and cellular mechanism of ascidian development
    • Inaba, K., Nomura, M., Nakajima, A. and Hozumi, A. (2007) Functional proteomics in Ciona intestinalis: A breakthrough in the exploration of the molecular and cellular mechanism of ascidian development. Dev. Dyn., 236, 1782-1789.
    • (2007) Dev. Dyn. , vol.236 , pp. 1782-1789
    • Inaba, K.1    Nomura, M.2    Nakajima, A.3    Hozumi, A.4
  • 6
    • 0347135657 scopus 로고    scopus 로고
    • Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis
    • Yamada, L., Shoguchi, E., Wada, S., Kobayashi, K., Mochizuki, Y., Satou, Y. and Satoh, N. (2003) Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis. Development, 130, 6485-6495.
    • (2003) Development , vol.130 , pp. 6485-6495
    • Yamada, L.1    Shoguchi, E.2    Wada, S.3    Kobayashi, K.4    Mochizuki, Y.5    Satou, Y.6    Satoh, N.7
  • 7
    • 23944515753 scopus 로고    scopus 로고
    • Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis
    • Yamada, L., Kobayashi, K., Satou, Y. and Satoh, N. (2005) Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis. Dev. Biol., 284, 536-550.
    • (2005) Dev. Biol. , vol.284 , pp. 536-550
    • Yamada, L.1    Kobayashi, K.2    Satou, Y.3    Satoh, N.4
  • 9
    • 0037626990 scopus 로고    scopus 로고
    • Large scale EST analyses in Ciona intestinalis: Its application as Northern blot analyses
    • Satou, Y., Kawashima, T., Kohara, Y. and Satoh, N. (2003) Large scale EST analyses in Ciona intestinalis: its application as Northern blot analyses. Dev. Genes Evol., 213, 314-318.
    • (2003) Dev. Genes Evol. , vol.213 , pp. 314-318
    • Satou, Y.1    Kawashima, T.2    Kohara, Y.3    Satoh, N.4
  • 11
    • 55349149407 scopus 로고    scopus 로고
    • Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: New insight into intron and operon populations
    • Satou, Y., Mineta, K., Ogasawara, M., Sasakura, Y., Shoguchi, E., Ueno, K., Yamada, L., Matsumoto, J., Wasserscheid, J., Dewar, K. et al. (2008) Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations. Genome Biol., 9, R152.
    • (2008) Genome Biol. , vol.9
    • Satou, Y.1    Mineta, K.2    Ogasawara, M.3    Sasakura, Y.4    Shoguchi, E.5    Ueno, K.6    Yamada, L.7    Matsumoto, J.8    Wasserscheid, J.9    Dewar, K.10
  • 12
    • 0038610809 scopus 로고    scopus 로고
    • Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis
    • Sasakura, Y., Awazu, S., Chiba, S. and Satoh, N. (2003) Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis. Proc. Natl Acad. Sci. USA, 100, 7726-7730.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 7726-7730
    • Sasakura, Y.1    Awazu, S.2    Chiba, S.3    Satoh, N.4
  • 15
    • 40049098664 scopus 로고    scopus 로고
    • Molecular characterization of axonemal proteins and signaling molecules responsible for chemoattractant-induced sperm activation in Ciona intestinalis
    • Hozumi, A., Padma, P., Toda, T., Ide, H. and Inaba, K. (2008) Molecular characterization of axonemal proteins and signaling molecules responsible for chemoattractant-induced sperm activation in Ciona intestinalis. Cell Motil. Cytoskeleton, 65, 249-267.
    • (2008) Cell Motil. Cytoskeleton , vol.65 , pp. 249-267
    • Hozumi, A.1    Padma, P.2    Toda, T.3    Ide, H.4    Inaba, K.5
  • 16
    • 58149131208 scopus 로고    scopus 로고
    • Proteomic profiles of embryonic development in the ascidian Ciona intestinalis
    • Nomura, M., Nakajima, A. and Inaba, K. (2009) Proteomic profiles of embryonic development in the ascidian Ciona intestinalis. Dev. Biol., 325, 468-481.
    • (2009) Dev. Biol. , vol.325 , pp. 468-481
    • Nomura, M.1    Nakajima, A.2    Inaba, K.3
  • 17
    • 34447569231 scopus 로고    scopus 로고
    • A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva
    • Hotta, K., Mitsuhara, K., Takahashi, H., Inaba, K., Oka, K., Gojobori, T. and Ikeo, K. (2007) A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva. Dev. Dyn., 236, 1790-1805.
    • (2007) Dev. Dyn. , vol.236 , pp. 1790-1805
    • Hotta, K.1    Mitsuhara, K.2    Takahashi, H.3    Inaba, K.4    Oka, K.5    Gojobori, T.6    Ikeo, K.7
  • 20
    • 2942546538 scopus 로고    scopus 로고
    • Local database and the search program for proteomic analysis of sperm proteins in the ascidian Ciona intestinalis
    • Hozumi, A., Satouh, Y., Ishibe, D., Kaizu, M., Konno, A., Ushimaru, Y., Toda, T. and Inaba, K. (2004) Local database and the search program for proteomic analysis of sperm proteins in the ascidian Ciona intestinalis. Biochem. Biophys. Res. Commun., 319, 1241-1246.
    • (2004) Biochem. Biophys. Res. Commun. , vol.319 , pp. 1241-1246
    • Hozumi, A.1    Satouh, Y.2    Ishibe, D.3    Kaizu, M.4    Konno, A.5    Ushimaru, Y.6    Toda, T.7    Inaba, K.8
  • 21
    • 75849158230 scopus 로고    scopus 로고
    • The Gene Ontology in 2010: Extensions and refinements
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res., 38, D331-D335.
    • (2010) Nucleic Acids Res. , vol.38
  • 26
    • 75549084894 scopus 로고    scopus 로고
    • PANTHER version 7: Improved phylogenetic trees, orthologs and collaboration with the gene ontology consortium
    • Mi, H., Dong, Q., Muruganujan, A., Gaudet, P., Lewis, S. and Thomas, P.D. (2010) PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res., 38, D204-D210.
    • (2010) Nucleic Acids Res. , vol.38
    • Mi, H.1    Dong, Q.2    Muruganujan, A.3    Gaudet, P.4    Lewis, S.5    Thomas, P.D.6
  • 32
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G. and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol., 305, 567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 35
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 36
    • 0033810049 scopus 로고    scopus 로고
    • Modeling of loops in protein structures
    • Fiser, A., Do, R.K. and Sali, A. (2000) Modeling of loops in protein structures. Protein Sci., 9, 1753-1773.
    • (2000) Protein Sci. , vol.9 , pp. 1753-1773
    • Fiser, A.1    Do, R.K.2    Sali, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.