Genetic exchange and recombination in populations of the root-infecting fungus Armillaria gallica

Molecular Ecology

Volumn 5, Issue 4, 1996, Pages 485-497

  Saville, B J ^a   Yoell, H ^a   Anderson, J B ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

basidiomycetes; clonality; heteroplasmy; linkage equilibrium; mtDNA

Indexed keywords

AGARICALES; ARMILLARIA; ARMILLARIA GALLICA; BASIDIOMYCOTA; FUNGI;

EID: 0030210044     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.1996.tb00341.x     Document Type: Article

References (53)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
2. Anderson JB, Bailey SS, Pukkila PJ (1989) Variation in ribosomal DNA among biological species of Armillaria, a genus of root-infecting fungi. Evolution, 43, 1652-1662.
3. Anderson JB, Kohn LM (1995) Clonality in soilborne plant pathogenic fungi. Annual Reviews in Phyotpathology, 33, 369-391.
4. Baptista-Ferreira JLC, Economou A, Casselton LA (1983) Mitochondrial genetics of Coprinus: recombination of mitochondrial genomes. Current Genetics, 7, 405-407.
5. Barroso G, Blesa S, Labarere J. (1995) Wide distribution of mitochondrial genome rearrangements in wild strains of the cultivated basidiomycete Agrocybe aegerita. Applied and Environmental Microbiology, 61, 1187-1193.
6. Belcour L, Begel O (1977) Mitochondrial genes in Podospora anserina: recombination and linkage. Molecular and General Genetics, 153, 11-21.
7. Birky CW Jr (1995) Uniparental inheritance of mitochondrial and chloroplast genes: Mechanisms and evolution. Proceedings of the National Academy of Science USA, 92, 11331-11338.
8. Brown AHD, Feldman MW, Nevo E (1980) Multilocus structure of natural populations of Hordeum spontaneum. Genetics, 96, 523-536.
9. Brown WM, George Jr M, Wilson AC (1979) Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Science (USA), 76, 1967-1971.
10. Brunner A, DeCobos AT, Griffiths DE (1977) The isolation and genetic characterization of extracromosomal chloramphenicol and oligomycin-resistant mutants from the petite-negative yeast Kluveromyces lactis. Molecular and General Genetics, 152, 183-191.
11. Bruns TD, Szaro TM (1992) Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Molecular Biology and Evolution, 9, 836-855.
12. Burt A, Carter DA, White TJ, Taylor JW (1994) DNA sequencing with arbitrary primer pairs. Molecular Ecology, 3, 523-525.
13. Chung K-R, Leuchtmann, A, Schardl CL (1996) Inheritance of mitochondrial DNA and plasmids in the ascomycetous fungus Epichloe typhina. Genetics, 142, 259-265.
14. Collins RA, Saville BJ (1990) Independent transfer of mitochondrial chromosomes and plasmids during unstable vegetative fusion in Neurospora. Nature, 345, 177-179.
15. Dujon B, Slonimski PP, Weill L (1974) Mitochondrial Genetics IX: A model for recombination and segregation of mitochondrial genomes in Saccharomyces cerevisiae. Genetics, 78, 415-437.
16. Fort P, Bonhomme F, Darlu P, Piechaczyck M, Jeaneur P, Thaler L (1984) Clonal divergence of mitochondrial DNA vs. populational evolution of nuclear genome. Evolutionary Theory, 7, 81-90.
17. Fukuda M, Harada Y, Imahori S, Fukumasa-Nakai Y, Hayashi Y (1995) Inheritance of mitochondrial DNA in sexual crosses and protoplast cell fusion in Lentinula edodes. Current Genetics, 27, 550-554.
18. Guillaumin JJ, Korhonen K, Anderson JB (1991) Biological species of Armillaria and genetic variation. In: Armillaria Root Disease (eds Shaw III CG, Kile GA), pp. 10-20. USDA Forest Service, Washington, DC.
19. Hintz WEA, Anderson JB, Horgen PA (1988) Nuclear migration and mitochondrial inheritance in the mushroom Agaricus bitorquis. Genetics, 119, 35-12.
20. Hudspeth MES (1992) The fungal mitochondrial genome - A broader perspective. In: Handbook of Applied Mycology, Vol. IV. Fungal Biotechnology (eds Arora DK, Blander RP, Mukerji KG). Marcel Dekker, New York.
21. Lenski RE (1993) Assessing the genetic structure of microbial populations. Proceedings of the National Academy of Science (USA), 90, 4334-1336.
22. Lewis PO, Zaykin D (1995) Genetic Data Analysis: Software for the Analysis of Discrete Genetic Data (test version with permission of the authors). Sinauer Assoc, Sunderland, MA.
23. Lewontin RC (1988) On measures of gametic disequilbrium. Genetics, 120, 849-852.
24. Lonsdale DM, Brears T, Hodge TP, Melville SE, Rottmann WH (1988) The plant mitochondrial genome: homologous recombination as a mechanism for generating heterogeneity. Philosophical Transactions of the Royal Society of London. B Biology Science, 319, 149-164.
25. Mannella CA, Lambowitz A (1978) Interactions of wild-type and poky mitochondrial DNA in heterokaryons of Neurospora. Biochemistry Biophysics Research Communication, 80, 673-679.
26. May G, Taylor JW (1988) Patterns of mating and mitochondrial DNA inheritance in the agaric basidiomycete Coprinus cinereus. Genetics, 118, 213-220.
27. Maynard Smith J, Smith NH, O'Rourke M, Spratt BG (1993) How clonal are bacteria? Proceedings of the National Academy of Science (USA), 90, 4384-4388.
28. Meacham CA (1981) A manual for character compatibility analysis. Taxon, 30, 591-600.
29. Motta JJ (1969) Cytology and morphogenesis in the rhizomorph of Armillaria mellea. American Journal of Botany, 56, 610-619.
30. Nei M, Chesser RK (1983) Estimation of fixation indices and gene diversities. Annals of Human Genetics, 47, 253-259.
31. Palmer JD, Herbon LA (1988) Plant mitochondrial DNA evolves rapidly in structure but slowly in sequence. Journal of Molecular Evolution, 28, 87-97.
32. Rizzo, DM, Blanchette RA, May G (1995) Distribution of Armillaria ostoyae genets in a Pinus resinosa - Pinus banksiana forest. Canadian Journal of Botany, 73, 776-787.
33. Rowlands RT, Turner G (1975) Three-marker extranuclear mitochondrial crosses in Aspergillus nidulans. Molecular and General Genetics, 141, 69-79.
34. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
35. Schmidt WM, Schweyen RJ, Wolf K, Mueller MW (1994) Transposable group II introns in fission and budding yeast. Site-specific genomic instabilities and formation of group II IVS plDNAs. Journal of Molecular Biology, 243, 157-166.
36. Seitz-Mayr G, Wolf K, Kaudewitz F (1978) Extrachromosomal inheritance in Schizosaccharomyces pombe. VII. Studies by zygote clone analysis on transmission, segregation, recombination and uniparental inheritance of mitochondrial markers conferring resistance to antimycin, chloramphenicol and erythromycin. Molecular General Genetics, 164, 309-320.
37. Smith ML, Anderson JB (1994) Mitochondrial DNAs of the fungus Armillaria ostoyae: restriction map and length variation. Current Genetics, 25, 545-553.
38. Smith ML, Bruhn JN, Anderson JB (1992) The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature, 356, 428-131.
39. Smith ML, Bruhn JN, Anderson JB (1994) Relatedness and distribution of Armillaria genets infecting red pine seedlings. Phytopathology, 84, 822-829.
40. Smith ML, Duchesne LC, Bruhn JN, Anderson JB (1990) Mitochondrial genetics in a natural population of the plant pathogen Armillaria. Genetics, 126, 575-582.
41. Specht CA, Novotny CP, Ullrich RC (1992) Mitochondrial DNA of Schizophyllum commune: restriction map, genetic map, and mode of inheritance. Current Genetics, 22, 129-134.
42. Stenlid J, Karlsson J-O, Hogberg N (1994) Intraspecific genetic variation in Heterobasidion annosum revealed by amplification of minisatellite DNA. Mycology Research, 98, 57-63.
43. Swofford D (1993) Phylogenetic Analysis Using Parsimony (version 3. 1. 1). Smithsonian Institution, Washington, DC.
44. Tian G-L, Michel F, Macadre C, Slonimski PP, Lazoska J (1991) Incipient mitochondrial evolution in yeasts II. The complete sequence of the gene coding for cytochrome b in Saccharomyces douglasii reveals the presence of both new and conserved introns and discloses major differences in the fixation of muations in evolution. Journal of Molecular Biology, 218, 747-760.
45. Taylor JW (1986) Fungal evolutionary biology and mitochondrial DNA. Experimental Mycology, 10, 259-269.
46. Ullrich RC (1977) Natural distribution of incompatibility factors in basidiomycetous fungi. Mycologia, 69, 714-719.
47. Vawter L, Brown WM (1986) Nuclear and mitochondrial DNA comparisons reveal extreme rate variation in the molecular clock. Science, 234, 194-196.
48. Wallace DC (1994) Mitochondrial DNA sequence variation in human evolution and disease. Proceedings of the National Academy of Science (USA), 91, 8739-8746.
49. Weir BS (1990) Genetic Data Analysis. Sinauer Associates, Inc. Sunderland MA.
50. Weir BS, Cockerham CC (1978) Testing hypotheses about linkage disequilibrium with multiple alleles. Genetics, 88, 633-642.
51. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols. A Guide to Methods and Applications (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds), pp. 315-324. Academic Press, San Diego, California.
52. Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, Helm-Bychowski KM, Higuchi RG, Palumbi SR, Prager EM, Sage RD, Stoneking M (1985) Mitchondrial DNA and two perspectives on evolutionary genetics. Biology Journal of Linnean Society, 26, 375-400.
53. Zouros E, Golding GB, MacKay TFC (1977) The effect of combining alleles into electrophoretic classes on detecting linkage disequilibrium. Genetics, 85, 543-550.