메뉴 건너뛰기




Volumn 7, Issue 6, 2010, Pages 303-310

Surface plasmon resonance (SPR) spectrometry as a tool to analyze nucleic acid-protein interactions in crude cellular extracts

Author keywords

Affinity enrichment; Binding; Biosensor; Kinetics; Label free; Mass; Nucleic acid protein interactions; Photons; Probe; SPR spectroscopy

Indexed keywords

CELL EXTRACT; SINGLE STRANDED DNA;

EID: 78650952259     PISSN: 11096535     EISSN: 17906245     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (28)

References (45)
  • 1
    • 45749124039 scopus 로고    scopus 로고
    • Mining the oncoproteome and studying molecular interactions for biomarker development by 2DE, ChIP and SPR technologies
    • Ahmed FE: Mining the oncoproteome and studying molecular interactions for biomarker development by 2DE, ChIP and SPR technologies. Exp Rev Proteomics 5: 469-496, 2008.
    • (2008) Exp Rev Proteomics , vol.5 , pp. 469-496
    • Ahmed, F.E.1
  • 2
    • 0344177897 scopus 로고    scopus 로고
    • Present and future of surface plasmon resonance biosensors
    • Homola J: Present and future of surface plasmon resonance biosensors. Anal Bioanl Chem 377: 528-539, 2003.
    • (2003) Anal Bioanl Chem , vol.377 , pp. 528-539
    • Homola, J.1
  • 3
    • 33845640840 scopus 로고    scopus 로고
    • Expression microarray proteomics and the search for cancer biomarkers
    • Ahmed FE: Expression microarray proteomics and the search for cancer biomarkers. Curr Genom 7: 399-426, 2006.
    • (2006) Curr Genom , vol.7 , pp. 399-426
    • Ahmed, F.E.1
  • 5
    • 0034431122 scopus 로고    scopus 로고
    • Surface plasmon resonance-based immunoassays
    • DOI 10.1006/meth.2000.1039
    • Mullett WM, Li EP and Yeung JM: Surface plasmon resonance-based immunoassays. Methods 22: 77-91, 2000. (Pubitemid 32896734)
    • (2000) Methods , vol.22 , Issue.1 , pp. 77-91
    • Mullett, W.M.1    Lai, E.P.C.2    Yeung, J.M.3
  • 6
    • 0038558409 scopus 로고    scopus 로고
    • Surface plasmon resonance: Principles, methods and applications in biomedical sciences
    • Englebienne P, Van Hoonacker A and Verhas M: Surface plasmon resonance: principles, methods and applications in biomedical sciences. Spectroscopy 17: 255-273, 2003.
    • (2003) Spectroscopy , vol.17 , pp. 255-273
    • Englebienne, P.1    Van Hoonacker, A.2    Verhas, M.3
  • 7
    • 13844306682 scopus 로고    scopus 로고
    • Surface plasmon resonance/mass spectrometry interface
    • Grote J, Dankbar N, Gedig E and Koenig S: Surface plasmon resonance/mass spectrometry interface. Anal Chem 77: 1157-1162, 2005.
    • (2005) Anal Chem , vol.77 , pp. 1157-1162
    • Grote, J.1    Dankbar, N.2    Gedig, E.3    Koenig, S.4
  • 8
    • 78650951644 scopus 로고    scopus 로고
    • Why you should be using more SPR biosensor technology
    • Rich RL and Myszka DG: Why you should be using more SPR biosensor technology. Drug Discov Today Technol 5: 1-8, 2004.
    • (2004) Drug Discov Today Technol , vol.5 , pp. 1-8
    • Rich, R.L.1    Myszka, D.G.2
  • 9
    • 0035975878 scopus 로고    scopus 로고
    • Use of biosensors for microaffinity purification: An integrated approach to proteomics
    • Catimel B, Rothacker J and Nice E: Use of biosensors for microaffinity purification: an integrated approach to proteomics. J Biochem Biophys Methods 49: 289-312, 2001.
    • (2001) J Biochem Biophys Methods , vol.49 , pp. 289-312
    • Catimel, B.1    Rothacker, J.2    Nice, E.3
  • 10
    • 33947491558 scopus 로고    scopus 로고
    • Surface plasmon resonance immunosensors for human cardiac troponin T based on self-assembled monolayer
    • Dutra RF, Mendes RK, Lins da Silva V and Kubota LT: Surface plasmon resonance immunosensors for human cardiac troponin T based on self-assembled monolayer. J Pharm Biomed Anal 43: 1744-1750, 2007.
    • (2007) J Pharm Biomed Anal , vol.43 , pp. 1744-1750
    • Dutra, R.F.1    Mendes, R.K.2    Lins Da Silva, V.3    Kubota, L.T.4
  • 11
    • 45749101309 scopus 로고    scopus 로고
    • Surface plasmon resonance mass spectrometry in proteomics
    • Visser NFC and Heck AJR: Surface plasmon resonance mass spectrometry in proteomics. Exp Rev Proteomics 5: 425-433, 2008.
    • (2008) Exp Rev Proteomics , vol.5 , pp. 425-433
    • Visser, N.F.C.1    Heck, A.J.R.2
  • 12
    • 0031033803 scopus 로고    scopus 로고
    • BIA/MS: Interfacing biomolecular interaction analysis with mass spectrometry
    • Krone JR, Nelson RW, Dogruel D, Williams P and Granzow R: BIA/MS: Interfacing biomolecular interaction analysis with mass spectrometry. Anal Biochem 244: 124-132, 1997.
    • (1997) Anal Biochem , vol.244 , pp. 124-132
    • Krone, J.R.1    Nelson, R.W.2    Dogruel, D.3    Williams, P.4    Granzow, R.5
  • 13
    • 0026045194 scopus 로고
    • Real-time biospecific interaction analysis using surface plasmon resonance and a sensor chip technology
    • Jönsson U, Fägerstam L and Ivarsson B: Real-time biospecific interaction analysis using surface plasmon resonance and a sensor chip technology. BioTechniques 11: 620-627, 1991.
    • (1991) BioTechniques , vol.11 , pp. 620-627
    • Jönsson, U.1    Fägerstam, L.2    Ivarsson, B.3
  • 14
    • 0033667738 scopus 로고    scopus 로고
    • Advances in surface plasmon resonance biosensor analysis
    • Rich RL and Myszka DG: Advances in surface plasmon resonance biosensor analysis. J Mol Recog 13: 388-407, 2000.
    • (2000) J Mol Recog , vol.13 , pp. 388-407
    • Rich, R.L.1    Myszka, D.G.2
  • 15
    • 0014421995 scopus 로고
    • Defective repair replication of DNA in xeroderma pigmentosum
    • Cleaver JE: Defective repair replication of DNA in xeroderma pigmentosum. Nature 218: 652-656, 1968.
    • (1968) Nature , vol.218 , pp. 652-656
    • Cleaver, J.E.1
  • 16
    • 0023803543 scopus 로고
    • Xeroderma pigmentosum group E cells lack a nuclear factor that binds to damaged DNA
    • Chu G and Chang E: Xeroderma pigmentosum group E cells lack a nuclear factor that binds to damaged DNA. Science 242: 564-567, 1988.
    • (1988) Science , vol.242 , pp. 564-567
    • Chu, G.1    Chang, E.2
  • 17
    • 0026808227 scopus 로고
    • Biochemical heterogeneity in xeroderma pigmentosum complementation group E
    • Keeney S, Wein H and Linn S: Biochemical heterogeneity in xeroderma pigmentosum complementation group E. Mutat Res 273: 49-56, 1992.
    • (1992) Mutat Res , vol.273 , pp. 49-56
    • Keeney, S.1    Wein, H.2    Linn, S.3
  • 19
    • 0029165064 scopus 로고
    • Chromosomal localization and cDNA cloning of the genes (DDBl and DDB2) for the p127 and p48 subunits of a human damage specific DNA binding protein
    • Dualan R, Keeney S, Nichols AF, Admon A and Linn S: Chromosomal localization and cDNA cloning of the genes (DDBl and DDB2) for the p127 and p48 subunits of a human damage specific DNA binding protein. Genomics 29: 62-69, 1995.
    • (1995) Genomics , vol.29 , pp. 62-69
    • Dualan, R.1    Keeney, S.2    Nichols, A.F.3    Admon, A.4    Linn, S.5
  • 20
    • 0030050568 scopus 로고    scopus 로고
    • Isolation of a cDNA encoding a UV-damaged DNA binding factor defective in xeroderma pigmentosum group E cells
    • Hwang BJ, Liao JC and Chu G: Isolation of a cDNA encoding a UV-damaged DNA binding factor defective in xeroderma pigmentosum group E cells. Mutat Res 362: 105-117, 1996.
    • (1996) Mutat Res , vol.362 , pp. 105-117
    • Hwang, B.J.1    Liao, J.C.2    Chu, G.3
  • 21
    • 0034615670 scopus 로고    scopus 로고
    • Studies of the murine DDB1 and DDB2 genes
    • Zolezzi F and Linn S: Studies of the murine DDB1 and DDB2 genes. Gene 245: 151-159, 2000.
    • (2000) Gene , vol.245 , pp. 151-159
    • Zolezzi, F.1    Linn, S.2
  • 22
    • 0027203512 scopus 로고
    • A 127 kDa component of a UV-damaged DNA-binding complex which is defective in some xeroderma pigmentosum group E patients is homologous to a slime mold protein
    • Takao M, Abramic M, Moors M Jr, Ortin VR, Wootton JC, McLenigan M, Levine AS and Protic M: A 127 kDa component of a UV-damaged DNA-binding complex which is defective in some xeroderma pigmentosum group E patients is homologous to a slime mold protein. Nucl Acids Res 21: 4111-4118, 1993.
    • (1993) Nucl Acids Res , vol.21 , pp. 4111-4118
    • Takao, M.1    Abramic, M.2    Moors Jr., M.3    Ortin, V.R.4    Wootton, J.C.5    McLenigan, M.6    Levine, A.S.7    Protic, M.8
  • 23
    • 0000516293 scopus 로고    scopus 로고
    • Expression of the p48 xeroderma pigmentosum gene is p53-dependent and is involved in global genomic repair
    • Hwang BJ, Ford JM, Hanawalt PC and Chu G: Expression of the p48 xeroderma pigmentosum gene is p53-dependent and is involved in global genomic repair. Proc Natl Acad Sci USA 96: 424-428, 1999.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 424-428
    • Hwang, B.J.1    Ford, J.M.2    Hanawalt, P.C.3    Chu, G.4
  • 24
    • 0031962186 scopus 로고    scopus 로고
    • DDB a putative DNA repair protein can function as a transcriptional partner of E2F1
    • Hayes S, Shiyanov P, Chen X and Raychaudhuri P: DDB a putative DNA repair protein can function as a transcriptional partner of E2F1. Mol Cell Biol 18: 240-249, 1998.
    • (1998) Mol Cell Biol , vol.18 , pp. 240-249
    • Hayes, S.1    Shiyanov, P.2    Chen, X.3    Raychaudhuri, P.4
  • 25
    • 33646810079 scopus 로고    scopus 로고
    • Gene-gene, gene-environment & multiple interactions in colorectal cancer
    • Ahmed FE: Gene-gene, gene-environment & multiple interactions in colorectal cancer. J Env Sci Health C 24: 1-101, 2006.
    • (2006) J Env Sci Health C , vol.24 , pp. 1-101
    • Ahmed, F.E.1
  • 27
    • 0017064628 scopus 로고
    • Human colonic adenocarcinoma cells. I. Establishment and description of a new line
    • Tom BH, Rutzky LP, Jakstys MM, Oyasu R, Kaye CI and Kalhan BD: Human colonic adenocarcinoma cells. I. Establishment and description of a new line. In Vitro 12: 180-191, 1976.
    • (1976) In Vitro , vol.12 , pp. 180-191
    • Tom, B.H.1    Rutzky, L.P.2    Jakstys, M.M.3    Oyasu, R.4    Kaye, C.I.5    Kalhan, B.D.6
  • 28
    • 24744440099 scopus 로고    scopus 로고
    • Reanalysis of the protocol for in vitro synchronization of mammalian astrocytic cultures by serum deprivation
    • Cooper S: Reanalysis of the protocol for in vitro synchronization of mammalian astrocytic cultures by serum deprivation. Brain Res Protocols 15: 115-118, 2005.
    • (2005) Brain Res Protocols , vol.15 , pp. 115-118
    • Cooper, S.1
  • 29
    • 0034983262 scopus 로고    scopus 로고
    • Biological methods for cell-cell synchronization of mammalian cells
    • Davis PK, Ho A and Dowdy SF: Biological methods for cell-cell synchronization of mammalian cells. BioTechniques 30: 1322-1331, 2001.
    • (2001) BioTechniques , vol.30 , pp. 1322-1331
    • Davis, P.K.1    Ho, A.2    Dowdy, S.F.3
  • 30
    • 0034434222 scopus 로고    scopus 로고
    • Cell cycle arrest and differential gene expression in HT-29 cells exposed to an aqueous garlic extract
    • Frantz DJ, Hughes BG, Nelson DR, Murray BK and Christensen MJ: Cell cycle arrest and differential gene expression in HT-29 cells exposed to an aqueous garlic extract. Nutr Cancer 38: 255-264, 2000.
    • (2000) Nutr Cancer , vol.38 , pp. 255-264
    • Frantz, D.J.1    Hughes, B.G.2    Nelson, D.R.3    Murray, B.K.4    Christensen, M.J.5
  • 31
    • 0030071624 scopus 로고    scopus 로고
    • General concepts about cell sorting techniques
    • DOI 10.1016/0009-9120(95)02017-9
    • Orfao A and Ruiz-Argüelles A: General concepts about cell sorting techniques. Clin Biochem 29: 5-9, 1996. (Pubitemid 26073092)
    • (1996) Clinical Biochemistry , vol.29 , Issue.1 , pp. 5-9
    • Orfao, A.1    Ruiz-Arguelles, A.2
  • 32
    • 0030971289 scopus 로고    scopus 로고
    • Translocation of a UV-damaged DNA binding protein into a tight association with chromatin after treatment of mammalian cells with UV light
    • Ortin VR, McLenigan M, Takao M, Levine AS and Miroslava P: Translocation of a UV-damaged DNA binding protein into a tight association with chromatin after treatment of mammalian cells with UV light. J Cell Science 110: 1159-1168, 1997.
    • (1997) J Cell Science , vol.110 , pp. 1159-1168
    • Ortin, V.R.1    McLenigan, M.2    Takao, M.3    Levine, A.S.4    Miroslava, P.5
  • 33
    • 0017184389 scopus 로고
    • A rapid and sensitive method of the quantitation of microgram quantities of proteins utilizing principles of protein-dye binding
    • Bradford MM: A rapid and sensitive method of the quantitation of microgram quantities of proteins utilizing principles of protein-dye binding. Anal Biochem 72: 249-254, 1976.
    • (1976) Anal Biochem , vol.72 , pp. 249-254
    • Bradford, M.M.1
  • 34
    • 0024287626 scopus 로고
    • Mispair specificity of methyl-directed DNA mismatch correction in vitro
    • Su SS, Lahue RS, Au KG and Modrich P: Mispair specificity of methyl-directed DNA mismatch correction in vitro. J Biol Chem 263: 6829-6835, 1988.
    • (1988) J Biol Chem , vol.263 , pp. 6829-6835
    • Su, S.S.1    Lahue, R.S.2    Au, K.G.3    Modrich, P.4
  • 37
    • 33646237111 scopus 로고    scopus 로고
    • Optimizing the surface plasmon resonance/mass spectrometry interface for functional proteomics applications: How to avoid and utilize nonspecific adsorption
    • Larsericsdotter H, Jansson O, Zhukov A, Areskoug D, Oscarrson S and Buijs J: Optimizing the surface plasmon resonance/mass spectrometry interface for functional proteomics applications: How to avoid and utilize nonspecific adsorption. Proteomics 6: 2355-2364, 2006.
    • (2006) Proteomics , vol.6 , pp. 2355-2364
    • Larsericsdotter, H.1    Jansson, O.2    Zhukov, A.3    Areskoug, D.4    Oscarrson, S.5    Buijs, J.6
  • 38
    • 57349168191 scopus 로고    scopus 로고
    • Application of MALDI/SELDI mass spectrometry to cancer biomarker discovery and validation
    • Ahmed FE: Application of MALDI/SELDI mass spectrometry to cancer biomarker discovery and validation. Current Proteomics 5: 415-438, 2008.
    • (2008) Current Proteomics , vol.5 , pp. 415-438
    • Ahmed, F.E.1
  • 39
    • 77953451371 scopus 로고    scopus 로고
    • Liquid chromatography-mass spectrometry: A tool for proteome analysis & biomarker discovery and validation
    • Ahmed FE: Liquid chromatography-mass spectrometry: A tool for proteome analysis & biomarker discovery and validation. Exp Opin. Mol Diag 3: 429-444, 2009.
    • (2009) Exp Opin. Mol Diag , vol.3 , pp. 429-444
    • Ahmed, F.E.1
  • 40
    • 0034983262 scopus 로고    scopus 로고
    • Biological methods for cell-cell synchromization of mammalian cells
    • Davis PK, Ho A and Dowdy SF: Biological methods for cell-cell synchromization of mammalian cells. BioTechniques 30: 1322-1331, 2001.
    • (2001) BioTechniques , vol.30 , pp. 1322-1331
    • Davis, P.K.1    Ho, A.2    Dowdy, S.F.3
  • 41
    • 65749089057 scopus 로고    scopus 로고
    • Differences in mRNA and microRNA microarray expression profiles in human colon adenocarcinoma HT-29 cells treated with either intensity-modulated radiation therapy (IMRT), or conventional radiation therapy (RT)
    • Ahmed FE: Differences in mRNA and microRNA microarray expression profiles in human colon adenocarcinoma HT-29 cells treated with either intensity-modulated radiation therapy (IMRT), or conventional radiation therapy (RT). Cancer Genom Proteom 6: 109-128, 2009.
    • (2009) Cancer Genom Proteom , vol.6 , pp. 109-128
    • Ahmed, F.E.1
  • 42
    • 33746683073 scopus 로고    scopus 로고
    • Application of antibody array platforms
    • Haab B: Application of antibody array platforms. Curr Opin Biotechnol 17: 415-421, 2006.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 415-421
    • Haab, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.