-
2
-
-
33646387717
-
-
Jungwirth, P.,;, Tobias, D. J., Chem Rev 2006, 106, 1259.
-
(2006)
Chem Rev
, vol.106
, pp. 1259
-
-
Jungwirth, P.1
Tobias, D.J.2
-
3
-
-
3142652094
-
-
Roux, B.,;, Allen, T.,;, Berneche, S.,;, Im, W., Q Rev Biophys 2004, 30, 15.
-
(2004)
Q Rev Biophys
, vol.30
, pp. 15
-
-
Roux, B.1
Allen, T.2
Berneche, S.3
Im, W.4
-
5
-
-
1242290957
-
-
Liu, D.,;, Ma, G.,;, Levering, L. M.,;, Allen, H. C., J Phys Chem B 2004, 108, 2252.
-
(2004)
J Phys Chem B
, vol.108
, pp. 2252
-
-
Liu, D.1
Ma, G.2
Levering, L.M.3
Allen, H.C.4
-
6
-
-
7444246145
-
-
Petersen, P. B.,;, Saykally, R. J., Chem Phys Lett 2004, 397, 51.
-
(2004)
Chem Phys Lett
, vol.397
, pp. 51
-
-
Petersen, P.B.1
Saykally, R.J.2
-
7
-
-
2342475172
-
-
Raymond, E. A.,;, Richmond, G. L., J Phys Chem B 2004, 108, 5051.
-
(2004)
J Phys Chem B
, vol.108
, pp. 5051
-
-
Raymond, E.A.1
Richmond, G.L.2
-
8
-
-
53549100466
-
-
Warren, G. L.,;, Patel, S., J Phys Chem C 2008, 112, 7455.
-
(2008)
J Phys Chem C
, vol.112
, pp. 7455
-
-
Warren, G.L.1
Patel, S.2
-
9
-
-
4444272843
-
-
Vrbka, L.,;, Mucha, M.,;, Minofar, B.,;, Jungwirth, P.,;, Brown, E. C.,;, Tobias, D. J., Curr Opin Colloid Interface Sci 2004, 9, 67.
-
(2004)
Curr Opin Colloid Interface Sci
, vol.9
, pp. 67
-
-
Vrbka, L.1
Mucha, M.2
Minofar, B.3
Jungwirth, P.4
Brown, E.C.5
Tobias, D.J.6
-
10
-
-
33646430310
-
-
Chang, T.,;, Dang, L. X., Chem Rev 2006, 106, 1305.
-
(2006)
Chem Rev
, vol.106
, pp. 1305
-
-
Chang, T.1
Dang, L.X.2
-
11
-
-
38549149267
-
-
Eggimann, B. L.,;, Siepmann, J. I., J Phys Chem C 2008, 112, 210.
-
(2008)
J Phys Chem C
, vol.112
, pp. 210
-
-
Eggimann, B.L.1
Siepmann, J.I.2
-
12
-
-
22244482712
-
-
Perera, L.,;, Berkowitz, M. L., J Chem Phys 1991, 95, 1954.
-
(1991)
J Chem Phys
, vol.95
, pp. 1954
-
-
Perera, L.1
Berkowitz, M.L.2
-
13
-
-
0000042113
-
-
Dang, L. X.,;, Rice, J. E.,;, Caldwell, J.,;, Kollman, P. A., J Am Chem Soc 1991, 113, 2481.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 2481
-
-
Dang, L.X.1
Rice, J.E.2
Caldwell, J.3
Kollman, P.A.4
-
15
-
-
72449172505
-
-
Levin, Y.,;, dos Santos, A. P.,;, Diehl, A., Phys Rev Lett 2009, 103, 257802.
-
(2009)
Phys Rev Lett
, vol.103
, pp. 257802
-
-
Levin, Y.1
Dos Santos, A.P.2
Diehl, A.3
-
16
-
-
33846339776
-
-
Yang, J.,;, Wang, Y.,;, Chen, Y., J Comput Phys 2006, 221, 799.
-
(2006)
J Comput Phys
, vol.221
, pp. 799
-
-
Yang, J.1
Wang, Y.2
Chen, Y.3
-
17
-
-
35948963714
-
-
Stone, J. E.,;, Phillips, J. C.,;, Freddolino, P. L.,;, Hardy, D. J.,;, Trabuco, L. G.,;, Schulten, K., J Comput Chem 2007, 28, 2618.
-
(2007)
J Comput Chem
, vol.28
, pp. 2618
-
-
Stone, J.E.1
Phillips, J.C.2
Freddolino, P.L.3
Hardy, D.J.4
Trabuco, L.G.5
Schulten, K.6
-
18
-
-
41249087856
-
-
Anderson, J. A.,;, Lorenz, C. D.,;, Travesset, A., J Comput Phys 2008, 227, 5342.
-
(2008)
J Comput Phys
, vol.227
, pp. 5342
-
-
Anderson, J.A.1
Lorenz, C.D.2
Travesset, A.3
-
19
-
-
45849099839
-
-
van Meel, J. A.,;, Arnold, A.,;, Frenkel, D.,;, Portegies Zwart, S. F.,;, Belleman, R. G., Mol Simul 2008, 34, 259.
-
(2008)
Mol Simul
, vol.34
, pp. 259
-
-
Van Meel, J.A.1
Arnold, A.2
Frenkel, D.3
Portegies Zwart, S.F.4
Belleman, R.G.5
-
20
-
-
47149107224
-
-
Monticelli, L.,;, Sorin, E. J.,;, Tieleman, D. P.,;, Pande, V. S.,;, Colombo, G., J Comput Chem 2008, 29, 1740.
-
(2008)
J Comput Chem
, vol.29
, pp. 1740
-
-
Monticelli, L.1
Sorin, E.J.2
Tieleman, D.P.3
Pande, V.S.4
Colombo, G.5
-
21
-
-
0029878720
-
-
Humphrey, W.,;, Dalke, A.,;, Schulten, K., J Mol Graphics 1996, 14, 33.
-
(1996)
J Mol Graphics
, vol.14
, pp. 33
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
22
-
-
64649105762
-
-
Friedrichs, M. S.,;, Eastman, P.,;, Vaidyanathan, V.,;, Houston, M.,;, LeGrand, S.,;, Beberg, A. L.,;, Ensign, D. L.,;, Bruns, C. M.,;, Pande, V. S., J Comput Chem 2009, 30, 864.
-
(2009)
J Comput Chem
, vol.30
, pp. 864
-
-
Friedrichs, M.S.1
Eastman, P.2
Vaidyanathan, V.3
Houston, M.4
Legrand, S.5
Beberg, A.L.6
Ensign, D.L.7
Bruns, C.M.8
Pande, V.S.9
-
23
-
-
76149136021
-
-
Voelz, V. A.,;, Bowman, G. R.,;, Beauchamp, K.,;, Pande, V. S., J Am Chem Soc 2010, 132, 1526.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 1526
-
-
Voelz, V.A.1
Bowman, G.R.2
Beauchamp, K.3
Pande, V.S.4
-
24
-
-
73349117827
-
-
Harvey, M. J.,;, Fabritiis, G. D., J Chem Theory Comput 2009, 5, 2371.
-
(2009)
J Chem Theory Comput
, vol.5
, pp. 2371
-
-
Harvey, M.J.1
Fabritiis, G.D.2
-
25
-
-
65749098856
-
-
NVIDIA
-
NVIDIA, NVIDIA CUDA Programming Guide 2.0, Available at: http://www.nvidia.com/object/cuda-develop.html, 2008.
-
(2008)
NVIDIA CUDA Programming Guide 2.0
-
-
-
26
-
-
68249094306
-
-
Davis, J. E.,;, Ozsoy, A.,;, Patel, S.,;, Taufer, M., Lect Notes Bioinf 2009, 5462, 176.
-
(2009)
Lect Notes Bioinf
, vol.5462
, pp. 176
-
-
Davis, J.E.1
Ozsoy, A.2
Patel, S.3
Taufer, M.4
-
27
-
-
78650450852
-
GPU Gems 3
-
In; Nguyen, H., Ed.;: Boston,; Chapter 31
-
Nyland, L.,;, Harris, M.,;, Prins, J., In GPU Gems 3;, Nguyen, H., Ed.; Addison-Wesley: Boston, 2008; Chapter 31, pp. 677-695.
-
(2008)
Addison-Wesley
, pp. 677-695
-
-
Nyland, L.1
Harris, M.2
Prins, J.3
-
28
-
-
84986512474
-
-
Brooks, B. R.,;, Bruccoleri, R. E.,;, Olafson, B. D.,;, States, D. J.,;, Swaminathan, S.,;, Karplus, M., J Comput Chem 1983, 4, 187.
-
(1983)
J Comput Chem
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
30
-
-
30744437399
-
-
Wu, Y.,;, Tepper, H. L.,;, Voth, G., J Chem Phys 2006, 124, 024503.
-
(2006)
J Chem Phys
, vol.124
, pp. 024503
-
-
Wu, Y.1
Tepper, H.L.2
Voth, G.3
-
32
-
-
0001158363
-
-
Barker, J. A.,;, Watts, R. O., Mol Phys 1973, 23, 789.
-
(1973)
Mol Phys
, vol.23
, pp. 789
-
-
Barker, J.A.1
Watts, R.O.2
-
33
-
-
0001786236
-
-
deLeeuw, S. W.,;, Perram, J. W.,;, Smith, E. R., Proc R Soc London Ser A 1980, 373, 27.
-
(1980)
Proc R Soc London ser A
, vol.373
, pp. 27
-
-
Deleeuw, S.W.1
Perram, J.W.2
Smith, E.R.3
-
34
-
-
0028766513
-
-
Hummer, G.,;, Soumpasis, D. M.,;, Neumann, M., J Phys: Condens Matter 1994, 6, A141.
-
(1994)
J Phys: Condens Matter
, vol.6
-
-
Hummer, G.1
Soumpasis, D.M.2
Neumann, M.3
-
35
-
-
0242385345
-
-
Ghosh, T.,;, Garde, S.,;, Garcia, A. E., Biophys J 2003, 85, 3187.
-
(2003)
Biophys J
, vol.85
, pp. 3187
-
-
Ghosh, T.1
Garde, S.2
Garcia, A.E.3
-
36
-
-
33644879448
-
-
Lamoureux, G.,;, Roux, B., J Phys Chem B 2006, 110, 3308.
-
(2006)
J Phys Chem B
, vol.110
, pp. 3308
-
-
Lamoureux, G.1
Roux, B.2
-
38
-
-
0033220726
-
-
Ignaczak, A.,;, Gomes, J. A. N. F.,;, Cordeiro, M. N. D. S., Electrochimica Acta 1999, 45, 659.
-
(1999)
Electrochimica Acta
, vol.45
, pp. 659
-
-
Ignaczak, A.1
Gomes, J.A.N.F.2
Cordeiro, M.N.D.S.3
-
39
-
-
33645934660
-
-
Carnie, S. L.,;, Patey, G. N., Mol Phys 1982, 47, 1129.
-
(1982)
Mol Phys
, vol.47
, pp. 1129
-
-
Carnie, S.L.1
Patey, G.N.2
-
40
-
-
0000782351
-
-
Chen, B.,;, Xing, J.,;, Siepmann, J. I., J Phys Chem B 2000, 104, 2391.
-
(2000)
J Phys Chem B
, vol.104
, pp. 2391
-
-
Chen, B.1
Xing, J.2
Siepmann, J.I.3
-
41
-
-
0142057630
-
-
Silvestrelli, P. L.,;, Parrinello, M., J Chem Phys 1999, 111, 3572.
-
(1999)
J Chem Phys
, vol.111
, pp. 3572
-
-
Silvestrelli, P.L.1
Parrinello, M.2
-
42
-
-
0001196127
-
-
Watanabe, K.,;, Klein, M. L., Chem Phys 1989, 131, 157.
-
(1989)
Chem Phys
, vol.131
, pp. 157
-
-
Watanabe, K.1
Klein, M.L.2
-
44
-
-
33745786556
-
-
Ismail, A. E.,;, Grest, G. S.,;, Stevens, M. S., J Chem Phys 2006, 125, 014702.
-
(2006)
J Chem Phys
, vol.125
, pp. 014702
-
-
Ismail, A.E.1
Grest, G.S.2
Stevens, M.S.3
-
45
-
-
84953649725
-
-
Vargaftik, N. B.,;, Volkov, B. N.,;, Voljak, L. D., J Phys Chem Ref Data 1983, 12, 817.
-
(1983)
J Phys Chem Ref Data
, vol.12
, pp. 817
-
-
Vargaftik, N.B.1
Volkov, B.N.2
Voljak, L.D.3
-
46
-
-
55649109070
-
-
Addison-Wesley Professional.
-
Nguyen, H., GPU Gems 3; Addison-Wesley Professional, 2007.
-
(2007)
GPU Gems 3
-
-
Nguyen, H.1
-
48
-
-
0030670359
-
-
Braxenthaler, M.,;, Unger, R.,;, Auerbach, D.,;, Given, J.,;, Moult, J., Proteins 1997, 29, 417.
-
(1997)
Proteins
, vol.29
, pp. 417
-
-
Braxenthaler, M.1
Unger, R.2
Auerbach, D.3
Given, J.4
Moult, J.5
-
49
-
-
77954020081
-
Improving Numerical Reproducibility and Stability in Large-Scale Numerical Simulations on GPUs
-
Atlanta, Georgia, USA, April
-
Taufer, M.,;, Padron, O.,;, Saponaro, P.,;, Patel, S., Improving Numerical Reproducibility and Stability in Large-Scale Numerical Simulations on GPUs. Proceedings of the IEEE/ACM International Parallel and Distributed Processing Symposium (IPDPS); Atlanta, Georgia, USA, April 19-23, 2010.
-
(2010)
Proceedings of the IEEE/ACM International Parallel and Distributed Processing Symposium (IPDPS)
, pp. 19-23
-
-
Taufer, M.1
Padron, O.2
Saponaro, P.3
Patel, S.4
-
50
-
-
0033702231
-
Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications
-
Santa Fe, New Mexico, USA, May
-
He, Y.,;, Ding, C. H. Q., Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications. Proceedings of the 14th International Conference on Supercomputing (ICS); Santa Fe, New Mexico, USA, May 8-11, 2000.
-
(2000)
Proceedings of the 14th International Conference on Supercomputing (ICS)
, pp. 8-11
-
-
He, Y.1
Ding, C.H.Q.2
-
51
-
-
35948963714
-
-
Stone, J.,;, Phillips, J.,;, Freddolino, P.,;, Hardy, D.,;, Trabuco, L.,;, Schulten, K., J Comput Chem 2007, 28, 2618.
-
(2007)
J Comput Chem
, vol.28
, pp. 2618
-
-
Stone, J.1
Phillips, J.2
Freddolino, P.3
Hardy, D.4
Trabuco, L.5
Schulten, K.6
-
52
-
-
41249087856
-
-
Anderson, J. A.,;, Lorenz, C. D.,;, Travesset, A., J Comput Phys 2008, 227, 5342.
-
(2008)
J Comput Phys
, vol.227
, pp. 5342
-
-
Anderson, J.A.1
Lorenz, C.D.2
Travesset, A.3
-
53
-
-
64649105762
-
-
Friedrichs, M. S.,;, Eastman, P.,;, Vaidyanathan, V.,;, Houston, M.,;, LeGrand, S.,;, Beberg, A. L.,;, Ensign, D. L.,;, Bruns, C. M.,;, Pande, V. S., J Comput Chem 2009, 30, 864.
-
(2009)
J Comput Chem
, vol.30
, pp. 864
-
-
Friedrichs, M.S.1
Eastman, P.2
Vaidyanathan, V.3
Houston, M.4
Legrand, S.5
Beberg, A.L.6
Ensign, D.L.7
Bruns, C.M.8
Pande, V.S.9
|