Genetic variation in DNA repair pathway genes and melanoma risk

DNA Repair

Volumn 10, Issue 1, 2011, Pages 111-116

  Zhang, Mingfeng ^a,b   Qureshi, Abrar A ^a   Guo, Qun ^a   Han, Jiali ^a,c  

^a BRIGHAM AND WOMEN S HOSPITAL   (United States)

^b NANJING MEDICAL UNIVERSITY   (China)

^c HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

DNA repair; Etiology; Melanoma; Polymorphism

Indexed keywords

NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 1;

ADULT; ARTICLE; CANCER RISK; CASE CONTROL STUDY; CONTROLLED STUDY; DNA REPAIR; DNA REPLICATION; FEMALE; FOLLOW UP; GENE EXPRESSION; GENE LINKAGE DISEQUILIBRIUM; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC HETEROGENEITY; GENETIC VARIABILITY; GENOTYPE; HEALTH PRACTITIONER; HETEROZYGOSITY; HUMAN; MAJOR CLINICAL STUDY; MALE; MELANOMA; OUTCOME ASSESSMENT; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SUN EXPOSURE;

ADULT; AGED; CASE-CONTROL STUDIES; CELL CYCLE PROTEINS; CONFIDENCE INTERVALS; DNA REPAIR; DNA, NEOPLASM; FEMALE; FOLLOW-UP STUDIES; GENETIC PREDISPOSITION TO DISEASE; GENOTYPE; HEAD AND NECK NEOPLASMS; HUMANS; LINKAGE DISEQUILIBRIUM; MALE; MELANOMA; MIDDLE AGED; POLY(ADP-RIBOSE) POLYMERASES; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEIN-SERINE-THREONINE KINASES; RISK FACTORS; SKIN NEOPLASMS; SUNLIGHT; UNITED STATES;

EID: 78650419157     PISSN: 15687864     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dnarep.2010.08.005     Document Type: Article

References (35)

1. Society A.C. Cancer Facts Figures 2009.
2. Armstrong B.K., Kricker A., English D.R. Sun exposure and skin cancer. Australas. J. Dermatol. 1997, 38(Suppl. 1):S1-S6.
3. English D.R., Armstrong B.K., Kricker A., Fleming C. Sunlight and cancer. Cancer Causes Control 1997, 8:271-283.
4. Ravanat J.L., Douki T., Cadet J. Direct and indirect effects of UV radiation on DNA and its components. J. Photochem. Photobiol. B 2001, 63:88-102.
5. Wei Q., Lee J.E., Gershenwald J.E., Ross M.I., Mansfield P.F., Strom S.S., Wang L.E., Guo Z., Qiao Y., Amos C.I., Spitz M.R., Duvic M. Repair of UV light-induced DNA damage and risk of cutaneous malignant melanoma. J. Natl. Cancer Inst. 2003, 95:308-315.
6. Kraemer K.H., Lee M.M., Scotto J. Xeroderma pigmentosum. Cutaneous, ocular, and neurologic abnormalities in 830 published cases. Arch. Dermatol. 1987, 123:241-250.
7. Mohrenweiser H.W., Jones I.M. Variation in DNA repair is a factor in cancer susceptibility: a paradigm for the promises and perils of individual and population risk estimation?. Mutat. Res. 1998, 400:15-24.
8. Mohrenweiser H.W., Jones I.M. Uncertainty of response to ionizing radiation due to genotype: potential role for variation in DNA repair genes. Radiat. Res. 2000, 154:722-723. discussion 723-724.
9. Mohrenweiser H.W., Xi T., Vazquez-Matias J., Jones I.M. Identification of 127 amino acid substitution variants in screening 37 DNA repair genes in humans. Cancer Epidemiol. Biomarkers Prev. 2002, 11:1054-1064.
10. Spitz M.R., Wei Q., Dong Q., Amos C.I., Wu X. Genetic susceptibility to lung cancer: the role of DNA damage and repair. Cancer Epidemiol. Biomarkers Prev. 2003, 12:689-698.
11. Haiman C.A., Hsu C., de Bakker P.I., Frasco M., Sheng X., Van Den Berg D., Casagrande J.T., Kolonel L.N., Le Marchand L., Hankinson S.E., Han J., Dunning A.M., Pooley K.A., Freedman M.L., Hunter D.J., Wu A.H., Stram D.O., Henderson B.E. Comprehensive association testing of common genetic variation in DNA repair pathway genes in relationship with breast cancer risk in multiple populations. Hum. Mol. Genet. 2008, 17:825-834.
12. Han J., Haiman C., Niu T., Guo Q., Cox D.G., Willett W.C., Hankinson S.E., Hunter D.J. Genetic variation in DNA repair pathway genes and premenopausal breast cancer risk. Breast Cancer Res. Treat. 2009, 115:613-622.
13. Wood R.D., Mitchell M., Sgouros J., Lindahl T. Human DNA repair genes. Science 2001, 291:1284-1289.
14. Han J., Kraft P., Nan H., Guo Q., Chen C., Qureshi A., Hankinson S.E., Hu F.B., Duffy D.L., Zhao Z.Z., Martin N.G., Montgomery G.W., Hayward N.K., Thomas G., Hoover R.N., Chanock S., Hunter D.J. A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. PLoS Genet. 2008, 4:e1000074.
15. Nan H., Kraft P., Qureshi A.A., Guo Q., Chen C., Hankinson S.E., Hu F.B., Thomas G., Hoover R.N., Chanock S., Hunter D.J., Han J. Genome-wide association study of tanning phenotype in a population of European ancestry. J. Invest. Dermatol. 2009, 129:2250-2257.
16. de Bakker P.I., Yelensky R., Pe'er I., Gabriel S.B., Daly M.J., Altshuler D. Efficiency and power in genetic association studies. Nat. Genet. 2005, 37:1217-1223.
17. Carlson C.S., Eberle M.A., Rieder M.J., Yi Q., Kruglyak L., Nickerson D.A. Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am. J. Hum. Genet. 2004, 74:106-120.
18. Stram D.O., Leigh Pearce C., Bretsky P., Freedman M., Hirschhorn J.N., Altshuler D., Kolonel L.N., Henderson B.E., Thomas D.C. Modeling and E-M estimation of haplotype-specific relative risks from genotype data for a case-control study of unrelated individuals. Hum. Hered. 2003, 55:179-190.
19. Kolonel L.N., Henderson B.E., Hankin J.H., Nomura A.M., Wilkens L.R., Pike M.C., Stram D.O., Monroe K.R., Earle M.E., Nagamine F.S. A multiethnic cohort in Hawaii and Los Angeles: baseline characteristics. Am. J. Epidemiol. 2000, 151:346-357.
20. Mueller J.C., Lohmussaar E., Magi R., Remm M., Bettecken T., Lichtner P., Biskup S., Illig T., Pfeufer A., Luedemann J., Schreiber S., Pramstaller P., Pichler I., Romeo G., Gaddi A., Testa A., Wichmann H.E., Metspalu A., Meitinger T. Linkage disequilibrium patterns and tagSNP transferability among European populations. Am. J. Hum. Genet. 2005, 76:387-398.
21. Li J., Ji L. Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 2005, 95:221-227.
22. Nyholt D.R. A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Am. J. Hum. Genet. 2004, 74:765-769.
23. Han J., Kraft P., Colditz G.A., Wong J., Hunter D.J. Melanocortin 1 receptor variants and skin cancer risk. Int. J. Cancer 2006, 119:1976-1984.
24. Memisoglu A., Samson L. Base excision repair in yeast and mammals. Mutat. Res. 2000, 451:39-51.
25. Wacholder S., Chanock S., Garcia-Closas M., El Ghormli L., Rothman N. Assessing the probability that a positive report is false: an approach for molecular epidemiology studies. J. Natl. Cancer Inst. 2004, 96:434-442.
26. Dantzer F., Ame J.C., Schreiber V., Nakamura J., Menissier-de Murcia J., de Murcia G. Poly(ADP-ribose) polymerase-1 activation during DNA damage and repair. Methods Enzymol. 2006, 409:493-510.
27. Oei S.L., Keil C., Ziegler M. Poly(ADP-ribosylation) and genomic stability. Biochem. Cell Biol. 2005, 83:263-269.
28. Leppard J.B., Dong Z., Mackey Z.B., Tomkinson A.E. Physical and functional interaction between DNA ligase IIIalpha and poly(ADP-Ribose) polymerase 1 in DNA single-strand break repair. Mol. Cell. Biol. 2003, 23:5919-5927.
29. Lilyestrom W., van der Woerd M.J., Clark N., Luger K. Structural and biophysical studies of human PARP-1 in complex with damaged DNA. J. Mol. Biol. 2010, 395:983-994.
30. Hu J.J., Roush G.C., Dubin N., Berwick M., Roses D.F., Harris M.N. Poly(ADP-ribose) polymerase in human breast cancer: a case-control analysis. Pharmacogenetics 1997, 7:309-316.
31. Rajaee-Behbahani N., Schmezer P., Ramroth H., Burkle A., Bartsch H., Dietz A., Becher H. Reduced poly(ADP-ribosyl)ation in lymphocytes of laryngeal cancer patients: results of a case-control study. Int. J. Cancer 2002, 98:780-784.
32. Lockett K.L., Hall M.C., Xu J., Zheng S.L., Berwick M., Chuang S.C., Clark P.E., Cramer S.D., Lohman K., Hu J.J. The ADPRT V762A genetic variant contributes to prostate cancer susceptibility and deficient enzyme function. Cancer Res. 2004, 64:6344-6348.
33. Figueroa J.D., Malats N., Real F.X., Silverman D., Kogevinas M., Chanock S., Welch R., Dosemeci M., Tardon A., Serra C., Carrato A., Garcia-Closas R., Castano-Vinyals G., Rothman N., Garcia-Closas M. Genetic variation in the base excision repair pathway and bladder cancer risk. Hum. Genet. 2007, 121:233-242.
34. Li C., Hu Z., Lu J., Liu Z., Wang L.E., El-Naggar A.K., Sturgis E.M., Spitz M.R., Wei Q. Genetic polymorphisms in DNA base-excision repair genes ADPRT, XRCC1, and APE1 and the risk of squamous cell carcinoma of the head and neck. Cancer 2007, 110:867-875.
35. Zhang Q., Li Y., Li X., Zhou W., Shi B., Chen H., Yuan W. PARP-1 Val762Ala polymorphism, CagA+ H. pylori infection and risk for gastric cancer in Han Chinese population. Mol. Biol. Rep. 2009, 36:1461-1467.