-
1
-
-
0036304662
-
Structural modeling of the Sm-like protein Hfq from Escherichia coli
-
Arluison, V., Derreumaux, P., Allemand, F., Folichon, M., Hajnsdorf, E., and Régnier, P. 2002. Structural modeling of the Sm-like protein Hfq from Escherichia coli. J. Mol. Biol. 320: 705-712.
-
(2002)
J. Mol. Biol
, vol.320
, pp. 705-712
-
-
Arluison, V.1
Derreumaux, P.2
Allemand, F.3
Folichon, M.4
Hajnsdorf, E.5
Régnier, P.6
-
2
-
-
30344461900
-
Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins
-
Arluison, V., Mura, C., Guzman, M.R., Liquier, J., Pellegrini, O., Gingery, M., Regnier, P., and Marco, S. 2006. Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins. J. Mol. Biol. 356: 86-96.
-
(2006)
J. Mol. Biol
, vol.356
, pp. 86-96
-
-
Arluison, V.1
Mura, C.2
Guzman, M.R.3
Liquier, J.4
Pellegrini, O.5
Gingery, M.6
Regnier, P.7
Marco, S.8
-
3
-
-
0033869982
-
Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid
-
Azam, T.A., Hiraga, S., and Ishihama, A. 2000. Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid. Genes Cells 5: 613-626.
-
(2000)
Genes Cells
, vol.5
, pp. 613-626
-
-
Azam, T.A.1
Hiraga, S.2
Ishihama, A.3
-
4
-
-
0037276123
-
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
-
Brescia, C.C., Mikulecky, P.J., Feig, A.L., and Sledjeski, D.D. 2003. Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure. RNA 9: 33-43.
-
(2003)
RNA
, vol.9
, pp. 33-43
-
-
Brescia, C.C.1
Mikulecky, P.J.2
Feig, A.L.3
Sledjeski, D.D.4
-
5
-
-
0017683069
-
Host factor for coliphage Q β RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli
-
DuBow, M.S., Ryan, T., Young, R.A., and Blumenthal, T. 1977. Host factor for coliphage Q β RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli. Mol. Gen. Genet. 153: 39-43.
-
(1977)
Mol. Gen. Genet
, vol.153
, pp. 39-43
-
-
DuBow, M.S.1
Ryan, T.2
Young, R.A.3
Blumenthal, T.4
-
6
-
-
0347519274
-
The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation
-
Folichon, M., Arluison, V., Pellegrini, O., Huntzinger, E., Regnier, P., and Hajnsdorf, E. 2003. The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res. 31: 7302-7310.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 7302-7310
-
-
Folichon, M.1
Arluison, V.2
Pellegrini, O.3
Huntzinger, E.4
Regnier, P.5
Hajnsdorf, E.6
-
7
-
-
0015500282
-
Bacterial proteins required for replication of phage Q ribonucleic acid. Purification and properties of host factor I, a ribonucleic acid-binding protein
-
Franze de Fernandez, M.T., Hayward, W.S., and August, J.T. 1972. Bacterial proteins required for replication of phage Q ribonucleic acid. Purification and properties of host factor I, a ribonucleic acid-binding protein. J. Biol. Chem. 247: 824-831.
-
(1972)
J. Biol. Chem
, vol.247
, pp. 824-831
-
-
Franze de Fernandez, M.T.1
Hayward, W.S.2
August, J.T.3
-
8
-
-
0028107450
-
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q β
-
Kajitani, M., Kato, A., Wada, A., Inokuchi, Y., and Ishihama, A. 1994. Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q β. J. Bacteriol. 176: 531-534.
-
(1994)
J. Bacteriol
, vol.176
, pp. 531-534
-
-
Kajitani, M.1
Kato, A.2
Wada, A.3
Inokuchi, Y.4
Ishihama, A.5
-
9
-
-
0242380640
-
Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs
-
Le Derout, J., Folichon, M., Briani, F., Deho, G., Regnier, P., and Hajnsdorf, E. 2003. Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs. Nucleic Acids Res. 31: 4017-4023.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4017-4023
-
-
Le Derout, J.1
Folichon, M.2
Briani, F.3
Deho, G.4
Regnier, P.5
Hajnsdorf, E.6
-
10
-
-
3142564584
-
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
-
Lenz, D.H., Mok, K.C., Lilley, B.N., Kulkarni, R.V., Wingreen, N.S., and Bassler, B.L. 2004. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118: 69-82.
-
(2004)
Cell
, vol.118
, pp. 69-82
-
-
Lenz, D.H.1
Mok, K.C.2
Lilley, B.N.3
Kulkarni, R.V.4
Wingreen, N.S.5
Bassler, B.L.6
-
11
-
-
0028363358
-
Pattern recognition and classification of images of biological macromolecules using artificial neural networks
-
Marabini, R. and Carazo, J.M. 1994. Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys. J. 66: 1804-1814.
-
(1994)
Biophys. J
, vol.66
, pp. 1804-1814
-
-
Marabini, R.1
Carazo, J.M.2
-
12
-
-
0029945636
-
Xmipp: An image processing package for electron microscopy
-
Marabini, R., Masegosa, I.M., San Martin, C., Marco, S., Fernandez, J.J., de la Fraga, L.G., Vaquerizo, C., and Carazo, J.M. 1996. Xmipp: An image processing package for electron microscopy. J. Struct. Biol. 116: 237-240.
-
(1996)
J. Struct. Biol
, vol.116
, pp. 237-240
-
-
Marabini, R.1
Masegosa, I.M.2
San Martin, C.3
Marco, S.4
Fernandez, J.J.5
de la Fraga, L.G.6
Vaquerizo, C.7
Carazo, J.M.8
-
13
-
-
0038352109
-
Regulatory roles for small RNAs in bacteria
-
Masse, E., Majdalani, N., and Gottesman, S. 2003. Regulatory roles for small RNAs in bacteria. Curr. Opin. Microbiol. 6: 120-124.
-
(2003)
Curr. Opin. Microbiol
, vol.6
, pp. 120-124
-
-
Masse, E.1
Majdalani, N.2
Gottesman, S.3
-
14
-
-
16544365115
-
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
-
Mikulecky, P.J., Kaw, M.K., Brescia, C.C., Takach, J.C., Sledjeski, D.D., and Feig, A.L. 2004. Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat. Struct. Mol. Biol. 11: 1206-1214.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 1206-1214
-
-
Mikulecky, P.J.1
Kaw, M.K.2
Brescia, C.C.3
Takach, J.C.4
Sledjeski, D.D.5
Feig, A.L.6
-
15
-
-
7044285063
-
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
-
Mohanty, B.K., Maples, V.F., and Kushner, S.R. 2004. The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol. Microbiol. 54: 905-920.
-
(2004)
Mol. Microbiol
, vol.54
, pp. 905-920
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
16
-
-
0142240435
-
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
-
Moll, I., Afonyushkin, T., Vytvytska, O., Kaberdin, V.R., and Blasi, U. 2003. Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 9: 1308-1314.
-
(2003)
RNA
, vol.9
, pp. 1308-1314
-
-
Moll, I.1
Afonyushkin, T.2
Vytvytska, O.3
Kaberdin, V.R.4
Blasi, U.5
-
17
-
-
0002782867
-
HFq: A bacterial Sm-like protein that mediates RNA-RNA interaction
-
Moller, T., Franch, T., Hojrup, P., Keene, D., Bächinger, H.P., Brennan, R.G., and Valentin-Hansen, P. 2002. HFq: A bacterial Sm-like protein that mediates RNA-RNA interaction. Mol. Cell 9: 23-30.
-
(2002)
Mol. Cell
, vol.9
, pp. 23-30
-
-
Moller, T.1
Franch, T.2
Hojrup, P.3
Keene, D.4
Bächinger, H.P.5
Brennan, R.G.6
Valentin-Hansen, P.7
-
19
-
-
0344059121
-
Structure and assembly of an augmented Sm-like archaeal protein 14-mer
-
Mura, C., Phillips, M., Kozhukhovsky, A., and Eisenberg, D. 2003. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proc. Natl. Acad. Sci. 100: 4539-4544.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 4539-4544
-
-
Mura, C.1
Phillips, M.2
Kozhukhovsky, A.3
Eisenberg, D.4
-
20
-
-
21444437209
-
Structure of Pseudomonas aeruginosa Hfq protein
-
Nikulin, A., Stolboushkina, E., Perederina, A., Vassilieva, I., Blaesi, U., Moll, I., Kachalova, G., Yokoyama, S., Vassylyev, D., Garber, M., et al. 2005. Structure of Pseudomonas aeruginosa Hfq protein. Acta Crystallogr. D Biol. Crystallogr. 61: 141-146.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr
, vol.61
, pp. 141-146
-
-
Nikulin, A.1
Stolboushkina, E.2
Perederina, A.3
Vassilieva, I.4
Blaesi, U.5
Moll, I.6
Kachalova, G.7
Yokoyama, S.8
Vassylyev, D.9
Garber, M.10
-
21
-
-
0034729584
-
Sm-like proteins wRING the neck of mRNA
-
Pannone, B.K. and Wolin, S.L. 2000. Sm-like proteins wRING the neck of mRNA. Curr. Biol. 10: 478-481.
-
(2000)
Curr. Biol
, vol.10
, pp. 478-481
-
-
Pannone, B.K.1
Wolin, S.L.2
-
22
-
-
0036645689
-
Structures of the pleiotropic translational regulator HFq and an HFq-RNA complex: A bacterial Sm-like protein
-
Schumacher, M.A., Rearson, R.F., Moller, T., Valentin-Hansen, P., and Brennan, R.G. 2002. Structures of the pleiotropic translational regulator HFq and an HFq-RNA complex: A bacterial Sm-like protein. EMBO J. 21: 3546-3556.
-
(2002)
EMBO J
, vol.21
, pp. 3546-3556
-
-
Schumacher, M.A.1
Rearson, R.F.2
Moller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
23
-
-
0035834062
-
Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA
-
Sengupta, J., Agrawal, R.K., and Frank, J. 2001. Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proc. Natl. Acad. Sci. 98: 11991-11996.
-
(2001)
Proc. Natl. Acad. Sci
, vol.98
, pp. 11991-11996
-
-
Sengupta, J.1
Agrawal, R.K.2
Frank, J.3
-
24
-
-
0035104707
-
HFq is necessary for regulation by the untranslated RNA DsrA
-
Sledjeski, D.D., Whitman, C., and Zhang, A. 2001. HFq is necessary for regulation by the untranslated RNA DsrA. J. Bacteriol. 183: 1997-2005.
-
(2001)
J. Bacteriol
, vol.183
, pp. 1997-2005
-
-
Sledjeski, D.D.1
Whitman, C.2
Zhang, A.3
-
25
-
-
33645065354
-
Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa
-
Sonnleitner, E., Schuster, M., Sorger-Domenigg, T., Greenberg, E.P., and Blasi, U. 2006. Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa. Mol. Microbiol. 59: 1542-1558.
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1542-1558
-
-
Sonnleitner, E.1
Schuster, M.2
Sorger-Domenigg, T.3
Greenberg, E.P.4
Blasi, U.5
-
26
-
-
0037709369
-
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq
-
Sukhodolets, M.V. and Garges, S. 2003. Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry 42: 8022-8034.
-
(2003)
Biochemistry
, vol.42
, pp. 8022-8034
-
-
Sukhodolets, M.V.1
Garges, S.2
-
27
-
-
33746525428
-
Ribosomal protein S1 promotes transcriptional cycling
-
Sukhodolets, M.V., Garges, S., and Adhya, S. 2006. Ribosomal protein S1 promotes transcriptional cycling. RNA 12: 1505-1513.
-
(2006)
RNA
, vol.12
, pp. 1505-1513
-
-
Sukhodolets, M.V.1
Garges, S.2
Adhya, S.3
-
28
-
-
33645939935
-
Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites
-
Sun, X. and Wartell, R.M. 2006. Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites. Biochemistry 45: 4875-4887.
-
(2006)
Biochemistry
, vol.45
, pp. 4875-4887
-
-
Sun, X.1
Wartell, R.M.2
-
29
-
-
0036714801
-
Predicted structure and phyletic distribution of the RNA-binding protein Hfq
-
Sun, X., Zhulin, I., and Wartell, R.M. 2002. Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res. 30: 3662-3671.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3662-3671
-
-
Sun, X.1
Zhulin, I.2
Wartell, R.M.3
-
31
-
-
0030711638
-
Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12
-
Tsui, H.C.T., Feng, G., and Winkler, M.E. 1997. Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12. J. Bacteriol. 179: 7476-7487.
-
(1997)
J. Bacteriol
, vol.179
, pp. 7476-7487
-
-
Tsui, H.C.T.1
Feng, G.2
Winkler, M.E.3
-
32
-
-
0028243445
-
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
-
Tsui, H.C.T., Leung, H.C.E., and Winkler, M.E. 1994. Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol. Microbiol. 13: 35-49.
-
(1994)
Mol. Microbiol
, vol.13
, pp. 35-49
-
-
Tsui, H.C.T.1
Leung, H.C.E.2
Winkler, M.E.3
-
33
-
-
1642565815
-
The bacterial Sm-like protein Hfq: A key player in RNA transactions
-
Valentin-Hansen, P., Eriksen, M., and Udesen, C. 2004. The bacterial Sm-like protein Hfq: A key player in RNA transactions. Mol. Microbiol. 51: 1525-1533.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
34
-
-
0032564363
-
Host-factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability
-
Vytvytska, O., Jakobsen, J.S., Balcunate, G., Andersen, J.S., Baccarini, M., and von Gabain, A. 1998. Host-factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability. Proc. Natl. Acad. Sci. 95: 14118-14123.
-
(1998)
Proc. Natl. Acad. Sci
, vol.95
, pp. 14118-14123
-
-
Vytvytska, O.1
Jakobsen, J.S.2
Balcunate, G.3
Andersen, J.S.4
Baccarini, M.5
von Gabain, A.6
-
35
-
-
0037133946
-
Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
-
Wassarman, K.M. 2002. Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes. Cell 109: 141-144.
-
(2002)
Cell
, vol.109
, pp. 141-144
-
-
Wassarman, K.M.1
-
36
-
-
0035106688
-
A biochemical function for the Sm complex
-
Zhang, D., Abovich, N., and Rosbash, M. 2001. A biochemical function for the Sm complex. Mol. Cell 7: 319-329.
-
(2001)
Mol. Cell
, vol.7
, pp. 319-329
-
-
Zhang, D.1
Abovich, N.2
Rosbash, M.3
-
37
-
-
0036163624
-
The Sm-like HFq protein increases OxyS RNA interaction with target mRNAs
-
Zhang, A., Wassarman, K.M., Ortega, J., Steven, A.C., and Storz, G. 2002. The Sm-like HFq protein increases OxyS RNA interaction with target mRNAs. Mol. Cell 9: 11-22.
-
(2002)
Mol. Cell
, vol.9
, pp. 11-22
-
-
Zhang, A.1
Wassarman, K.M.2
Ortega, J.3
Steven, A.C.4
Storz, G.5
-
38
-
-
0043104253
-
The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system
-
Zylicz, M., LeBowitz, J.H., McMacken, R., and Georgopoulos, C. 1983. The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system. Proc. Natl. Acad. Sci. 80: 6431-6435.
-
(1983)
Proc. Natl. Acad. Sci
, vol.80
, pp. 6431-6435
-
-
Zylicz, M.1
LeBowitz, J.H.2
McMacken, R.3
Georgopoulos, C.4
|