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Volumn 11, Issue 1, 2011, Pages 154-158

The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage

Author keywords

Bioinformatics; Biological inference; Gene ontology; Interaction networks; Software analysis

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER NETWORK; COMPUTER PROGRAM; PRIORITY JOURNAL; PROTEOMICS;

EID: 78650412802     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000459     Document Type: Article
Times cited : (9)

References (18)
  • 1
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • 17.
    • Keller, A., Eng, J., Zhang, N., Li, X. J., Aebersold, R., A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 2005, 1, 17.
    • (2005) Mol. Syst. Biol. , vol.1
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 2
    • 51749091106 scopus 로고    scopus 로고
    • The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data
    • Ramos, H., Shannon, P., Aebersold, R., The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data. Bioinformatics 2008, 24, 2110-2111.
    • (2008) Bioinformatics , vol.24 , pp. 2110-2111
    • Ramos, H.1    Shannon, P.2    Aebersold, R.3
  • 3
    • 33646743767 scopus 로고    scopus 로고
    • The Gaggle: an open-source software system for integrating bioinformatics software and data sources
    • Shannon, P. T., Reiss, D. J., Bonneau, R., Baliga, N. S., The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 2006, 7, 176.
    • (2006) BMC Bioinformatics , vol.7 , pp. 176
    • Shannon, P.T.1    Reiss, D.J.2    Bonneau, R.3    Baliga, N.S.4
  • 4
    • 47949118940 scopus 로고    scopus 로고
    • Systems biology driven software design for the research enterprise
    • Boyle, J., Cavnor, C., Killcoyne, S., Shmulevich, I., Systems biology driven software design for the research enterprise. BMC Bioinformatics 2008, 9, 295.
    • (2008) BMC Bioinformatics , vol.9 , pp. 295
    • Boyle, J.1    Cavnor, C.2    Killcoyne, S.3    Shmulevich, I.4
  • 5
    • 75549085083 scopus 로고    scopus 로고
    • Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology
    • Prasad, T. S., Kandasamy, K., Pandey, A., Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods Mol. Biol. 2009, 577, 67-79.
    • (2009) Methods Mol. Biol. , vol.577 , pp. 67-79
    • Prasad, T.S.1    Kandasamy, K.2    Pandey, A.3
  • 7
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon, S., Gentleman, R., Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23, 257-258.
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 8
    • 38349107287 scopus 로고    scopus 로고
    • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    • Bare, J. C., Shannon, P. T., Schmid, A. K., Baliga, N. S., The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinformatics 2007, 8, 456.
    • (2007) BMC Bioinformatics , vol.8 , pp. 456
    • Bare, J.C.1    Shannon, P.T.2    Schmid, A.K.3    Baliga, N.S.4
  • 9
    • 20144381803 scopus 로고    scopus 로고
    • Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    • Desiere, F., Deutsch, E. W., Nesvizhskii, A. I., Mallick, P. et al., Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol. 2005, 6, R9.
    • (2005) Genome Biol. , vol.6
    • Desiere, F.1    Deutsch, E.W.2    Nesvizhskii, A.I.3    Mallick, P.4
  • 10
  • 11
    • 58149193234 scopus 로고    scopus 로고
    • STRING 8 - a global view on proteins and their functional interactions in 630 organisms
    • Jensen, L. J., Kuhn, M., Stark, M., Chaffron, S. et al., STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009, 37, D412-D416.
    • (2009) Nucleic Acids Res. , vol.37
    • Jensen, L.J.1    Kuhn, M.2    Stark, M.3    Chaffron, S.4
  • 12
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J. et al., DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4, P3.
    • (2003) Genome Biol. , vol.4
    • Dennis Jr., G.1    Sherman, B.T.2    Hosack, D.A.3    Yang, J.4
  • 13
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed, A. I., Sharov, V., White, J., Li, J. et al., TM4: a free, open-source system for microarray data management and analysis. Biotechniques 2003, 34, 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4
  • 14
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P., Markiel, A., Ozier, O., Baliga, N. S. et al., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4
  • 16
    • 2942609149 scopus 로고    scopus 로고
    • VisANT: an online visualization and analysis tool for biological interaction data
    • Hu, Z., Mellor, J., Wu, J., DeLisi, C., VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinformatics 2004, 5, 17.
    • (2004) BMC Bioinformatics , vol.5 , pp. 17
    • Hu, Z.1    Mellor, J.2    Wu, J.3    DeLisi, C.4
  • 18
    • 62149110095 scopus 로고    scopus 로고
    • Corra: computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
    • Brusniak, M. Y., Bodenmiller, B., Campbell, D., Cooke, K. et al., Corra: computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics. BMC Bioinformatics 2008, 9, 542.
    • (2008) BMC Bioinformatics , vol.9 , pp. 542
    • Brusniak, M.Y.1    Bodenmiller, B.2    Campbell, D.3    Cooke, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.