Computational approach to ensure the stability of the favorable ATP binding site in E. coli Hfq

Journal of Molecular Graphics and Modelling

Volumn 29, Issue 4, 2010, Pages 573-580

  Lazar, Prettina ^a   Kim, Songmi ^a   Lee, Yuno ^a   Lee, Keun Woo ^a  

^a Gyeongsang National University   (South Korea)

Author keywords

Aromatic stacking; ATP; Destabilization; Host factor protein Hfq; Molecular dynamics simulation; Mutation; Oligoribonucleotide; Post transcriptional regulation; RNA

Indexed keywords

AROMATIC STACKING; ATP; DESTABILIZATION; HOST FACTOR PROTEIN-HFQ; MOLECULAR DYNAMICS SIMULATION; MUTATION; OLIGORIBONUCLEOTIDE; POST-TRANSCRIPTIONAL REGULATIONS;

AROMATIC COMPOUNDS; AROMATIZATION; BINDING ENERGY; ESCHERICHIA COLI; MOLECULAR MECHANICS; RNA; STOICHIOMETRY; TRANSCRIPTION FACTORS;

MOLECULAR DYNAMICS;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; HFQ PROTEIN; RNA; TYROSINE; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; COMPUTER PROGRAM; CONTROLLED STUDY; ESCHERICHIA COLI; MOLECULAR DOCKING; MOLECULAR DYNAMICS; MUTATION; MUTATIONAL ANALYSIS; PHENOTYPE; PRIORITY JOURNAL; PROTEIN STRUCTURE;

ADENOSINE TRIPHOSPHATE; BINDING SITES; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HOST FACTOR 1 PROTEIN; HYDROGEN BONDING; LIGANDS; MODELS, MOLECULAR; MUTANT PROTEINS; POROSITY; PROTEIN BINDING; PROTEIN STABILITY; PROTEIN STRUCTURE, SECONDARY; REPRODUCIBILITY OF RESULTS; RNA, BACTERIAL; STATIC ELECTRICITY; TIME FACTORS; TYROSINE;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; ENTEROBACTERIOPHAGE QBETA;

EID: 78650516983     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2010.11.003     Document Type: Article

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