Development of a polyprobe to detect six viroids of pome and stone fruit trees

Journal of Virological Methods

Volumn 171, Issue 1, 2011, Pages 91-97

  Lin, Liming ^a   Li, Ruhui ^a   Mock, Ray ^a   Kinard, Gary ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Detection; Dot blot hybridization; Polyprobe; Pome and stone fruits; Viroids

Indexed keywords

COMPLEMENTARY RNA; DIGOXIGENIN;

APPLE DIMPLE FRUIT VIROID; APPLE FRUIT CRINKLE VIROID; APPLE SCAR SKIN VIROID; ARTICLE; BACTERIOPHAGE T7; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DILUTION; DOT HYBRIDIZATION; HOP STUNT VIROID; INFECTION CONTROL; INOCULATION; MIXED INFECTION; MOLECULAR CLONING; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PEACH; PEACH LATENT MOSAIC VIROID; PEAR; PEAR BLISTER CANKER VIROID; PLANT GENETICS; PLANT TISSUE; PLANT VIRUS; POLYPROBE; POME FRUIT; PRIORITY JOURNAL; PROMOTER REGION; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; STONE FRUIT; UNITED STATES; VALIDATION PROCESS; VIROID; VIROIDAL PLANT DISEASE; VIRUS DETECTION; VIRUS ISOLATION;

MALUS; NUCLEIC ACID HYBRIDIZATION; PLANT DISEASES; PRUNUS; PYRUS; ROSACEAE; TREES; UNITED STATES; VIROIDS; VIROLOGY;

PRUNUS PERSICA; PYRUS; VIROIDS;

EID: 78650540986     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.10.006     Document Type: Article

References (37)

1. Ambrós S., Desvignes J.C., Llácer G., Flores R. Peach latent mosaic and pear blister canker viroids: detection by molecular hybridization and relationships with specific maladies affecting peach and pear trees. Acta Hortic. 1995, 386:515-521.
2. Astruc N., Marcos J.F., Macquaire G., Candresse T., Pallas V. Studies on the diagnosis of hop stunt viroid in fruit trees: identification of new hosts and application of a nucleic acid extraction procedure based on non-organic solvents. Eur. J. Plant Pathol. 1996, 102:837-846.
3. Boubourakas I.N., Arambatzis C., Kyriakopoulou P.E., Dovas C. Amelioration of a reverse transcription polymerase chain reaction (RT-PCR) for the detection of ASSVd, PBCVd and PLMVd viroids, and their presence in cultivated and wild pome and stone fruits in Greece. Acta Hortic. 2008, 781:519-527.
4. Boubourakas I.N., Fukuta S., Kyriakopoulou P.E. Sensitive and rapid detection of peach latent mosaic viroid by the reverse transcription loop-mediated isothermal amplification. J. Virol. Methods 2009, 160:63-68.
5. Cañizares M.C., Marcos J.F., Pallás V. Molecular characterization of an almond isolate of hop stunt viroid (HSVd) and conditions for eliminating spurious hybridization in its diagnosis in almond samples. Eur. J. Plant Pathol. 1999, 105:553-558.
6. Cohen O., Batuman O., Stanbekova G., Sano T., Mawassi M., Bar-Joseph M. Construction of a multiprobe for the simultaneous detection of viroids infecting citrus trees. Virus Genes 2006, 33:287-292.
7. Diener T.O. Potato spindle tuber "virus": IV. A replicating, low molecular weight RNA. Virology 1971, 45:411-428.
8. Desvignes J.C. Peach latent mosaic and its relation to peach mosaic and peach yellow mosaic diseases. Acta Hortic. 1986, 193:51-57.
9. Desvignes J.C., Cornaggia D., Grasseau N., Ambrós S., Flores R. Pear blister canker viroid: host range and improved bioassay with two new pear indicators. Fieud 37 and Fieud 110. Plant Dis. 1999, 83:419-422.
10. Desvignes J.C., Grasseau N., Boyé R., Cornaggia D., Aparicio F., Di Serio F., Flores R. Biological properties of apple scar skin viroid: isolates, host range, different sensitivity of apple cultivars, elimination, and natural transmission. Plant Dis. 1999, 83:768-772.
11. Di Serio F., Malfitano M., Alioto D., Ragozzino A., Flores R. Apple dimple fruit viroid: sequence variability and its specific detection by multiplex fluorescent RT-PCR in the presence of Apple scar skin viroid. J. Plant Pathol. 2002, 84:27-34.
12. Di Serio F., Malfitano M., Alito D., Ragozzino A., Desvignes J.C., Flores R. Apple dimple fruit viroid: fulfillment of Koch's postulates and symptom characteristics. Plant Dis. 2001, 85:179-182.
13. Faggioli F., Ragozzino E., Barba M. Simultaneous detection of stone or pome fruit viroids by single tube RT-PCR. Acta Hortic. 2001, 550:59-63.
14. Faggioli F., Ragozzino E. Detection of pome fruit viroids by RT-PCR using a single primer pair. J. Plant Pathol. 2002, 84(2):125-128.
15. Fekih Hassen I., Roussel S., Kummert J., Fakhfakh H., Marrakchi M., Jijakli M.H. Development of a rapid RT-PCR test for the detection of peach latent mosaic viroid, pear blister canker viroid, hop stunt viroid and apple scar skin viroid in fruit trees from Tunisia. J. Phytopathol. 2006, 154(4):217-223.
16. Flores R., Hernández C., Martínez de Alba A.E., Daròs J.A., Di Serio F. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 2005, 43:117-139.
17. Flores R., Randles J.W., Owens R.A., Bar-Joseph M., Diener T.O. Viroids. Virus Taxonomy, Eight Report of the International Committee on Taxonomy of Viruses 2005, 1145-1159. Elsevier/Academic Press, London, UK. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, A.L. Ball (Eds.).
18. Giunchedi L., Gentit P., Nemchinov L., Poggi-Pollini C., Hadidi A. Plum spotted fruit: a disease associated with peach latent mosaic viroid. Acta Hortic. 1998, 472:571-579.
19. Grasseau N., Macquaire G., Boye R., Cornaggia D., Desvignes J.C. Peach red marbling and peach sooty ringspot, two new virus-like degenerative diseases of Prunus. Plant Pathol. 1999, 48:395-401.
20. Viroids 2003, CSIRO Publishing, Collingwood, Victoria, Australia. A. Hadidi, R. Flores, J.W. Randles, J.S. Semancik (Eds.).
21. Hadidi A., Yang X. Detection of pome fruit viroids by enzymatic cDNA amplication. J. Virol. Methods 1990, 30(3):261-269.
22. Hadidi A., Giunched L., Shamloul A.M., Poggi-Pollini C., Amer M.A. Occurrence of peach latent mosaic viroid in stone fruits and its transmission with contaminated blades. Plant Dis. 1997, 81:154-158.
23. Hassan M., Myrta A., Polak J. Simultaneous detection and identification of four pome fruit viruses by one-tube pentaplex RT-PCR. J. Virol. Methods 2006, 133:124-129.
24. Herranz M.C., Sanchez-Navarro J.A., Aparicio F., Pallás V. Simultaneous detection of six stone fruit viruses by non-isotopic molecular hybridization using a unique riboprobe or'polyprobe'. J. Virol. Methods 2005, 124:49-55.
25. Ito T., Ieki H., Ozaki K. Simultaneous detection of six citrus viroids and Apple stem grooving virus from citrus plants by multiplex reverse transcription polymerase chain reaction. J. Virol. Methods 2002, 106:235-239.
26. Joyce P.A., Constable F.E., Crosslin J., Eastwell K., Howell W.E., Rodoni B.C. Characterisation of Pear blister canker viroid isolates from Australian pome fruit orchards. Australas. Plant Pathol. 2006, 35:465-471.
27. Kofalvi S.A., Marcos J.F., Canizares M.C., Pallas V., Candresse T. Hop stunt viroid (HSVd) sequence variants from Prunus species: evidence for recombination between HSVd isolates. J. Gen. Virol. 1997, 78:3177-3186.
28. Kyriakopoulou P.E., Giunchedi L., Hadidi A. Peach latent mosaic and pome fruit viroids in naturally infected cultivated pear Pyrus communis and wild pear P. amygdaliformis: implications on possible origin of these viroids in the Mediterranean region. J. Plant Pathol. 2001, 83:51-62.
29. Li R., Mock R., Huang Q., Abad J., Hartung J., Kinard G. A reliable and inexpensive method of nucleic acid extraction for the PCR-based detection of diverse plant pathogens. J. Virol. Methods 2008, 154:48-55.
30. Lolic B., Afechtal M., Matic S., Myrta A., Di Serio F. Detection by tissue-printing of pome fruit viroids and characterization of pear blister canker viroid in Bosnia and Herzegovina. J. Plant Pathol. 2007, 89:369-375.
31. Nakaune R., Nakano M. Identification of a new Apscaviroid from Japanese persimmon. Arch Virol. 2008, 153:969-972.
32. Podleckis E.V., Hammond R.W., Hurtt S.S., Hadidi A. Chemiluminescent detection of potato and pome fruit viroids by digoxigenin-labelled dot-blot and tissue blot hybridization. J. Virol. Methods 1993, 43:147-158.
33. Ragozzino E., Faggioli F., Barba M. Development of a one tube-one step RT-PCR protocol for the detection of seven viroids in four genera: Apscaviroid, Hostuviroid, Pelamoviroid and Pospiviroid. J. Virol. Methods 2004, 121:25-29.
34. Sano T., Isono S., Matsuki K., Kawaguchi-Ito Y., Tanaka K., Kondo K., Iijima A., Bar-Joseph M. Vegetative propagation and its possible role as a genetic bottleneck in the shaping of the apple fruit crinkle viroid populations in apple and hop plants. Virus Genes 2008, 37:298-303.
35. Shamloul A.M., Faggioli F., Keith J.M., Hadidi A. A novel multiplex RT-PCR probe capture hybridization (RT-PCR-ELISA) for simultaneous detection of six viroids in four genera: Apscaviroid, Hostuviroid, Pelamoviroid, and Pospiviroid. J. Virol. Methods 2002, 105:115-121.
36. Torres H., Gómez G., Pallás V., Stamo B., Shalaby A., Aouane B., Gavriel I., Kominek P., Caglayan K., Sipahioglu M., Michelutti R., Myrta A., Fiore N. Detection by tissue printing of stone fruit viroids, from Europe, the Mediterranean and North and South America. Acta Hortic. 2004, 657:379-383.
37. Wang X., Zhou C., Tang K., Zhou Y., Li Z. A rapid one-step multiplex RT-PCR assay for the simultaneous detection of five citrus viroids in China. Eur. J. Plant Pathol. 2009, 124:175-180.