Agrobacterium tumefaciens-mediated transformation for investigation of somatic recombination in the fungal pathogen Armillaria mellea

Applied and Environmental Microbiology

Volumn 76, Issue 24, 2010, Pages 7990-7996

  Baumgartner, Kendra ^a,c   Fujiyoshi, Phillip ^a   Foster, Gary D ^b   Bailey, Andy M ^b  

^a US Department of Agriculture Agricultural Research Service   (United States)

^b UNIVERSITY OF BRISTOL   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGROBACTERIUM TUMEFACIENS; AGROBACTERIUM TUMEFACIENS-MEDIATED TRANSFORMATION; ARMILLARIA; ARMILLARIA MELLEA; ARMILLARIA ROOT DISEASE; ARMILLARIA SPP; ECONOMIC IMPORTANCE; FRUIT TREES; FUNGAL PATHOGEN; GENETIC TRANSFORMATION SYSTEMS; HAPLOTYPES; HYGROMYCIN; HYGROMYCIN PHOSPHOTRANSFERASE GENES; MATINGS; MITOCHONDRIAL MARKER; NATURAL POPULATION; REVERSE TRANSCRIPTION; SOUTHERN HYBRIDIZATION; TRANSFORMANTS; TRANSGENICS; WILD TYPES;

ECOLOGY; FUNGI; MITOCHONDRIA; NUCLEIC ACIDS; ORCHARDS; TRANSCRIPTION;

FORESTRY;

FUNGAL DNA;

BACTERIUM; FRUIT; FUNGAL DISEASE; PATHOGENICITY; POLYMERASE CHAIN REACTION; REAL TIME; RECOMBINATION; REPRODUCTIVE STRATEGY; TIMBER;

ARMILLARIA; ARTICLE; CROSS BREEDING; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETIC RECOMBINATION; GENETIC SELECTION; GENETICS; METHODOLOGY; MICROBIAL GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHIZOBIUM RADIOBACTER;

ARMILLARIA; CROSSES, GENETIC; DNA, FUNGAL; GENETICS, MICROBIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; POLYMERASE CHAIN REACTION; RECOMBINATION, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RHIZOBIUM RADIOBACTER; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA;

BACTERIA; ECOLOGY; FORESTRY; FUNGI; MITOCHONDRIA; NUCLEIC ACIDS; ORCHARDS; PATHOGENS; RESEARCH; SYNTHESIS;

AGROBACTERIUM TUMEFACIENS; ARMILLARIA; ARMILLARIA MELLEA; FUNGI; MYCELIUM (GENUS);

EID: 78650411097     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01049-10     Document Type: Article

References (46)

1. Anderson, J. B., and R. C. Ullrich. 1982. Diploids of Armillaria mellea: Synthesis, stability, and mating behavior. Can. J. Bot. 60:432-439.
2. Baumgartner, K., A. Bailey, G. D. Foster, and S. Kilaru. 2008. Transgene expression in the basidiomycete root pathogen Armillaria mellea. Phytopathology 98:S19.
3. Baumgartner, K., R. Bhat, and P. Fujiyoshi. 2010. A rapid infection assay for Armillaria and real-time PCR quantitation of the fungal biomass in planta. Mycol. Biol. 114:107-119.
4. Baumgartner, K., J. Bruhn, R. Travadon, and S. E. Bergemann. 2010. Contrasting patterns of genetic diversity and population structure of Armillaria mellea sensu stricto in the eastern and western United States. Phytopathology 100:708-718.
5. Baumgartner, K., L. Grubisha, P. Fujiyoshi, M. Garbelotto, and S. E. Bergemann. 2009. Microsatellite markers for the diploid basidiomycete fungus, Armillaria mellea. Mol. Ecol. Res. 9:943-946.
6. Baumgartner, K., and D. M. Rizzo. 2001. Distribution of Armillaria species in California. Mycologia 93:821-830.
7. Beckman, T. G. 2008. 'Sharpe', a clonal plum rootstock for peach. Hort- Science 43:2236-2337.
8. Beckman, T. G., and P. L. Pusey. 2001. Field testing peach rootstocks for resistance to Armillaria root rot. HortScience 36:101-103.
9. Bundock, P., A. Den Dulk-Ras, A. Beijersbergen, and P. J. J. Hooykaas. 1995. Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J. 14:3206-3214.
10. Burns, C., K. Gregory, M. Kirby, M. Cheung, M. Riquelme, T. Elliott, M. Challen, A. Bailey, and G. Foster. 2005. Efficient GFP expression in the mushrooms Agaricus bisporus and Coprinus cinereus requires introns. Fungal Genet. Biol. 42:191-199.
11. Burns, C., K. M. Leach, T. J. Elliott, M. P. Challen, G. D. Foster, and A. Bailey. 2006. Evaluation of Agrobacterium-mediated transformation of Agaricus bisporus using a range of promoters linked to hygromycin resistance. Mol. Biotechnol. 32:129-138.
12. Carvalho, D. B., M. L. Smith, and J. B. Anderson. 1995. Genetic exchange between diploid and haploid mycelia of Armillaria gallica. Mycol. Res. 6:641-647.
13. Casselton, L. A. 1965. The production and behaviour of diploids of Coprinus lagopus. Genet. Res. 6:190-208.
14. Chen, X., M. Stone, C. Schlagnhaufer, and C. Romaine. 2000. A fruiting body tissue method for efficient Agrobacterium-mediated transformation of Agaricus bisporus. Appl. Environ. Microbiol. 66:4510-4513.
15. Clark, T. A., and J. B. Anderson. 2004. Dikaryons of the basidiomycete fungus Schizophyllum commune: Evolution in long-term culture. Genetics 167:1663-1675.
16. de Groot, M. J. A., P. Bundock, P. J. J. Hooykaas, and A. G. M. Beijersbergen. 1998. Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nat. Biotechnol. 16:839-842.
17. Grillo, R., K. Korhonen, J. Hantula, and A. M. Hietala. 2000. Genetic evidence for somatic haploidization in developing fruit bodies of Armillaria tabescens. Fungal Genet. Biol. 30:135-145.
18. Guillaumin, J. J. 1977. Apricot root rot, Armillariella mellea (Vahl) Karst. EPPO Bull. 7:125-135.
19. Guillaumin, J. J., J. B. Anderson, and K. Korhonen. 1991. Life cycle, interfertility, and biological species, p. 10-47. In C. G. Shaw III and G. A. Kile (ed.), Armillaria root disease. U.S. Department of Agriculture Forest Ser- vice agriculture handbook no. 691. U.S. Department of Agriculture, Washington, DC.
20. Guillaumin, J. J., C. Mohammed, and S. Berthelay. 1989. Armillaria species in the northern temperate hemisphere. Proceedings of the Seventh International Conference on Root &Butt Rots., Victoria, British Columbia, Canada.
21. Harmsen, M. C., F. H. J. Schuren, S. M. Moukha, C. M. Vanzuilen, P. J. Punt, and J. G. H. Wessels. 1992. Sequence analysis of the glyceraldehyde- 3-phosphate dehydrogenase genes from basidiomycetes Schizophyllum commune, Phanerochaete chrysosporium and Agaricus bisporus. Curr. Genet. 22: 447-454.
22. Harrington, T. C., and B. D. Wingfield. 1995. A PCR-based identification method for species of Armillaria. Mycologia 87:280-288.
23. Hintikka, V. 1973. A note on the polarity of Armillariella mellea. Karstenia 13:32-39.
24. James, T. Y., S. B. K. Johansson, and H. Johannesson. 2009. Trikaryon formation and nuclear selection in pairings between heterokaryons and homokaryons of the root rot pathogen Heterobasidion parviporum. Mycol. Res. 113:583-590.
25. Kikuchi, G., M. Higuchi, H. Yoshimura, T. Morota, and A. Suzuki. 2008. In vitro symbiosis between Gastrodia elata Blume (Orchidaceae) and Armillaria Kummer (Tricholomataceae) species isolates from the orchid tuber. J. Jpn. Bot. 83:77-87.
26. Kilaru, S., C. M. Collins, A. J. Hartley, A. M. Bailey, and G. D. Foster. 2009. Establishing molecular tools for genetic manipulation of the pleuromutilinproducing fungus Clitopilus passeckerianus. Appl. Environ. Microbiol. 75: 7196-7204.
27. Kile, G. A., G. I. McDonald, and J. W. Byler. 1991. Ecology and disease in natural forests, p. 102-121. In C. G. Shaw III and G. A. Kile (ed.), Armillaria root disease. U.S. Department of Agriculture Forest Service agriculture handbook no. 691. U.S. Department of Agriculture, Washington, DC.
28. Kim, M.-S., N. B. Klopfenstein, G. I. McDonald, K. Arumuganathan, and A. K. Vidaver. 2001. Use of flow cytometry, fluorescence microscopy, and PCR-based techniques to assess intraspecific and interspecific matings of Armillaria species. Mycol. Res. 105:153-163.
29. Kretzer, A. M., and T. D. Bruns. 1999. Use of atp6 in fungal phylogenetics: An example from the Boletales. Mol. Phylogenet. Evol. 13:483-492.
30. Lazo, G. R., P. A. Stein, and R. A. Ludwig. 1991. A DNA transformationcompetent Arabidopsis genomic library in Agrobacterium. Biotechnology 9:963-967.
31. Littell, R. C., G. A. Milliken, W. W. Stroup, and R. D. Wolfinger. 1996. SAS system for mixed models. SAS Institute Inc., Cary, NC.
32. Liu, D., S. Coloe, R. Baird, and J. Pederson. 2000. Rapid mini-preparation of fungal DNA for PCR. J. Clin. Microbiol. 38:471.
33. Marchesi, J. R., T. Sato, A. J. Weightman, T. A. Martin, J. C. Fry, S. J. Hiom, and W. G. Wade. 1998. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 64:795-799. (Pubitemid 28079862)
34. Nubel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:5636-5643.
35. Porebski, S., L. Bailey, and B. Baum. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol. Biol. Rep. 15:8-15.
36. Proffer, T. J., A. L. Jones, and G. R. Ehret. 1987. Biological species of Armillaria isolated from sour cherry orchards in Michigan. Phytopathology 77:941-943.
37. Prospero, S., B. Lung-Escarmant, and C. Dutech. 2008. Genetic structure of an expanding Armillaria root rot fungus (Armillaria ostoyae) population in a managed pine forest in southwestern France. Mol. Ecol. 17:3366-3378.
38. Raabe, R. D. 1962. Host list of the root rot fungus Armillaria mellea. Hilgardia 33:25-88.
39. Redfern, D. B., and G. M. Filip. 1991. Inoculum and infection, p. 48-61. In C. G. Shaw III and G. A. Kile (ed.), Armillaria root disease. U.S. Department of Agriculture Forest Service agriculture handbook no. 691. U.S. Department of Agriculture, Washington, DC.
40. Rizzo, D. M., and T. C. Harrington. 1992. Nuclear migration in diploidhaploid pairings of Armillaria ostoyae. Mycologia 84:863-869.
41. Rustchenko, E. P., D. H. Howard, and F. Sherman. 1994. Chromosomal alterations of Candida albicans are associated with the gain and loss of assimilating functions. J. Bacteriol. 176:3231-3241.
42. Saville, B. J., H. Yoell, and J. B. Anderson. 1996. Genetic exchange and recombination in populations of the root-infecting fungus Armillaria gallica. Mol. Ecol. 5:485-497.
43. Smith, M. L., J. N. Bruhn, and J. B. Anderson. 1992. The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature 356:428-431.
44. Stenlid, J., and A. D. M. Rayner. 1991. Patterns of nuclear migration and heterokaryosis in pairings between sibling homokaryons of Heterobasidion annosum. Mycol. Res. 35:1275-1283.
45. Ullrich, R. C., and J. B. Anderson. 1978. Sex and diploidy in Armillaria mellea. Exp. Mycol. 2:119-129.
46. Worrall, J. J. 1994. Population structure of Armillaria species in several forest types. Mycologia 86:401-407.