Revised classification of former genus Phoxinellus using nuclear DNA sequences

Biochemical Systematics and Ecology

Volumn 38, Issue 5, 2010, Pages 1069-1073

  Palandačić, Anja ^a   Zupančič, Primož ^b   Snoj, Aleš ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

^b AZV Agency   (Slovenia)

Author keywords

Balkan Peninsula; Delminichthys; Early growth response 2b; ITS1; Molecular phylogeny; Rhodopsin

Indexed keywords

CLADISTICS; CYPRINID; GENETIC ANALYSIS; GROWTH RESPONSE; PIGMENT; STATISTICAL APPLICATION; TAXONOMY;

BALKANS;

FONTINALIS; PHOXINELLUS; PHOXINELLUS PSEUDALEPIDOTUS; TELESTES;

EID: 78650897845     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2010.09.021     Document Type: Article

References (25)

1. Avise J.C. Molecular Markers, Natural History and Evolution 1994, Chapman and Hall, New York.
2. Bernatchez L., Glemet H., Wilson C.C., Danzmann R.G. Introgression and fixation of Arctic char (Salvelinus alpinus) mitochondrial genome in an allopatric population of brook trout (Salvelinus fontinalis). Can. J. Fish. Aquat. Sci. 1995, 52:179-185.
3. Bogutskaya N.G., Zupančič P. Phoxinellus pseudalepidotus (Telostei: Cyprinidae), a new species from the Neretva basin with an overview of the morphology of Phoxinellus species of Croatia and Bosnia-Herzegovina. Ichthyol. Explor. Freshw 2003, 14:359-383.
4. Booton G.C., Kaufman L., Chandler M., Oguto-Ohwayo R., Duan W., Fuerst P.A. Evolution of the ribosomal RNA Internal transcribed spacer one (ITS-1) in cichlid fishes of the lake Victoria region. Mol. Phylogenet. Evol. 1999, 11(2):273-282.
5. Chen W.-J., Miya M., Saitoh K., Mayden R.L. Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing tree of life of ray-finned fishes: the order Cypriniformes (Ostariophysi) as a case study. Gene 2008, 423:125-134.
6. Chow S., Nakagawa T., Suzukis N., Takeyama H., Matsunaga T. Phylogenetic relationships among Thunnus species inferred from rDNA ITS1 sequence. J. Fish Biol. 2006, 68(A):24-35.
7. Coleman A.W., Vacquier V.D. Exploring the phylogenetic utility of ITS sequences for animals: a test case for abalone (Haliotis). J. Mol. Evol. 2002, 54:246-257.
8. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
9. Freyhof J., Lieckfeldt D., Bogutskaya N.G., Pitra C., Ludwig A. Phylogenetic position of the Dalmatian genus Phoxinellus and description of the newly proposed genus Delminichthys (Teleosti: Cyprinidae). Mol. Phylogenet. Evol. 2006, 38:416-425.
10. Hamilton P.B., Tyler C.R. Identification of microsatellite loci for parentage analysis in roach Rutilus rutilus and eight other cyprinid fish by cross-species amplification, and a novel test for detecting hybrids between roach and other cyprinids. Mol. Ecol. Notes 2007, 8:462-465.
11. Ketmaier V., Bianco P.G., Cobolli M., Krivokapic M., Caniglia R., De Matthaeis E. Molecular phylogeny of two lineages of Leuciscinae cyprinids (Telestes and Scardinius) from the peri-Mediterranean area based on cytochrome b data. Mol. Phylogenet. Evol. 2004, 32:1061-1071.
12. Lieckfeldt D., Hett A.K., Ludwig A., Freyhof J. Detection, characterization and utility of a new highly variable noncoding nuclear region in several species of cyprinid fishes (Cyprinidae). Eur. J. Wildl. Res. 2006, 52(1):63-65.
13. Ludwig A., Congiu L., Pitra C., Fickel J., Gessner J., Fontana F., Patarnello T., Zane L. Nonconcordant evolutionary history of maternal and paternal lineages in Adriatic sturgeon. Mol. Ecol. 2003, 12:3253-3264.
14. Marchetto F., Zaccara S., Muenzel F.M., Salzburger W. Phylogeography of the Italian vairone (Telestes muticellus, Bonaparte 1837) inferred by microsatellite markers: evolutionary history of a freshwater fish species with a restricted and fragmented distribution. Evol. Biol. 2010, 10:111-122.
15. Miller S.A., Dykes D.D., Polesky H.F. A simple salting out procedure from human nucleated cells. Nucleic Acids Res. 1988, 16:1215.
16. Palumbi S.R., Baker C.S. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whale. Mol. Biol. Evol. 1994, 11:426-435.
17. Pleyte K.A., Duncan S.D., Phillips R.B. Evolutionary relationships of the Salmonid fish genus Salvelinus inferred from DNA sequences of the first internal transcribed spacer (ITS1) of ribosomal DNA. Mol. Phylogenet. Evol. 1992, 1:223-230.
18. Posada, D., 2008. jModelTest 0.1 Package. Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain.
19. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
20. Manolo Gouy Laboratoire de Biometrie et Biologie Evolutive CNRS/Universite Lyon I Seaview, Version 4.2.3. http://pbil.univ-lyon1.fr/software/seaview.html.
21. Sušnik S., Weiss S., Odak T., Delling B., Treer T., Snoj A. Reticulate evolution: ancient introgression of the Adriatic brown trout mtDNA in softmouth trout Salmo obtusirostris (Teleostei: Salmonide). Biol. J. Linn. Soc. 2007, 90:139-152.
22. Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference http://ceb.csit.fsu.edu/awty.
23. Wyatt P.M.W., Pitts C.S., Butlin R.K. A molecular approach to detect hybridization between bream Abramis brama, roach Rutilus rutilus and rudd Scardinius erythrophthalmus. J. Fish Biol. 2006, 69:52-71.
24. Zupančič P., Bogutskaya N.G. Description of a new species, Phoxinellus dalmaticus (Cyprinidae: leuciscinae), from the Čikola River in the Krka River system, Adriatic basin (Croatia). Nat. Croat. 2000, 9:67-81.
25. Zwickl, D.J., 2006. GARLI: Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD dissertation, The University of Texas at Austin. , version 1.0 and GARLI-PART Version 0.97 https://www.nescent.org/wg_garli/Partition_testing_version.