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Volumn 16, Issue 9, 2007, Pages 1830-1841

Sm-like protein Hfq: Location of the ATP-binding site and the effect of ATP on Hfq-RNA complexes

Author keywords

Conformational change; Electrophoresis; Hfq; Sm; Sm like; Translation

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; AMINO ACID; BACTERIAL PROTEIN; BINDING PROTEIN; ESCHERICHIA COLI PROTEIN; NUCLEIC ACID; PROTEIN HFQ; RNA; RNA POLYMERASE; UNCLASSIFIED DRUG;

EID: 34548388002     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.072883707     Document Type: Article
Times cited : (19)

References (38)
  • 3
    • 0033869982 scopus 로고    scopus 로고
    • Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid
    • Azam, T.A., Hiraga, S., and Ishihama, A. 2000. Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid. Genes Cells 5: 613-626.
    • (2000) Genes Cells , vol.5 , pp. 613-626
    • Azam, T.A.1    Hiraga, S.2    Ishihama, A.3
  • 4
    • 0037276123 scopus 로고    scopus 로고
    • Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
    • Brescia, C.C., Mikulecky, P.J., Feig, A.L., and Sledjeski, D.D. 2003. Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure. RNA 9: 33-43.
    • (2003) RNA , vol.9 , pp. 33-43
    • Brescia, C.C.1    Mikulecky, P.J.2    Feig, A.L.3    Sledjeski, D.D.4
  • 5
    • 0017683069 scopus 로고
    • Host factor for coliphage Q β RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli
    • DuBow, M.S., Ryan, T., Young, R.A., and Blumenthal, T. 1977. Host factor for coliphage Q β RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli. Mol. Gen. Genet. 153: 39-43.
    • (1977) Mol. Gen. Genet , vol.153 , pp. 39-43
    • DuBow, M.S.1    Ryan, T.2    Young, R.A.3    Blumenthal, T.4
  • 7
    • 0015500282 scopus 로고
    • Bacterial proteins required for replication of phage Q ribonucleic acid. Purification and properties of host factor I, a ribonucleic acid-binding protein
    • Franze de Fernandez, M.T., Hayward, W.S., and August, J.T. 1972. Bacterial proteins required for replication of phage Q ribonucleic acid. Purification and properties of host factor I, a ribonucleic acid-binding protein. J. Biol. Chem. 247: 824-831.
    • (1972) J. Biol. Chem , vol.247 , pp. 824-831
    • Franze de Fernandez, M.T.1    Hayward, W.S.2    August, J.T.3
  • 8
    • 0028107450 scopus 로고
    • Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q β
    • Kajitani, M., Kato, A., Wada, A., Inokuchi, Y., and Ishihama, A. 1994. Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q β. J. Bacteriol. 176: 531-534.
    • (1994) J. Bacteriol , vol.176 , pp. 531-534
    • Kajitani, M.1    Kato, A.2    Wada, A.3    Inokuchi, Y.4    Ishihama, A.5
  • 9
    • 0242380640 scopus 로고    scopus 로고
    • Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs
    • Le Derout, J., Folichon, M., Briani, F., Deho, G., Regnier, P., and Hajnsdorf, E. 2003. Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs. Nucleic Acids Res. 31: 4017-4023.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4017-4023
    • Le Derout, J.1    Folichon, M.2    Briani, F.3    Deho, G.4    Regnier, P.5    Hajnsdorf, E.6
  • 10
    • 3142564584 scopus 로고    scopus 로고
    • The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
    • Lenz, D.H., Mok, K.C., Lilley, B.N., Kulkarni, R.V., Wingreen, N.S., and Bassler, B.L. 2004. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118: 69-82.
    • (2004) Cell , vol.118 , pp. 69-82
    • Lenz, D.H.1    Mok, K.C.2    Lilley, B.N.3    Kulkarni, R.V.4    Wingreen, N.S.5    Bassler, B.L.6
  • 11
    • 0028363358 scopus 로고
    • Pattern recognition and classification of images of biological macromolecules using artificial neural networks
    • Marabini, R. and Carazo, J.M. 1994. Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys. J. 66: 1804-1814.
    • (1994) Biophys. J , vol.66 , pp. 1804-1814
    • Marabini, R.1    Carazo, J.M.2
  • 15
    • 7044285063 scopus 로고    scopus 로고
    • The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
    • Mohanty, B.K., Maples, V.F., and Kushner, S.R. 2004. The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol. Microbiol. 54: 905-920.
    • (2004) Mol. Microbiol , vol.54 , pp. 905-920
    • Mohanty, B.K.1    Maples, V.F.2    Kushner, S.R.3
  • 16
    • 0142240435 scopus 로고    scopus 로고
    • Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
    • Moll, I., Afonyushkin, T., Vytvytska, O., Kaberdin, V.R., and Blasi, U. 2003. Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 9: 1308-1314.
    • (2003) RNA , vol.9 , pp. 1308-1314
    • Moll, I.1    Afonyushkin, T.2    Vytvytska, O.3    Kaberdin, V.R.4    Blasi, U.5
  • 19
    • 0344059121 scopus 로고    scopus 로고
    • Structure and assembly of an augmented Sm-like archaeal protein 14-mer
    • Mura, C., Phillips, M., Kozhukhovsky, A., and Eisenberg, D. 2003. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proc. Natl. Acad. Sci. 100: 4539-4544.
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 4539-4544
    • Mura, C.1    Phillips, M.2    Kozhukhovsky, A.3    Eisenberg, D.4
  • 21
    • 0034729584 scopus 로고    scopus 로고
    • Sm-like proteins wRING the neck of mRNA
    • Pannone, B.K. and Wolin, S.L. 2000. Sm-like proteins wRING the neck of mRNA. Curr. Biol. 10: 478-481.
    • (2000) Curr. Biol , vol.10 , pp. 478-481
    • Pannone, B.K.1    Wolin, S.L.2
  • 22
    • 0036645689 scopus 로고    scopus 로고
    • Structures of the pleiotropic translational regulator HFq and an HFq-RNA complex: A bacterial Sm-like protein
    • Schumacher, M.A., Rearson, R.F., Moller, T., Valentin-Hansen, P., and Brennan, R.G. 2002. Structures of the pleiotropic translational regulator HFq and an HFq-RNA complex: A bacterial Sm-like protein. EMBO J. 21: 3546-3556.
    • (2002) EMBO J , vol.21 , pp. 3546-3556
    • Schumacher, M.A.1    Rearson, R.F.2    Moller, T.3    Valentin-Hansen, P.4    Brennan, R.G.5
  • 23
    • 0035834062 scopus 로고    scopus 로고
    • Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA
    • Sengupta, J., Agrawal, R.K., and Frank, J. 2001. Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proc. Natl. Acad. Sci. 98: 11991-11996.
    • (2001) Proc. Natl. Acad. Sci , vol.98 , pp. 11991-11996
    • Sengupta, J.1    Agrawal, R.K.2    Frank, J.3
  • 24
    • 0035104707 scopus 로고    scopus 로고
    • HFq is necessary for regulation by the untranslated RNA DsrA
    • Sledjeski, D.D., Whitman, C., and Zhang, A. 2001. HFq is necessary for regulation by the untranslated RNA DsrA. J. Bacteriol. 183: 1997-2005.
    • (2001) J. Bacteriol , vol.183 , pp. 1997-2005
    • Sledjeski, D.D.1    Whitman, C.2    Zhang, A.3
  • 25
    • 33645065354 scopus 로고    scopus 로고
    • Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa
    • Sonnleitner, E., Schuster, M., Sorger-Domenigg, T., Greenberg, E.P., and Blasi, U. 2006. Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa. Mol. Microbiol. 59: 1542-1558.
    • (2006) Mol. Microbiol , vol.59 , pp. 1542-1558
    • Sonnleitner, E.1    Schuster, M.2    Sorger-Domenigg, T.3    Greenberg, E.P.4    Blasi, U.5
  • 26
    • 0037709369 scopus 로고    scopus 로고
    • Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq
    • Sukhodolets, M.V. and Garges, S. 2003. Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry 42: 8022-8034.
    • (2003) Biochemistry , vol.42 , pp. 8022-8034
    • Sukhodolets, M.V.1    Garges, S.2
  • 27
    • 33746525428 scopus 로고    scopus 로고
    • Ribosomal protein S1 promotes transcriptional cycling
    • Sukhodolets, M.V., Garges, S., and Adhya, S. 2006. Ribosomal protein S1 promotes transcriptional cycling. RNA 12: 1505-1513.
    • (2006) RNA , vol.12 , pp. 1505-1513
    • Sukhodolets, M.V.1    Garges, S.2    Adhya, S.3
  • 28
    • 33645939935 scopus 로고    scopus 로고
    • Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites
    • Sun, X. and Wartell, R.M. 2006. Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites. Biochemistry 45: 4875-4887.
    • (2006) Biochemistry , vol.45 , pp. 4875-4887
    • Sun, X.1    Wartell, R.M.2
  • 29
    • 0036714801 scopus 로고    scopus 로고
    • Predicted structure and phyletic distribution of the RNA-binding protein Hfq
    • Sun, X., Zhulin, I., and Wartell, R.M. 2002. Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res. 30: 3662-3671.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3662-3671
    • Sun, X.1    Zhulin, I.2    Wartell, R.M.3
  • 31
    • 0030711638 scopus 로고    scopus 로고
    • Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12
    • Tsui, H.C.T., Feng, G., and Winkler, M.E. 1997. Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12. J. Bacteriol. 179: 7476-7487.
    • (1997) J. Bacteriol , vol.179 , pp. 7476-7487
    • Tsui, H.C.T.1    Feng, G.2    Winkler, M.E.3
  • 32
    • 0028243445 scopus 로고
    • Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
    • Tsui, H.C.T., Leung, H.C.E., and Winkler, M.E. 1994. Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol. Microbiol. 13: 35-49.
    • (1994) Mol. Microbiol , vol.13 , pp. 35-49
    • Tsui, H.C.T.1    Leung, H.C.E.2    Winkler, M.E.3
  • 33
    • 1642565815 scopus 로고    scopus 로고
    • The bacterial Sm-like protein Hfq: A key player in RNA transactions
    • Valentin-Hansen, P., Eriksen, M., and Udesen, C. 2004. The bacterial Sm-like protein Hfq: A key player in RNA transactions. Mol. Microbiol. 51: 1525-1533.
    • (2004) Mol. Microbiol , vol.51 , pp. 1525-1533
    • Valentin-Hansen, P.1    Eriksen, M.2    Udesen, C.3
  • 34
    • 0032564363 scopus 로고    scopus 로고
    • Host-factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability
    • Vytvytska, O., Jakobsen, J.S., Balcunate, G., Andersen, J.S., Baccarini, M., and von Gabain, A. 1998. Host-factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability. Proc. Natl. Acad. Sci. 95: 14118-14123.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 14118-14123
    • Vytvytska, O.1    Jakobsen, J.S.2    Balcunate, G.3    Andersen, J.S.4    Baccarini, M.5    von Gabain, A.6
  • 35
    • 0037133946 scopus 로고    scopus 로고
    • Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
    • Wassarman, K.M. 2002. Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes. Cell 109: 141-144.
    • (2002) Cell , vol.109 , pp. 141-144
    • Wassarman, K.M.1
  • 36
    • 0035106688 scopus 로고    scopus 로고
    • A biochemical function for the Sm complex
    • Zhang, D., Abovich, N., and Rosbash, M. 2001. A biochemical function for the Sm complex. Mol. Cell 7: 319-329.
    • (2001) Mol. Cell , vol.7 , pp. 319-329
    • Zhang, D.1    Abovich, N.2    Rosbash, M.3
  • 37
    • 0036163624 scopus 로고    scopus 로고
    • The Sm-like HFq protein increases OxyS RNA interaction with target mRNAs
    • Zhang, A., Wassarman, K.M., Ortega, J., Steven, A.C., and Storz, G. 2002. The Sm-like HFq protein increases OxyS RNA interaction with target mRNAs. Mol. Cell 9: 11-22.
    • (2002) Mol. Cell , vol.9 , pp. 11-22
    • Zhang, A.1    Wassarman, K.M.2    Ortega, J.3    Steven, A.C.4    Storz, G.5
  • 38
    • 0043104253 scopus 로고
    • The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system
    • Zylicz, M., LeBowitz, J.H., McMacken, R., and Georgopoulos, C. 1983. The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system. Proc. Natl. Acad. Sci. 80: 6431-6435.
    • (1983) Proc. Natl. Acad. Sci , vol.80 , pp. 6431-6435
    • Zylicz, M.1    LeBowitz, J.H.2    McMacken, R.3    Georgopoulos, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.