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Volumn 28, Issue 1, 2011, Pages 21-23

GC3 of genes can be used as a proxy for isochore base composition: A reply to Elhaik et al.

Author keywords

chromatin; GC level; GC3; genome composition; isochores; long range correlations

Indexed keywords

DNA;

EID: 78650460796     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq222     Document Type: Review
Times cited : (14)

References (26)
  • 2
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstandings about isochores
    • Bernardi G. 2001. Misunderstandings about isochores. Gene 276:3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernardi, G.1
  • 6
    • 0035802430 scopus 로고    scopus 로고
    • Compositional heterogeneity within and among isochores in mammalian genomes: I. CsCl and sequence analyses
    • DOI 10.1016/S0378-1119(01)00667-9, PII S0378111901006679
    • Clay O, Carels N, Douady C, Macaya G, Bernardi G. 2001. Compositional heterogeneity within and among isochores in mammalian genomes. I. CsCl and sequence analyses. Gene 276:15-24. (Pubitemid 32925255)
    • (2001) Gene , vol.276 , Issue.1-2 , pp. 15-24
    • Clay, O.1    Carels, N.2    Douady, C.3    Macaya, G.4    Bernardi, G.5
  • 7
    • 34547493467 scopus 로고    scopus 로고
    • Isochore patterns and gene distributions in fish genomes
    • Costantini M, Auletta F, Bernardi G. 2007. Isochore patterns and gene distributions in fish genomes. Genomics 90:364-371.
    • (2007) Genomics , vol.90 , pp. 364-371
    • Costantini, M.1    Auletta, F.2    Bernardi, G.3
  • 8
    • 39249085365 scopus 로고    scopus 로고
    • Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes
    • Costantini M, Bernardi G. 2008. Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes. Gene 410:241-248.
    • (2008) Gene , vol.410 , pp. 241-248
    • Costantini, M.1    Bernardi, G.2
  • 9
    • 65549134856 scopus 로고    scopus 로고
    • The evolution of isochore patterns in vertebrate genomes
    • Costantini M, Cammarano R, Bernardi G. 2009. The evolution of isochore patterns in vertebrate genomes. BMC Genomics. 10:146.
    • (2009) BMC Genomics , vol.10 , pp. 146
    • Costantini, M.1    Cammarano, R.2    Bernardi, G.3
  • 11
    • 34548021894 scopus 로고    scopus 로고
    • Isochore pattern and gene distribution in the chicken genome
    • Costantini M, Di Filippo M, Auletta F, Bernardi G. 2007. Isochore pattern and gene distribution in the chicken genome. Gene 400:9-15.
    • (2007) Gene , vol.400 , pp. 9-15
    • Costantini, M.1    Di Filippo, M.2    Auletta, F.3    Bernardi, G.4
  • 12
    • 0002810030 scopus 로고
    • Long-range dependence: A review
    • David HA, David HT, editors Aimes (IA): Iowa State Univ Press
    • Cox DR. 1984. Long-range dependence: a review. In: David HA, David HT, editors. Statistics: an appraisal. Aimes (IA): Iowa State Univ Press. p. 55-74.
    • (1984) Statistics: An Appraisal , pp. 55-74
    • Cox, D.R.1
  • 13
    • 0019470162 scopus 로고
    • The major components of the mouse and human genomes I. Preparation, basic properties and compositional heterogeneity
    • Cuny G, Soriano P, Macaya G, Bernardi G. 1981. The major components of the mouse and human genomes. I. Preparation, basic properties and compositional heterogeneity. Eur J Biochem. 115:227-233.
    • (1981) Eur J Biochem , vol.115 , pp. 227-233
    • Cuny, G.1    Soriano, P.2    MacAya, G.3    Bernardi, G.4
  • 14
    • 77951536244 scopus 로고    scopus 로고
    • Comparative testing of DNA segmentation algorithms using benchmark simulations
    • Elhaik E, Graur D, Josic K. 2010. Comparative testing of DNA segmentation algorithms using benchmark simulations. Mol Biol Evol. 27:1015-1024.
    • (2010) Mol Biol Evol , vol.27 , pp. 1015-1024
    • Elhaik, E.1    Graur, D.2    Josic, K.3
  • 15
    • 67749124224 scopus 로고    scopus 로고
    • Can GC content at third-codon positions be used as a proxy for isochore composition?
    • Elhaik E, Landan G, Graur D. 2009. Can GC content at third-codon positions be used as a proxy for isochore composition? Mol Biol Evol. 26:1829-1833.
    • (2009) Mol Biol Evol , vol.26 , pp. 1829-1833
    • Elhaik, E.1    Landan, G.2    Graur, D.3
  • 16
    • 33646145936 scopus 로고    scopus 로고
    • Do transposable elements really contribute to proteomes?
    • Gotea V, Maka1owski W. 2006. Do transposable elements really contribute to proteomes? Trends Genet. 22:260-267.
    • (2006) Trends Genet , vol.22 , pp. 260-267
    • Gotea, V.1    Makalowski, W.2
  • 18
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • 255 co-authors
    • Lander ES, Linton LM, Birren B, et al. (255 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 19
    • 0017173987 scopus 로고
    • An approach to the organization of eukaryotic genomes at a macromolecular level
    • Macaya G, Thiery JP, Bernardi G. 1976. An approach to the organization of eukaryotic genomes at a macromolecular level. J Mol Biol. 108:237-254.
    • (1976) J Mol Biol , vol.108 , pp. 237-254
    • MacAya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 20
    • 0001172501 scopus 로고
    • Equilibrium sedimentation of macromolecules in density gradients
    • Meselson M, Stahl FW, Vinograd J. 1957. Equilibrium sedimentation of macromolecules in density gradients. Proc Natl Acad Sci USA. 43:581-588.
    • (1957) Proc Natl Acad Sci USA , vol.43 , pp. 581-588
    • Meselson, M.1    Stahl, F.W.2    Vinograd, J.3
  • 22
    • 0037125207 scopus 로고    scopus 로고
    • Transposable elements encoding functional proteins: Pitfalls in unprocessed genomic data?
    • Pavĺcek A, Clay O, Bernardi G. 2002. Transposable elements encoding functional proteins: pitfalls in unprocessed genomic data? FEBS Lett. 523:252-253.
    • (2002) FEBS Lett , vol.523 , pp. 252-253
    • Pavĺcek, A.1    Clay, O.2    Bernardi, G.3
  • 24
    • 67650064594 scopus 로고    scopus 로고
    • The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    • 49 co-authors
    • Pruitt KD, Harrow J, Harte RA, et al. (49 co-authors). 2009. The consensus coding sequence (CCDS) project: identifying a common protein-coding gene set for the human and mouse genomes. Genome Res. 19:1316-1323.
    • (2009) Genome Res , vol.19 , pp. 1316-1323
    • Pruitt, K.D.1    Harrow, J.2    Harte, R.A.3
  • 25
    • 77951116072 scopus 로고    scopus 로고
    • CpG islands influence chromatin structure via the CpG-binding protein Cfp1
    • 13 co-authors
    • Thomson JP, Skene PJ, Selfridge J, et al. (13 co-authors). 2010. CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464:1082-1086.
    • (2010) Nature , vol.464 , pp. 1082-1086
    • Thomson, J.P.1    Skene, P.J.2    Selfridge, J.3
  • 26
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak S, Clay O, Bernardi G. 1996. The gene distribution of the human genome. Gene 174:95-102.
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.