Construction of cDNA library and preliminary analysis of expressed sequence tags from green microalga Ankistrodesmus convolutus Corda

Molecular Biology Reports

Volumn 38, Issue 1, 2011, Pages 177-182

  Thanh, Tran ^a,b   Chi, Vu Thi Quynh ^a,b   Abdullah, Mohd Puad ^a   Omar, Hishamuddin ^a   Noroozi, Mostafa ^a   Ky, Huynh ^a   Napis, Suhaimi ^a  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b Rubber Research Institute of Vietnam   (Viet Nam)

Author keywords

Ankistrodesmus convolutus; cDNA library construction; Expressed sequence tags; Green microalgae

Indexed keywords

CHLOROPHYLL A; CHLOROPHYLL B; COMPLEMENTARY DNA; DOUBLE STRANDED DNA; RIBOSOME RNA; RIBULOSEBISPHOSPHATE CARBOXYLASE;

ANKISTRODESMUS CONVOLUTUS; ARTICLE; CATALYSIS; DNA LIBRARY; EXPRESSED SEQUENCE TAG; GENE AMPLIFICATION; GENE CONSTRUCT; GENE EXPRESSION; GENE SEQUENCE; GREEN ALGA; LIGHT HARVESTING SYSTEM; NONHUMAN; PHOTOSYNTHESIS; PHOTOSYSTEM I; PROTEIN FUNCTION; SEQUENCE ANALYSIS; STRESS;

DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; MICROALGAE; SEQUENCE ANALYSIS, DNA;

ALGAE; ANKISTRODESMUS CONVOLUTUS;

EID: 78651071292     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0092-4     Document Type: Article

References (29)

1. CB Field MJ Behrenfeld JT Randerson P Falkowski 1998 Primary production of the biosphere: integrating terrestrial and oceanic components Science 28 237 240 10.1126/science.281.5374.237 (Pubitemid 28334501)
2. Day JG (1999) Conservation strategies for algae. In: Benson EE (ed) Plant Conservation Biotechnology. Taylor and Francis Ltd, London, pp 111-124
3. A Hallmann 2007 Algal transgenics and biotechnology Transgenic Plant J 1 81 98
4. Chu WL, Phang SM, Goh SH, Blakebrough N (1992) Promising microalgae for production of useful chemicals. In: Shaari K, Kadir AA, Ali ARM (eds) Proceeding of the Conference on Medicinal Products from Tropical Rain Forests. Forest Research Institute of Malaysia, Kuala Lumpur, pp 338-345
5. WL Chu SM Phang SH Goh 1995 Influence of carbon source on growth, biochemical composition and pigmentation of Ankistrodesmus convolutus J Appl Phycol 7 59 64 1:CAS:528:DyaK2MXkvF2ju7g%3D 10.1007/BF00003551
6. SY Ying 2004 Complementary DNA libraries: an overview Mol Biotechnol 27 245 252 1:CAS:528:DC%2BD2cXms1elsLo%3D 10.1385/MB:27:3:245 15247497 (Pubitemid 41490592)
7. S Rudd 2003 Expressed sequence tags: alternative or complement to whole genome sequence Trends Plant Sci 8 321 329 1:CAS:528:DC%2BD3sXls1CjtL0%3D 10.1016/S1360-1385(03)00131-6 12878016 (Pubitemid 36996633)
8. MD Adams JM Kelley JD Gocayne, et al. 1991 Complementary DNA sequencing: expressed sequence tags and human genome project Science 252 1651 1656 1:CAS:528:DyaK3MXkvVKmuro%3D 10.1126/science.2047873 2047873
9. Zhuang J, Xiong AS, Peng RH, Gao F, Zhu B, Zhang J, Fu XY, Jin XF, Chen JM, Zhang Z, Qiao YS, Yao QH (2009) Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes. Mol Biol Rep. doi: 10.1007/s11033-009-9763-4
10. J Shrager C Hause C Chang, et al. 2003 Chlamydomonas reinhardtii genome project. A guide to the generation and use of the cDNA information Plant Physiol 131 401 408 10.1104/pp.016899 12586865 (Pubitemid 36219503)
11. Y Liu DR Qiao HB Zheng XL Dai LH Bai J Zeng Y Cao 2008 Cloning and sequence analysis of the gene encoding 19-kD subunit of Complex I from Dunaliella salina Mol Biol Rep 35 397 403 1:CAS:528:DC%2BD1cXptVertLk%3D 10.1007/s11033-007-9099-x 17530440
12. IM Henry MD Wilkinson JM Hernandez Z Schwarz-Sommer E Grotewold DF Mandoli 2004 Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum BMC Plant Biol 4 3 10.1186/1471-2229-4-3 15070428 (Pubitemid 38761963)
13. T Thanh H Omar MP Abdullah VTQ Chi M Noroozi H Ky S Napis 2009 Rapid and effective method of RNA isolation from green microalga Ankistrodesmus convolutus Mol Biotechnol 43 148 153 1:CAS:528:DC%2BD1MXhtFCitrrI 10.1007/s12033-009-9182- 8 19507070
14. WD Benton RW Davis 1977 Screening λgt recombinant clones by hybridization to single plaques in situ Science 196 180 1:STN:280: DyaE2s7ltVOmuw%3D%3D 10.1126/science.322279 322279
15. Sambrook J, Russell DW (2001) Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor Lab Press, New York
16. GR Franco MD Adams MB Soares AJG Simpson JC Venter SDJ Pena 1995 Identification of new Schistosoma mansoni genes by the EST strategy using a directional cDNA library Gene 152 141 147 1:CAS:528:DyaK2MXjtFSgs7k%3D 10.1016/0378-1119(94)00747-G 7835692
17. S Altschul T Madden A Schaffer J Zhang Z Zhang V Miller D Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 1:CAS:528:DyaK2sXlvFyhu7w%3D 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
18. PD Nguyen CL Ho JA Harikrishna MCVL Wong RA Rahim 2006 Generation and analysis of expressed sequence tags from the mangrove plant, Acanthus ebracteatus Vahl Tree Genet Genomes 2 196 201 10.1007/s11295-006-0044-2 (Pubitemid 44327012)
19. JD Thompson DG Higgin TJ Gibson 1994 Clustal W improving the sensitive of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weigh matrix choice Nucleic Acids Res 22 4673 4680 1:CAS:528:DyaK2MXitlSgu74%3D 10.1093/nar/22.22.4673 7984417
20. T Manzara W Gruissem 1988 Organization and expression of the genes encoding ribulose-1, 5-bisphosphate carboxylase in higher plants Photosynth Res 16 117 139 1:CAS:528:DyaL1cXltVGlsrg%3D 10.1007/BF00039489
21. C Dean E Pichersky P Dunsmuir 1989 Structure, evolution, and regulation of RbcS genes in higher plants Annu Rev Plant Physiol Plant Mol Biol 40 415 439 1:CAS:528:DyaL1MXktlCht7Y%3D 10.1146/annurev.pp.40.060189.002215
22. H Teramoto A Nakamori J Minagawa T Ono 2002 Light-intensity-dependent expression of Lhc gene family encoding light-harvesting chlorophyll-a/b proteins of photosystem II in Chlamydomonas reinhardtii Plant Physiol 130 325 333 1:CAS:528:DC%2BD38XntFOrt7w%3D 10.1104/pp.004622 12226512
23. C Chen LH Bai DR Qiao H Xu GL Dong K Ruan F Huang Y Cao 2008 Cloning and expression study of a putative carotene biosynthesis related (cbr) gene from the halotolerant green alga Dunaliella salina Mol Biol Rep 35 321 327 1:CAS:528:DC%2BD1cXptVertLc%3D 10.1007/s11033-007-9089-z 17562223
24. SP Mayfield M Rahire G Frank H Zuber JD Rochaix 1987 Expression of the nuclear gene encoding oxygen-evolving enhancer protein 2 is required for high levels of photosynthetic oxygen evolution in Chlamydomonas reinhardtii Proc Natl Acad Sci USA 84 749 753 1:CAS:528:DyaL2sXhslSjs7Y%3D 10.1073/pnas.84.3.749 3468511
25. K Sharma AK Mishra RS Misra 2009 Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae Mol Biol Rep 36 1291 1297 1:CAS:528:DC%2BD1MXmtlOnsL8%3D 10.1007/s11033-008-9311-7 18622758
26. Shao ZT, Cong X, Yuan JD et al. (2009) Construction and characterization of a cDNA library from head kidney of Japanese sea bass (Lateolabrax japonicus). Mol Biol Rep. doi: 10.1007/s11033-009-9536-0
27. MD Adams AR Kerlavage RD Fleischmann, et al. 1995 Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence Nature 377 3 174 1:CAS:528:DyaK2MXoslOrtLw%3D 7566098
28. GR Franco EM Rabelo VA Azevedo, et al. 1997 Evaluation of cDNA libraries from different developmental stages of Schistosoma mansoni for production of expressed sequence tags (ESTs) DNA Res 4 231 240 1:CAS:528:DyaK2sXlsFemsbc%3D 10.1093/dnares/4.3.231 9330911
29. S Lievens S Goormachtig M Holsters 2001 A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward Nucleic Acids Res 29 3459 3468 1:CAS:528:DC%2BD3MXotlWhtbo%3D 10.1093/nar/29.17.3459 11522814