-
1
-
-
40749134214
-
A segmental maximum a posteriori approach to genome-wide copy number profiling
-
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., de Ståhl, T. D., Dumanski, J. P. and Komorowski, J. (2008) A segmental maximum a posteriori approach to genome-wide copy number profiling. Bioinformatics, 24, 751-758.
-
(2008)
Bioinformatics
, vol.24
, pp. 751-758
-
-
Andersson, R.1
Bruder, C.E.G.2
Piotrowski, A.3
Menzel, U.4
Nord, H.5
Sandgren, J.6
Hvidsten, T.R.7
de Ståhl, T.D.8
Dumanski, J.P.9
Komorowski, J.10
-
2
-
-
0000708831
-
Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
-
Antoniak, C. E. (1974) Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems. Ann. Statist., 2, 1152-1174.
-
(1974)
Ann. Statist.
, vol.2
, pp. 1152-1174
-
-
Antoniak, C.E.1
-
3
-
-
0000342467
-
Statistical inference for probabilistic functions of finite state space Markov chains
-
Baum, L. E. (1966) Statistical inference for probabilistic functions of finite state space Markov chains. Ann. Math. Statist., 37, 1554-1563.
-
(1966)
Ann. Math. Statist.
, vol.37
, pp. 1554-1563
-
-
Baum, L.E.1
-
4
-
-
42449115721
-
wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data
-
article
-
Cahan, P., Godfrey, L. E., Eis, P. S., Richmond, T. A., Selzer, R. R., Brent, M., McLeod, H. L., Ley, T. J. and Graubert, T. A. (2008) wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data. Nucleic Acids Res., 36, article e41.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Cahan, P.1
Godfrey, L.E.2
Eis, P.S.3
Richmond, T.A.4
Selzer, R.R.5
Brent, M.6
McLeod, H.L.7
Ley, T.J.8
Graubert, T.A.9
-
5
-
-
13844251687
-
Inference in Hidden Markov Models
-
New York: Springer.
-
Cappé, O., Moulines, E. and Rydén, T. (2005) Inference in Hidden Markov Models. New York: Springer.
-
(2005)
-
-
Cappé, O.1
Moulines, E.2
Rydén, T.3
-
6
-
-
34247877877
-
QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data
-
Colella, S., Yau, C., Taylor, J. M., Mirza, G., Butler, H., Clouston, P., Bassett, A. S., Seller, A., Holmes, C. C. and Ragoussis, J. (2007) QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res., 35, 2013-2025.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2013-2025
-
-
Colella, S.1
Yau, C.2
Taylor, J.M.3
Mirza, G.4
Butler, H.5
Clouston, P.6
Bassett, A.S.7
Seller, A.8
Holmes, C.C.9
Ragoussis, J.10
-
7
-
-
0003391450
-
Non-uniform Random Variate Generation
-
New York: Springer.
-
Devroye, L. (1986) Non-uniform Random Variate Generation. New York: Springer.
-
(1986)
-
-
Devroye, L.1
-
8
-
-
78650906815
-
Multivariate kernel partition process mixtures
-
to be published.
-
Dunson, D. (2009) Multivariate kernel partition process mixtures. Statist. Sin., to be published.
-
(2009)
Statist. Sin.
-
-
Dunson, D.1
-
10
-
-
84950937290
-
Bayesian density estimation and inference using mixtures
-
Escobar, M. D. and West, M. (1995) Bayesian density estimation and inference using mixtures. J. Am. Statist. Ass., 90, 577-588.
-
(1995)
J. Am. Statist. Ass.
, vol.90
, pp. 577-588
-
-
Escobar, M.D.1
West, M.2
-
11
-
-
78650919492
-
-
The sticky HDP-HMM: Bayesian nonparametric hidden markov models with persistent states. (Available from.)
-
Fox, E., Sudderth, E., Jordan, M. and Willsky, A. (2009) The sticky HDP-HMM: Bayesian nonparametric hidden markov models with persistent states. (Available from.)
-
(2009)
-
-
Fox, E.1
Sudderth, E.2
Jordan, M.3
Willsky, A.4
-
12
-
-
68149166290
-
Decoding the pattern of photon colors in single-molecule FRET
-
Gopich, I. V. and Szabo, A. (2009) Decoding the pattern of photon colors in single-molecule FRET. J. Phys. Chem. B, 113, 10965-10973.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 10965-10973
-
-
Gopich, I.V.1
Szabo, A.2
-
13
-
-
0035531242
-
Modelling heterogeneity with and without the Dirichlet process
-
Green, P. and Richardson, S. (2001) Modelling heterogeneity with and without the Dirichlet process. Scand. J. Statist., 28, 355-375.
-
(2001)
Scand. J. Statist.
, vol.28
, pp. 355-375
-
-
Green, P.1
Richardson, S.2
-
14
-
-
49549095772
-
Bayesian hidden Markov modeling of array CGH data
-
Guha, S., Li, Y. and Neuberg, D. (2008) Bayesian hidden Markov modeling of array CGH data. J. Am. Statist. Ass., 103, 485-497.
-
(2008)
J. Am. Statist. Ass.
, vol.103
, pp. 485-497
-
-
Guha, S.1
Li, Y.2
Neuberg, D.3
-
15
-
-
0001342006
-
A new approach to the economic analysis of nonstationary time series and the business cycle
-
Hamilton, J. D. (1989) A new approach to the economic analysis of nonstationary time series and the business cycle. Econometrica, 57, 357-384.
-
(1989)
Econometrica
, vol.57
, pp. 357-384
-
-
Hamilton, J.D.1
-
16
-
-
84924603283
-
Bayesian Nonparametrics: Principles and Practice
-
eds) Cambridge: Cambridge University Press.
-
Hjort, N., Holmes, C., Müller, P. and Walker, S. (eds) (2010) Bayesian Nonparametrics: Principles and Practice. Cambridge: Cambridge University Press.
-
(2010)
-
-
Hjort, N.1
Holmes, C.2
Müller, P.3
Walker, S.4
-
17
-
-
55149108337
-
Likelihood-based estimation of multidimensional Langevin models and its application to biomolecular dynamics
-
Horenko, I. and Schütte, C. (2008) Likelihood-based estimation of multidimensional Langevin models and its application to biomolecular dynamics. Multiscale Modlng Simuln, 7, 731-773.
-
(2008)
Multiscale Modlng Simuln
, vol.7
, pp. 731-773
-
-
Horenko, I.1
Schütte, C.2
-
18
-
-
34247181241
-
Exploiting noise in array CGH data to improve detection of DNA copy number change
-
article
-
Hu, J., Gao, J.-B., Cao, Y., Bottinger, E. and Zhang, W. (2007) Exploiting noise in array CGH data to improve detection of DNA copy number change. Nucleic Acids Res., 35, article e35.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Hu, J.1
Gao, J.2
Cao, Y.3
Bottinger, E.4
Zhang, W.5
-
19
-
-
1842816362
-
Gibbs sampling methods for stick-breaking priors
-
Ishwaran, H. and James, L. (2001) Gibbs sampling methods for stick-breaking priors. J. Am. Statist. Ass., 96, 161-173.
-
(2001)
J. Am. Statist. Ass.
, vol.96
, pp. 161-173
-
-
Ishwaran, H.1
James, L.2
-
20
-
-
0002634803
-
Dynamic linear models with Markov-switching
-
Kim, C.-J. (1994) Dynamic linear models with Markov-switching. J. Econmetr., 60, 1-22.
-
(1994)
J. Econmetr.
, vol.60
, pp. 1-22
-
-
Kim, C.1
-
21
-
-
33746603906
-
Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens
-
Lakshmi, B., Hall, I. M., Egan, C., Alexander, J., Leotta, A., Healy, J., Zender, L., Spector, M. S., Xue, W., Lowe, S. W., Wigler, M. and Lucito, R. (2006) Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens. Proc. Natn. Acad. Sci. USA, 103, 11234-11239.
-
(2006)
Proc. Natn. Acad. Sci. USA
, vol.103
, pp. 11234-11239
-
-
Lakshmi, B.1
Hall, I.M.2
Egan, C.3
Alexander, J.4
Leotta, A.5
Healy, J.6
Zender, L.7
Spector, M.S.8
Xue, W.9
Lowe, S.W.10
Wigler, M.11
Lucito, R.12
-
22
-
-
0001876649
-
On a class of Bayesian nonparametric estimates: I, Density estimates
-
Lo, A. Y. (1984) On a class of Bayesian nonparametric estimates: I, Density estimates. Ann. Statist., 12, 351-357.
-
(1984)
Ann. Statist.
, vol.12
, pp. 351-357
-
-
Lo, A.Y.1
-
23
-
-
0003612818
-
Foundations of Statistical Natural Language Processing
-
Cambridge: MIT Press.
-
Manning, C. D. and Schuetze, H. (1999) Foundations of Statistical Natural Language Processing. Cambridge: MIT Press.
-
(1999)
-
-
Manning, C.D.1
Schuetze, H.2
-
24
-
-
33646163019
-
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
-
Marioni, J. C., Thorne, N. P. and Tavaré, S. (2006) BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. Bioinformatics, 22, 1144-1146.
-
(2006)
Bioinformatics
, vol.22
, pp. 1144-1146
-
-
Marioni, J.C.1
Thorne, N.P.2
Tavaré, S.3
-
25
-
-
33746747438
-
Analysis of single-molecule FRET trajectories using hidden Markov modeling
-
McKinney, S. A., Joo, C. and Ha, T. (2006) Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophys. J., 91, 1941-1951.
-
(2006)
Biophys. J.
, vol.91
, pp. 1941-1951
-
-
McKinney, S.A.1
Joo, C.2
Ha, T.3
-
26
-
-
0032091593
-
Approximating distributions of random functionals of Ferguson-Dirichlet priors
-
Muliere, P. and Tardella, L. (1998) Approximating distributions of random functionals of Ferguson-Dirichlet priors. Can. J. Statist., 26, 283-297.
-
(1998)
Can. J. Statist.
, vol.26
, pp. 283-297
-
-
Muliere, P.1
Tardella, L.2
-
27
-
-
77950032550
-
Markov chain sampling: methods for Dirichlet process mixture models
-
Neal, R. (2000) Markov chain sampling: methods for Dirichlet process mixture models. J. Computnl Graph. Statist., 9, 283-297.
-
(2000)
J. Computnl Graph. Statist.
, vol.9
, pp. 283-297
-
-
Neal, R.1
-
28
-
-
78650890884
-
Technical Report
-
Centre for Research in Statistical Methodology, University of Warwick, Coventry. (Available from.)
-
Papaspiliopoulos, O. (2008) A note on posterior sampling from Dirichlet mixture models. Technical Report. Centre for Research in Statistical Methodology, University of Warwick, Coventry. (Available from.)
-
(2008)
A note on posterior sampling from Dirichlet mixture models
-
-
Papaspiliopoulos, O.1
-
29
-
-
40249114903
-
Retrospective Markov chain Monte Carlo for Dirichlet process hierarchical models
-
Papaspiliopoulos, O. and Roberts, G. O. (2008) Retrospective Markov chain Monte Carlo for Dirichlet process hierarchical models. Biometrika, 95, 169-186.
-
(2008)
Biometrika
, vol.95
, pp. 169-186
-
-
Papaspiliopoulos, O.1
Roberts, G.O.2
-
31
-
-
0024610919
-
A tutorial on HMM and selected applications in speech recognition
-
Rabiner, L. (1989) A tutorial on HMM and selected applications in speech recognition. Proc. IEEE, 77, 257-286.
-
(1989)
Proc. IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.1
-
32
-
-
0036489069
-
Bayesian methods for hidden Markov models: recursive computing in the 21st century
-
Scott, S. (2002) Bayesian methods for hidden Markov models: recursive computing in the 21st century. J. Am. Statist. Ass., 97, 337-351.
-
(2002)
J. Am. Statist. Ass.
, vol.97
, pp. 337-351
-
-
Scott, S.1
-
33
-
-
33747890138
-
Integrating copy number polymorphisms into array CGH analysis using a robust HMM
-
Shah, S. P., Xuan, X., DeLeeuw, R. J., Khojasteh, M., Lam, W. L., Ng, R. and Murphy, K. P. (2006) Integrating copy number polymorphisms into array CGH analysis using a robust HMM. Bioinformatics, 22, e431-e439.
-
(2006)
Bioinformatics
, vol.22
-
-
Shah, S.P.1
Xuan, X.2
DeLeeuw, R.J.3
Khojasteh, M.4
Lam, W.L.5
Ng, R.6
Murphy, K.P.7
-
34
-
-
34249681894
-
Continuous-index hidden Markov modelling of array CGH copy number data
-
Stjernqvist, S., Rydén, T., Sköld, M. and Staaf, J. (2007) Continuous-index hidden Markov modelling of array CGH copy number data. Bioinformatics, 23, 1006-1014.
-
(2007)
Bioinformatics
, vol.23
, pp. 1006-1014
-
-
Stjernqvist, S.1
Rydén, T.2
Sköld, M.3
Staaf, J.4
-
35
-
-
33749249312
-
Hierarchical Dirichlet processes
-
Teh, Y. W., Jordan, M. I., Beal, M. J. and Blei, D. M. (2006) Hierarchical Dirichlet processes. J. Am. Statist. Ass., 101, 1566-1581.
-
(2006)
J. Am. Statist. Ass.
, vol.101
, pp. 1566-1581
-
-
Teh, Y.W.1
Jordan, M.I.2
Beal, M.J.3
Blei, D.M.4
-
36
-
-
56449130659
-
ICML '08: Proc. 25th Int. Conf. Machine Learning
-
New York:Association for Computing Machinery.
-
Van Gael, J., Saatci, Y., Teh, Y. W. and Ghahramani, Z. (2008) Beam sampling for the infinite hidden Markov model. In ICML '08: Proc. 25th Int. Conf. Machine Learning, pp. 1088-1095. New York:Association for Computing Machinery.
-
(2008)
Beam sampling for the infinite hidden Markov model
, pp. 1088-1095
-
-
Van Gael, J.1
Saatci, Y.2
Teh, Y.W.3
Ghahramani, Z.4
-
37
-
-
33847707418
-
Sampling the Dirichlet mixture model with slices
-
Walker, S. (2007) Sampling the Dirichlet mixture model with slices. Communs Statist. Simuln Computn, 36, 45-54.
-
(2007)
Communs Statist. Simuln Computn
, vol.36
, pp. 45-54
-
-
Walker, S.1
|