Developmental Validation of Feline, Bovine, Equine, and Cervid Quantitative PCR Assays

Journal of Forensic Sciences

Volumn 56, Issue SUPPL. 1, 2011, Pages

  Lindquist, Christina D ^a   Evans, Jeffery J ^a   Wictum, Elizabeth J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bovine; Cat; Cervid; Cow; Deer; DNA quantification; Equine; Feline; Forensic science; Horse; IPC; MC1R; Quantitative PCR; Real time PCR

Indexed keywords

MELANOCORTIN 1 RECEPTOR; PRIMER DNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CAT; CATTLE; DEER; DNA FINGERPRINTING; DOG; GENETICS; GENOTYPE; HORSE; OLIGONUCLEOTIDE PROBE; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SPECIES DIFFERENCE; STANDARD; TANDEM REPEAT; VALIDATION STUDY;

ANIMALS; CATS; CATTLE; DEER; DNA FINGERPRINTING; DNA PRIMERS; DOGS; GENOTYPE; HORSES; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; RECEPTOR, MELANOCORTIN, TYPE 1; REPRODUCIBILITY OF RESULTS; SPECIES SPECIFICITY; TANDEM REPEAT SEQUENCES;

EID: 78650723776     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2010.01605.x     Document Type: Article

References (30)

1. Waye JS, Presley LA, Budowle B, Shutler GG, Fourne RM. A simple and sensitive method for quantifying human genomic DNA in forensic specimen extracts. BioTechniques 1989;7(8):852-5.
2. Recommendations of the DNA Commission of the International Society for Forensic Haemogenetics relating to the use of PCR-based polymorphisms. Forensic Sci Int 1992;55(1):1-3.
3. Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, et al. Validation of a 16-locus fluorescent multiplex system. J Forensic Sci 2002;47(4):773-85.
4. Moretti TR, Baumstark AL, Defenbaugh DA, Keys KM, Brown AL, Budowle B. Validation of STR typing by capillary electrophoresis. J Forensic Sci 2001;46(3):661-76.
5. LaFountain MJ, Schwartz MB, Svete PA, Walkinshaw MA, Buel E. TWGDAM validation of the AmpFlSTR Profiler Plus and AmpFlSTR COfiler STR multiplex systems using capillary electrophoresis. J Forensic Sci 2001;46(5):1191-8.
6. Butler JM. Forensic DNA typing: biology and technology behind STR markers. London, UK: Academic Press, 2001.
7. Nicklas JA, Buel E. Quantification of DNA in forensic samples. Anal Bioanal Chem 2003;376(8):1160-7.
8. Gill P, Sparkes R, Fereday L, Werrett DJ. Report of the European Network of Forensic Science Institutes (ENSFI): formulation and testing of principles to evaluate STR multiplexes. Forensic Sci Int 2000;108(1):1-29.
9. Nicklas JA, Buel E. Development of an Alu-based, QSY7-labeled primer PCR method for quantitation of human DNA in forensic samples. J Forensic Sci 2003;48(2):282-91.
10. American Society of Crime Laboratory Directors/Laboratory Accreditation Board (ASCLD/LAB). FBI DNA quality assurance audit document, (accessed December 21, 2009).
11. DNA Advisory Board. Quality assurance standards for forensic DNA testing laboratories and for convicted offender DNA databasing laboratories. Forensic Sci Comm 2000;2(3), (accessed December 21, 2009).
12. Richard ML, Frappier RH, Newman JC. Developmental validation of a real-time quantitative PCR assay for automated quantification of human DNA. J Forensic Sci 2003;48(5):1041-6.
13. Alonso A, Martin P, Albarran C, Garcia P, Garcia O, de Simon LF, et al. Real-time PCR designs to estimate nuclear and mitochondrial DNA copy number in forensic and ancient DNA studies. Forensic Sci Int 2004;3:141-9.
14. Walker JA, Hedges DJ, Perodeau BP, Landry KE, Stoilova N, Laborde ME, et al. Multiplex polymerase chain reaction for simultaneous quantification of human nuclear, mitochondrial, and male Y-chromosome DNA: application in human identification. Anal Biochem 2005;337(1):89-97.
15. Menotti-Raymond M, David V, Wachter L, Yuhki N, O'Brien SJ. Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens. Croat Med J 2003;44(3):327-31.
16. Walker JA, Hughes DA, Anders BA, Shewale J, Sinha SK, Batzer MA. Quantitative intra-short interspersed element PCR for species-specific DNA identification. Anal Biochem 2003;316(2):259-69.
17. Evans JJ, Wictum EJ, Penedo MC, Kanthaswamy S. Real-time polymerase chain reaction quantification of canine DNA. J Forensic Sci 2007;52(1):93-6.
18. Livak KJ, Flood SJ, Marmaro J, Guisti W, Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl 1995;4(6):357-62.
19. Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res 1996;6(10):986-94.
20. Eizirik E, Yuhki N, Johnson WE, Menotti-Raymond M, Hannah SS, O'Brien SJ. Molecular genetics and evolution of melanism in the cat family. Curr Biol 2003;13(5):448-53.
21. Marklund L, Moller MJ, Sandberg K, Andersson L. A missense mutation in the gene for melanocyte-stimulating hormone receptor (MC1R) is associated with the chestnut coat color in horses. Mamm Genome 1996;7(12):895-9.
22. Rouzaud F, Martin J, Gallet PF, Delourme D, Goulemot-Leger V, Amigues Y, et al. A first genotyping assay of French cattle breeds based on a new allele of the extension gene encoding the melanocortin-1 receptor (Mc1r). Genet Sel Evol 2000;32(5):511-20.
23. Hartman LJ, Coyne SR, Norwood DA. Development of a novel internal positive control for Taqman based assays. Mol Cell Probes 2005;19(1):51-9.
24. Swango KL, Timken MD, Chong MD, Buoncristiani MR. A quantitative PCR assay for the assessment of DNA degradation in forensic samples. Forensic Sci Int 2006;158(1):14-26.
25. Revised Validation Guidelines, Scientific Working Group on DNA Analysis Methods (SWGDAM). Forensic Sci Comm 2004;6(3), (accessed December 21, 2009).
26. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank. Nucleic Acids Res 2008;36:D25-30.
27. Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1989.
28. Moore D, Dowhan D. Purification and concentration of DNA from aqueous solutions. Curr Protoc Mol Biol 2002;Chapter 2:Unit 2.1A.
29. Swango KL, Hudlow WR, Timken MD, Buoncristiani MR. Developmental validation of a multiplex qPCR assay for assessing the quantity and quality of nuclear DNA in forensic samples. Forensic Sci Int 2007;170(1):35-45.
30. Kuznetsova MV, Kholodova MV, Danilkin AA. Molecular phylogeny of deer (Cervidae: Artiodactyla). Genetika 2005;41(7):910-8.