Genetic polymorphisms of 15 STR loci in the population of the island of Cres (Croatia)

Annals of Human Biology

Volumn 38, Issue 1, 2011, Pages 12-21

  Novokmet, Natalija ^a   Marjanović, Damir ^b,c   Škaro, Vedrana ^b   Projić, Petar ^b   Lauc, Gordan ^b,d   Grahovac, Blaženka ^e   Ostojić, Saša ^e   Kapović, Miljenko ^e   Rudan, Pavao ^a  

^a INSTITUTE FOR ANTHROPOLOGICAL RESEARCH   (Croatia)

^b GENOS GLYCOSCIENCE RESEARCH LABORATORY   (Croatia)

^c Institute for Genetic Engineering and Biotechnology   (Bosnia and Herzegovina)

^d JOSIP JURAJ STROSSMAYER UNIVERSITY OF OSIJEK   (Croatia)

^e UNIVERSITY OF RIJEKA   (Croatia)

Author keywords

Cres; Croatia; genetic structure; island isolates; STR polymorphisms

Indexed keywords

MICROSATELLITE DNA;

GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; HETEROGENEITY; NUMERICAL MODEL; POLYMORPHISM; SUBPOPULATION;

ALLELE; ARTICLE; CROATIA; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHY; HUMAN; POLYMERASE CHAIN REACTION;

ALLELES; CROATIA; GENE FREQUENCY; GENETIC VARIATION; GEOGRAPHY; HUMANS; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC;

EID: 78650603704     PISSN: 03014460     EISSN: 14645033     Source Type: Journal    
DOI: 10.3109/03014461003789127     Document Type: Article

References (46)

1. Agrawal S, Khan F. 2005. Reconstructing recent human phylogenies with forensic STR loci: a statistical approach. BMC Genetics 6:47.
2. Applied Biosystems. 2005. AmpFlSTR Identifiler PCR amplification kit user's manual. Foster City, CA: Applied Biosystems.
3. Bar W, Brinkman B, Budowle B, Carracedo A, Gill P, Lincoln P, Mayr WR, Olaisen B. 1997. DNA recommendations: further report of the DNA commission of the ISHF regarding the use of short tandem repeat systems. Int J Legal Med 110:175-176.
4. Bosch E, Calafell F, Pérez-Lezaun A, Clarimón J, Comas D, Mateu E, Martínez-Arias R, Morera B, Brakez Z, Akhayat O, Sefiani A, Hariti G, Cambon-Thomsen A, Bertranpetit J. 2000. Genetic structure of north-west Africa revealed by STR analysis. Eur J Hum Genet 8:360-366.
5. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 386:455-457.
6. Butler JM. 2006. Genetics and genomics of core STR loci used in human identity testing. J Forensic Sci 51:253-265.
7. Corella A, Bert F, Pérez-Pérez A, Gené M, Turbón D. 2008. HUMTH01, HUMVWA31A, HUMCSF1PO and HUMTPOX polymorphisms in Amerindian populations living in the Beni department of Bolivia. Ann Hum Biol 35:556-564.
8. Cus-Rukonić J. 1982. Arheoloska topografija otoka Cresa i Losinja. In: ́ Cecuk B, Marović I, Rapanić Z, editors. Arheoloska istrazivanja na otocima Cresu i Losinju. Zagreb: Hrvatsko arheolosko drustvo. p 9-17.
9. Cus-Rukonić J. 1989. Pregled nalaza i nalazista broncanog doba na otocima Cresu i Losinju. Arheoloski vestnik 39-40:495-508.
10. Deka R, Shriver MD, You LM, Robert EF, Chakraborty R. 1995. Intra-and inter-population diversity at short tandem repeat loci in diverse populations of the world. Electrophoresis 16:1659-1664.
11. Deka R, Shriver MD, Yu LM, Heidreich EM, Jin L, Zhong Y, McGarvey ST, Agarwal SS, Bunker CH, Miki T, Hundrieser J, Yin SJ, Raskin S, Barrantes R, Ferrell RE, Chakraborty R. 1999. Genetic variation at twenty-three microsatellite loci in sixteen human populations. J Genet 78:99-121.
12. Destro-Bisol G, Boschi I, Caglia A, Tofanelli S, Pascali V, Paoli G, Spedini G. 2000. Microsatellite variation in central Africa: an analysis of intrapopulation and interpopulation genetic diversity. Am J Phys Anthropol 112:319-337.
13. Dib C, Fauré S, Fizames C, Samson D, Drouot N, Vignal A, Millasseau P, Marc S, Hazan J, Seboun E, Lathrop M, Gyapay G, Morissette J, Weissenbach J. 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
14. Gill P, Ivanov P, Kimpton C, Piercy R, Benson N, Tully G, Evett I, Hagelberg E, Sullivan K. 1994. Identification of the remains of the Romanov family by DNA analysis. Nat Genet 6:130-135.
15. Goldstein D, Riuz Linares A, Cavalli-Sforza L, Feldman M. 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics 139:463-471.
16. Guo SW, Thompson EA. 1992. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48: 361-372.
17. Hearn CM, Ghosh S, Todd JM. 1992. Microsatellites for linkage analysis of genetic traits. Trends Genet 8:288-294.
18. Jin L, Baskett ML, Cavalli-Sforza LL, Zhivotovsky LA, Feldman MW, Rosenberg NA. 2000. Microsatellite evolution in modern humans: a comparison of two data sets from the same populations. Ann Hum Genet 64:117-134.
19. Jorde LB, Watkins WS, Bamshad MJ, Dixon ME, Ricker CE, Seielstad MT, Batzer MA. 2000. The distribution of human genetic diversity: a comparison of mitochondrial, autosomal, and Y-chromosome data. Am J Hum Genet 66:979-988.
20. Khan F, Pandey AK, Tripathi M, Talwar S, Bisen PS, Borkar M, Agrawal S. 2007. Genetic affinities between endogamous and inbreeding populations of Uttar Pradesh. BMC Genetics 8:12.
21. Kirigin B. 1996. Issa, grcki grad na Jadranu. Zagreb: Matica Hrvatska.
22. Komso D, Miracle PT, Boschian G. 2005. Vela spilja. Hrvatski arheoloski godisnjak 1:172-175.
23. Levinson G, Gutman GA. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221.
24. Martinović I, Barać L, Furac I, Janićijević B, Kubat M, Pericić M, Vidović B, Rudan P. 1999. STR polymorphisms in the population of the island of Hvar. Hum Biol 71:341-352.
25. Martinović Klarić I. 2000. Population structure of the rural communities on the island of Krk (Croatia): a comparison of genetic, cultural, and geographic data. Am J Hum Biol 12:509-525.
26. Martinović Klarić I, Barać L, Buković D, Furac I, Geber G. 2000. STR polymorphisms in the population of the island of Brac, Croatia. HOMO 51:141-150.
27. Martinović Klarić I, Barać L, Buković D, Furac I, Geber G, Janićijević B, Kubat M, Pericić M, Vidović Pupić B, Rudan P. 2001. Short tandem repeat (STR) variation in eight village populations of the islad of Korcula (Croatia). Ann Hum Biol 28:281-294.
28. Martinović Klarić I, Pericić M, Barać Lauc L, Janićijević B, Kubat M, Pavicić D, Rudan I, Wang N, Jin L, Chakraborty R, Deka R, Rudan P. 2005. Genetic variation at nine short tandem repeat loci among islanders of the Eastern Adriatic coast of Croatia. Hum Biol 77: 471-486.
29. Montelius K, Karlsson AO, Holmlund G 2008. STR data for the AmpFlSTR identifiler loci from Swedish population in comparison to European, as well as with non-European population. Forensic Sci Int: Genetics 2:e49-e52.
30. Novokmet N, Pavcec Z. 2007. Genetic polymorphisms of 15 AmpFlSTR identifiler loci in Romani population from Northwestern Croatia. Forensic Sci Int 168:43-46.
31. Rowold DJ, Herrera RJ. 2003. Inferring recent human phylogenies using forensic STR technology. Forensic Sci Int 133:260-265.
32. Rudan P. 1972. Etude sur les dermatoglyphes digito-palmar des habitants de l'Ille de Hvar. PhD Thesis. University of Paris, Paris, France.
33. Rudan P, Angel JL, Bennett LA. 1987. Historical processes and biological structure of the populations: example from the island of Korcula. Acta Morphol Nether Scand 25:69-82.
34. Rudan P, Roberts DF, Sujoldzić A, Macarol B, Zuskin E, Kastelan A. 1982. Strategy of anthropological research on the island of Hvar. Coll Antropol 6:39-46.
35. Samudrala N, Farook VS, Dodd GD, Puppala S, Schneider J, Fowler S, Granato R, Dyer TD, Arya R, Almasy L, Jenkinson CP, Diehl AK, Blangero J, Duggirala R. 2008. Autosomal genome-wide linkage analysis to identify loci for gallbladder wall thickness in Mexican Americans. Hum Biol 80:11-28.
36. Schneider S, Roessli SD, Excoffier L. 2000. A software for population genetics data analysis. Arlequin version 2.0. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
37. Shriver MD, Jin L, Ferrell RE, Deka R. 1997. Microsatellite data support an early population expansion in Africa. Genome Res 7:586-591.
38. Skok P. 1950. Slavenstvo i romanstvo na jadranskim otocima. Zagreb: Jadranski institut, JAZU.
39. Stipcević A. 1989. Iliri-povijest, zivot, kultura. Zagreb: Skolska knjiga.
40. Sun G, McGarvey ST, Bayoumi R, Mulligan CJ, Barrantes R, Raskin S, Zhong Y, Akey J, Chakraborty R, Deka R. 2003. Global genetic variation at nine short tandem repeat loci and implications on forensic genetics. Eur J Hum Genet 11:39-49.
41. Takazaki N, Nei M. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399.
42. Urquhart A, Kimpton C, Downes T, Gill P. 1994. Variation in short tandem repeat sequences\a survey of twelve microsatellite loci for use as forensic identification markers. Int J Legal Med 107:13-20.
43. Waddle DM, Sokal RR, Rudan P. 1998. Factors affecting population variation in eastern Adriatic isolates (Croatia). Hum Biol 70: 845-864.
44. Zhivotovsky LA, Bennett L, Bowcock AM, Feldman MW. 2000. Human population expansion and microsatellite variation. Mol Biol Evol 17:757-767.
45. Zhivotovsky LA, Rosenberg NA, Feldman MW. 2003. Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. Am J Hum Genet 72: 1171-1186.
46. Zhivotovsky LA, Veremeichyk VM, Kuzub NN, Atramentova LJA, Udina IG, Kartel NA, Tsybovsky IS. 2009. A reference data base on STR allele frequencies in the Belarus population developed from paternity cases. For Sci Int Genetics 3:e107-e109.