-
1
-
-
33746930864
-
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
-
17.
-
Keller, A., Eng, J., Zhang, N., Li, X. J., Aebersold, R., A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 2005, 1, 17.
-
(2005)
Mol. Syst. Biol.
, vol.1
-
-
Keller, A.1
Eng, J.2
Zhang, N.3
Li, X.J.4
Aebersold, R.5
-
2
-
-
51749091106
-
The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data
-
Ramos, H., Shannon, P., Aebersold, R., The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data. Bioinformatics 2008, 24, 2110-2111.
-
(2008)
Bioinformatics
, vol.24
, pp. 2110-2111
-
-
Ramos, H.1
Shannon, P.2
Aebersold, R.3
-
3
-
-
33646743767
-
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
-
Shannon, P. T., Reiss, D. J., Bonneau, R., Baliga, N. S., The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 2006, 7, 176.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 176
-
-
Shannon, P.T.1
Reiss, D.J.2
Bonneau, R.3
Baliga, N.S.4
-
4
-
-
47949118940
-
Systems biology driven software design for the research enterprise
-
Boyle, J., Cavnor, C., Killcoyne, S., Shmulevich, I., Systems biology driven software design for the research enterprise. BMC Bioinformatics 2008, 9, 295.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 295
-
-
Boyle, J.1
Cavnor, C.2
Killcoyne, S.3
Shmulevich, I.4
-
5
-
-
75549085083
-
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology
-
Prasad, T. S., Kandasamy, K., Pandey, A., Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods Mol. Biol. 2009, 577, 67-79.
-
(2009)
Methods Mol. Biol.
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
6
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark, C., Breitkreutz, B. J., Reguly, T., Boucher, L. et al., BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 2006, 34, D535-D539.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
-
7
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
Falcon, S., Gentleman, R., Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23, 257-258.
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
8
-
-
38349107287
-
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
-
Bare, J. C., Shannon, P. T., Schmid, A. K., Baliga, N. S., The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinformatics 2007, 8, 456.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 456
-
-
Bare, J.C.1
Shannon, P.T.2
Schmid, A.K.3
Baliga, N.S.4
-
9
-
-
20144381803
-
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
-
Desiere, F., Deutsch, E. W., Nesvizhskii, A. I., Mallick, P. et al., Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol. 2005, 6, R9.
-
(2005)
Genome Biol.
, vol.6
-
-
Desiere, F.1
Deutsch, E.W.2
Nesvizhskii, A.I.3
Mallick, P.4
-
10
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M., Araki, M., Goto, S., Hattori, M. et al., KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008, 36, D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
-
11
-
-
58149193234
-
STRING 8 - a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L. J., Kuhn, M., Stark, M., Chaffron, S. et al., STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009, 37, D412-D416.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
-
12
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J. et al., DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4, P3.
-
(2003)
Genome Biol.
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
-
13
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed, A. I., Sharov, V., White, J., Li, J. et al., TM4: a free, open-source system for microarray data management and analysis. Biotechniques 2003, 34, 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
-
14
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S. et al., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13, 2498-2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
-
15
-
-
77649252269
-
Visualization of omics data for systems biology
-
Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A. et al., Visualization of omics data for systems biology. Nat. Methods 2010, 7, S56-S68.
-
(2010)
Nat. Methods
, vol.7
-
-
Gehlenborg, N.1
O'Donoghue, S.I.2
Baliga, N.S.3
Goesmann, A.4
-
16
-
-
2942609149
-
VisANT: an online visualization and analysis tool for biological interaction data
-
Hu, Z., Mellor, J., Wu, J., DeLisi, C., VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinformatics 2004, 5, 17.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 17
-
-
Hu, Z.1
Mellor, J.2
Wu, J.3
DeLisi, C.4
-
17
-
-
74049130341
-
Graphle: interactive exploration of large, dense graphs
-
Huttenhower, C., Mehmood, S. O., Troyanskaya, O. G., Graphle: interactive exploration of large, dense graphs. BMC Bioinformatics 2009, 10, 417.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 417
-
-
Huttenhower, C.1
Mehmood, S.O.2
Troyanskaya, O.G.3
-
18
-
-
62149110095
-
Corra: computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
-
Brusniak, M. Y., Bodenmiller, B., Campbell, D., Cooke, K. et al., Corra: computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. BMC Bioinformatics 2008, 9, 542.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 542
-
-
Brusniak, M.Y.1
Bodenmiller, B.2
Campbell, D.3
Cooke, K.4
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