BioIDMapper: A cross-referencing and managing platform for biological IDs in R

Proceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010

Volumn 6, Issue , 2010, Pages 2449-2451

  Sun, Xiaoyong ^a   Lawrence, Michael ^b   Liu, Zhaoquan ^c   Sun, Zhongxu ^d  

^a Iowa State University   (United States)

^b GENENTECH INC   (United States)

^c Zibo Institute of Drug Control   (China)

^d SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DATA RESOURCES; EXTERNAL RESOURCES; FUNCTIONAL LEVELS; GENE ONTOLOGY; UNIPROT;

BIOMEDICAL ENGINEERING; DATABASE SYSTEMS; INFORMATION SCIENCE; ONTOLOGY;

GENES;

EID: 78650645127     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BMEI.2010.5639785     Document Type: Conference Paper

References (7)

1. C. Ding and C. Cantor, "Quantitative analysis of nucleic acids - the last few years of progress," Journal of Biochemistry and Molecular Biology, vol. 37, no. 1, pp. 1-10, Jan 31 2004.
2. J. Yates, A. Gilchrist, K. Howell, and J. Bergeron, "Proteomics of organelles and large cellular structures," Nature Reviews Molecular Cell Biology, vol. 6, no. 9, pp. 702-714, Sep 2005.
3. C. Hack, "Integrated transcriptome and proteome data: the challenges ahead," Brief Funct Genomic Proteomic., vol. 3, no. 3, pp. 212-9, Nov 2004.
4. A. Alibes, P. Yankilevich, A. Canada, and R. Diaz-Uriarte, "IDconverter and IDClight: conversion and annotation of gene and protein IDs," BMC Bioinformatics, vol. 8, Jan 10 2007.
5. K. Bussey, D. Kane, M. Sunshine, S. Narasimhan, S. Nishizuka, W. Reinhold, B. Zeeberg, Ajay, and J. Weinstein, "MatchMiner: a tool for batch navigation among gene and gene product identifiers," Genome Biology, vol. 4, no. 4, 2003.
6. D. W. Huang, B. T. Sherman, Q. Tan, J. Kir, D. Liu, D. Bryant, Y. Guo, R. Stephens, M. W. Baseler, H. C. Lane, and R. A. Lempicki, "DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists," Nucleic Acids Research, vol. 35, no. Suppl. S, pp. W169-W175, Jul 2007.
7. R. Apweiler, A. Bairoch, C. Wu, W. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. Martin, D. Natale, C. O'Donovan, N. Redaschi, and L. Yeh, "UniProt: the Universal Protein knowledgebase," Nucleic Acids Research, vol. 32, no. Sp. Iss. SI, pp. D115-D119, Jan 1 2004.