Copper isotope fractionation during surface adsorption and intracellular incorporation by bacteria

Geochimica et Cosmochimica Acta

Volumn 75, Issue 3, 2011, Pages 784-799

  Navarrete, Jesica U ^a   Borrok, David M ^a   Viveros, Marian ^a   Ellzey, Joanne T ^a  

^a UNIVERSITY OF TEXAS AT EL PASO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADSORPTION; BACTERIUM; COMPLEXATION; COPPER; EXPERIMENTAL STUDY; GEOCHEMISTRY; GEOMICROBIOLOGY; ISOTOPIC FRACTIONATION; METABOLISM; MICROBIAL ACTIVITY; PH; REDUCTION; SEPARATION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FUNGI; NEGIBACTERIA; POSIBACTERIA;

EID: 78650931872     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2010.11.011     Document Type: Article

References (68)

1. Alakomi H.L., Saarela M., Helander I. Effect of EDTA on Salmonella enterica serovar Typhimurium involves a component not assignable to lipopolysaccharide release. Microbiology 2003, 149:2015-2021.
2. Archer C., Vance D. Mass discrimination correction in multiple-collector plasma source mass spectrometry: an example using Cu and Zn isotopes. J. Anal. At. Spectrom. 2004, 19:656-665.
3. Arnesano F., Banci L., Bertini I., Mangani S., Thompsett A.R. A redox switch in CopC: an intriguing copper trafficking protein that binds copper(I) and copper(II) at different sites. Proc. Nat. Acad. Sci. USA 2003, 100:3814-3819.
4. Asael D., Matthews A., Bar-Matthews M., Halicz L. Copper isotope fractionation in sedimentary copper mineralization (Timna Valley, Israel). Chem. Geol. 2007, 243:238-254.
5. Ashworth D.J., Alloway B.J. Complexation of copper by sewage sludge-derived dissolved organic matter: effects on soil sorption behavior and plant uptake. Water Air Soil Pollut. 2007, 187:187-196.
6. Balistrieri L.S., Borrok D.M., Wanty R.B., Ridley W.I. Fractionation of Cu and Zn isotopes during adsorption onto amorphous Fe(III) oxyhydroxide: experimental mixing of acid rock drainage and ambient river water. Geochim. Cosmochim. Acta 2008, 72:311-328.
7. Banci L., Bertini I., Mangani S. Integration of XAS and NMR techniques for the structure determination of metalloproteins. Examples from the study of copper transport proteins. J. Synchrotron Radiat. 2005, 12:94-97.
8. Barling J., Anbar A.D. Molybdenum isotope fractionation during adsorption by manganese oxides. Earth Planet. Sci. Lett. 2004, 217:315-329.
9. Bertini I., Cavallaro G., McGreevy K.S. Cellular copper management - a draft user's guide. Coord. Chem. Rev. 2010, 254:506-524.
10. Beveridge T.J. Role of cellular design in bacterial metal accumulation and mineralization. Rev. Microbiol. 1989, 43:147-171.
11. Beveridge T.J., Fyfe W.S. Metal fixation by bacterial cell walls. Can. J. Earth Sci. 1985, 22:1893-1898.
12. Beveridge T.J., Koval S.F. Binding of metals to cell envelopes of Escherichia coli K-12. Appl. Environ. Microbiol. 1981, 42:325-335.
13. Beveridge T.J., Murray R.G. Sites of metal deposition in the cell wall of Bacillus subtilis. J. Bacteriol. 1980, 141:876-887.
14. Bigalke M., Weyer S., Wilcke W. Copper isotope fractionation during complexation with insolubilized humic acid. Environ. Sci. Technol. 2010, 44:5496-5502.
15. Borrok D., Fein J.B. Distribution of protons and Cd between bacterial surfaces and dissolved humic substances determined through chemical equilibrium modeling. Geochim. Cosmochim. Acta 2004, 68:3043-3052.
16. Borrok D.M., Fein J.B. The impact of ionic strength on the adsorption of protons, Pb, Cd, and Sr onto the surfaces of Gram negative bacteria: testing non-electrostatic, diffuse and triple-later models. J. Colloid Interface Sci. 2005, 286:110-126.
17. Borrok D., Fein J.B., Tischler M., O'Loughlin E., Meyer H., Liss M., Kemner K. The effect of acidic solutions and growth conditions on the adsorptive properties of bacterial surfaces. Chem. Geol. 2004, 207:107-119.
18. Borrok D.M., Wanty R.B., Ridley W.I., Wolf R., Lamothe P.J., Adams M. Separation of copper, iron, and zinc from complex aqueous solutions for isotopic measurement. Chem. Geol. 2007, 242:400-414.
19. Boyanov M.I., Kelly S.D., Kemner K.M., Bunker B.A., Fein J.B., Fowle D.A. Adsorption of cadmium to Bacillus subtilis bacterial cell walls: a pH-dependent X-ray absorption fine structure spectroscopy study. Geochim. Cosmochim. Acta 2003, 67:3299-3311.
20. Brand L.E., Sunda W.G., Guillard R.L. Limitation of marine phytoplankton reproductive rates by zinc, manganese and iron. Limnol. Oceanogr. 1983, 28:1182-1198.
21. Buchl A., Hawkesworth C.J., Ragnarsdottir K.V., Brown D.R. Re-partitioning of Cu and Zn isotopes by modified protein expression. Geochem. Transact. 2008, 9:11. 10.1186/1467-4866-9-11.
22. Caroff M., Karibian D. Structure of bacterial lipopolysaccharides. Carbohydr. Res. 2003, 338:2431-2447.
23. Cheng K.J., Ingram J.M., Costerton J.W. Release of alkaline phosphatase from cells of Pseudomonas aeruginosa by manipulation of cation concentration and of pH. J. Bacteriol. 1970, 104:748-753.
24. Cobine P., Wickramasinghe W.A., Harrison M.D., Weber T., Solioz M., Dameron C.T. The Enterococcus hirae copper chaperone CopZ delivers copper(I) to the CopY repressor. FEBS Lett. 1999, 445:27-30.
25. Dube A., Zbytniewski R., Kowalkowski T., Cukrowska E., Buszewski B. Adsorption and migration of heavy metals in soil. Pol. J. Environ. Stud. 2001, 10:1-10.
26. Ehrlich S., Butler I., Halicz L., Richard D., Oldroyd A., Matthews A. Experimental study of the copper isotope fractionation between aqueous Cu(II) and covellite, CuS. Chem. Geol. 2004, 209:259-269.
27. Fein J.B., Daughney C.J., Yee N., Davis T.A. A chemical equilibrium model for metal adsorption onto bacterial surfaces. Geochim. Cosmochim. Acta 1997, 61:3319-3328.
28. Fernandez A., Borrok D.M. Fractionation of Cu, Fe, and Zn isotopes during the oxidative weathering of sulfide-rich rocks. Chem. Geol. 2009, 264:1-12.
29. Finney L.A., O'Halloran T.V. Transition metal speciation in the cell: insights from the chemistry of metal ion receptors. Science 2003, 300:931-936.
30. Gauthier T.D., Seitz W.R., Grant C.L. Effects of structural and compositional variations of dissolved humic materials on pyrene Koc values. Environ. Sci. Technol. 1987, 21:243-248.
31. Ghosal S., Leighton T.J., Wheeler K.E., Hutcheon I.D., Weber P.K. Spatially resolved characterization of water and ion incorporation in Bacillus spores. Appl. Environ. Microbiol. 2010, 76:3275-3282.
32. Green T.A., Russell A.E., Roy S. The development of a stable citrate electrolyte for the electrodeposition of copper-nickel alloys. J. Electrochem. Soc. 1998, 145:875-881.
33. Gustafsson J. P. (2007) Visual MINTEQ, version 2.53. Available from: http://www.lwr.kth.se/English/OurSoftware/vminteq/index.htm.
34. Harrison M.D., Jones C.E., Solioz M., Dameron C.T. Intracellular copper routing: the role of copper chaperones. Trends Biol. Sci. 2000, 25:29-32.
35. Hersman L.E., Forsythe J.H., Ticknor L.O., Maurice P.A. Growth of Pseudomonas mendocina on Fe(III)(hydr)oxides. Appl. Environ. Microbiol. 2001, 67:4448-4453.
36. Ivanov S., Tsakova V. Influence of copper anion complexes on the incorporation of metal particles in polyaniline. Part I: copper citrate complex. J. Appl. Electrochem. 2002, 32:701-707.
37. Karlsson T., Persson P., Skyllberg U. Complexation of copper(II) in organic soils and in dissolved organic matter - EXAFS evidence for chelate ring structures. Environ. Sci. Technol. 2006, 40:2623-2628.
38. Kelly S.D., Kemner K.M., Fein J.B., Fowle D.A., Boyanov M.I., Bunker B.A., Yee N. X-ray absorption fine structure determination of pH-dependent U-bacterial cell wall interactions. Geochim. Cosmochim. Acta 2002, 66(2):3855-3871.
39. Kimball B.E., Mathur R., Dohnalkova A.C., Wall A.J., Runkel R.L., Brantley S.L. Copper isotope fractionation in acid mine drainage. Geochim. Cosmochim. Acta 2009, 73:1247-1263.
40. Koch K.A., Marjorette M., Peña M.M.O., Thiele D.J. Copper-binding motifs in catalysis, transport, detoxification and signaling. Chem. Biol. 1997, 4:549-560.
41. Kolodziej B., Slepecky R.A. Trace metal requirements for sporulation of Bacillus megaterium. J. Bacteriol. 1964, 88:821-830.
42. Korshin G.V., Frenkel A.I., Stern E.A. ESAFS study of the inner shell structure in copper(II) complexes with humic substances. Environ. Sci. Technol. 1998, 32:2699-2705.
43. Kretschmer X.C., Meitzner G., Gardea-Torresday J.L., Webb R. Determination of Cu environments in the cyanobacterium Anabaena flos-aquae by X-ray absorption spectroscopy. Appl. Environ. Microbiol. 2004, 70:771-780.
44. Kudeyarova A.Y. Application of basic chemical concepts to understanding the formation and transformation mechanisms of humic substances: a revue of publication and own experimental data. Soil Chem. 2007, 40:934-948.
45. Larson P.B., Maher K., Ramos F.C., Chang Z., Gaspar M., Meinert L.D. Copper isotope ratios in magmatic and hydrothermal ore-forming environments. Chem. Geol. 2003, 201:337-350.
46. Ma H., Kim S.D., Cha D.K., Allen H.E. Effect of kinetics of complexation by humic acid on toxicity of copper to Ceriodaphnia dubia. Environ. Toxicol. Chem. 1999, 18:28-837.
47. Markl G., Lahaye Y., Schwinn G. Copper isotopes as monitors of redox processes in hydrothermal mineralization. Geochim. Cosmochim. Acta 2006, 70:4215-4228.
48. Mathur R., Ruiz J., Titley S., Liermann L., Buss H., Brantley S. Cu isotopic fractionation in the supergene environment with and without bacteria. Geochim. Cosmochim. Acta 2005, 69:5233-5246.
49. Mathur R., Titley S., Barra F., Brantley S., Wilson M., Phillips A., Munizaga F., Maksaev V., Vervoort J., Hart G. Exploration potential of Cu isotope fractionation in porphyry copper deposits. J. Geochem. Explor. 2009, 102:1-6.
50. Mattatall N.R., Jazairi J., Hill B.C. Characterization of YpmQ, an accessory protein required for the expression of cytochrome c oxidase in Bacillus subtilis. J. Biol. Chem. 2000, 275:28802.
51. Meador J.P. The interaction of pH, dissolved organic carbon, and total copper in the determination of ionic copper and toxicity. Aquat. Toxicol. 1991, 19:13.
52. Nikaido H., Vaara M. Molecular basis of bacterial outer membrane permeability. Microbiol. Rev. 1985, 49:1-32.
53. Nybroe O., Brandt K.K., Ibrahim Y.M., Tom-Petersent A., Holm P.E. Differential bioavailability of copper complexes to bioluminescent Pseudomonas fluorescens reporter strains. Environ. Toxicol. Chem. 2008, 27:2246-2252.
54. Pécou E., Maass A., Remenik D., Briche J., Gonzalez M. A mathematical model for copper homeostasis in Enterococcus hirae. Math. Biosci. 2006, 203:222-239.
55. Peña M.M.O., Lee J., Thiele D.J. A delicate balance: homeostatic control of copper uptake and distribution. J. Nutr. 1999, 129:1251-1260.
56. Pokrovsky O.S., Viers J., Enmova E.E., Kompantseva E.I., Freydier R. Copper isotope fractionation during its interaction with soil and aquatic microorganisms and metal oxy(hydr)oxides: possible structural control. Geochim. Cosmochim. Acta 2008, 72:1742-1757.
57. Pribil M.J., Wanty R.B., Ridley W.I., Borrok D.M. Influence of sulfur-bearing polyatomic species on high precision measurements of Cu isotopic composition. Chem. Geol. 2010, 272:49-54.
58. Rensing C., Grass G. Escherichia coli mechanisms of copper homeostasis in a changing environment. Microbiol. Rev. 2003, 27:197-213.
59. Rouch D., Camakaris J., Lee B.T.O., Luke R.K.J. Inducible plasmid-mediated copper resistance in Escherichia coli. J. Bacteriol. 1985, 154:1263-1268.
60. Smaldone G.T., Helmann J.D. CsoR regulates the copper efflux operon copZA in Bacillus subtilis. Microbiology 2007, 153:4123-4128.
61. Smith R.M., Martell A.E. Critical Stability Constants. V. 1 1978, Plenum Press, New York and London.
62. Solioz M. Role of proteolysis in copper homoeostasis. Biochem. Soc. Trans. 2002, 4:688-691.
63. Teplyakov A., Obmolova G., Toedt J., Galperin M.Y., Gilliland G.L. Crystal structure of the bacterial YhcH protein indicates a role in sialic acid catabolism. Am. Soc. Microbiol. 2005, 187:5520-5527.
64. Vance D., Archer C., Bermin J., Perkins J., Statham P.J., Lohan M.C., Ellwood M.J., Mills R.A. The copper isotope geochemistry of rivers and the oceans. Earth Plant. Sci. Lett. 2008, 274:204-213.
65. Waldron K.J., Robinson N.J. How do bacterial cells ensure that metalloproteins get the correct metal?. Nat. Rev. Microbiol. 2009, 7:25-35.
66. Wasylenki L.E., Anbar A.D., Liermann L.J., Mathur R., Gordon G.W., Brantley S.L. Isotope fractionation during microbial metal uptake measured by MC-ICP-MS. J. Anal. At. Spectrom. 2007, 22:905-910.
67. Wilkinson S.G. The sensitivity of Pseudomonads to ethylenediaminetetra-acetic acid. J. Gen. Microbiol. 1967, 47:67-76.
68. Zhu X.K., Guo Y., Williams R.J.P., O'Nions R.K., Matthews A., Belshaw N.S., Canters G.W., de Waal E.C., Weser Ul., Burgess B.K., Salvato B. Mass fractionation processes of transition metal isotopes. Earth Plant. Sci. Lett. 2002, 200:47-62.