A pyrosequencing assay for the rapid discrimination of mitochondrial lineages in the Salmo trutta species complex

Molecular Ecology Resources

Volumn 11, Issue 1, 2011, Pages 196-199

  Keller, I ^a   Taverna, A ^a   Seehausen, O ^a,b  

^a SWISS FEDERAL INSTITUTE OF AQUATIC SCIENCE AND TECHNOLOGY   (Switzerland)

^b UNIVERSITY OF BERN   (Switzerland)

Author keywords

Control region; Molecular species identification; Pyrosequencing; Salmo trutta

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; DNA SEQUENCE; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; TROUT;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; TROUT;

SALMO TRUTTA; SALMONIDAE;

EID: 78650162089     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2010.02897.x     Document Type: Article

References (15)

1. Ahmadian A, Ehn M, Hober S (2006) Pyrosequencing: history, biochemistry and future. Clinica Chimica Acta, 363, 83-94.
2. Apostolidis AP, Apostolou PK, Georgiadis A, Sandalzopoulos R (2007) Rapid identification of Salmo trutta lineages by multiplex PCR utilizing primers tailored to discriminate single nucleotide polymorphisms (SNPs) of the mitochondrial control region. Conservation Genetics, 8, 1025-1028.
3. Bernatchez L (2001) The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution, 55, 351-379.
4. Caudron A, Champigneulle A, Guyomard R (2009) Evidence of two contrasting brown trout Salmo trutta populations spatially separated in the River Borne (France) and shift in management towards conservation of the native lineage. Journal of Fish Biology, 74, 1070-1085.
5. Duftner N, Weiss S, Medgyesy N, Sturmbauer C (2003) Enhanced phylogeographic information about Austrian brown trout populations derived from complete mitochondrial control region sequences. Journal of Fish Biology, 62, 427-435.
6. Giuffra E, Bernatchez L, Guyomard R (1994) Mitochondrial control region and protein coding genes sequence variation among phenotypic forms of brown trout Salmo trutta from northern Italy. Molecular Ecology, 3, 161-171.
7. Giuffra E, Guyomard R, Forneris G (1996) Phylogenetic relationships and introgression patterns between incipient parapatric species of Italian brown trout (Salmo trutta L. complex). Molecular Ecology, 5, 207-220.
8. Hansen MM, Ruzzante DE, Nielsen EE, Mensberg K-LD (2000) Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L.). Molecular Ecology, 9, 583-594.
9. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
10. Kottelat M, Freyhof J (2007) Handbook of European Freshwater Fishes. Kottelat, Cornol, Switzerland and Freyhof, Berlin, Germany.
11. Largiadèr CR, Scholl A (1995) Effects of stocking on the genetic diversity of brown trout populations of the Adriatic and Danubian drainages in Switzerland. Journal of Fish Biology, 47 Supplement A, 209-225.
12. Largiadèr CR, Scholl A (1996) Genetic introgression between native and introduced brown trout Salmo trutta L. populations in the Rhone River Basin. Molecular Ecology, 5, 417-426.
13. Meraner A, Baric S, Pelster B, Dalla Via J (2007) Trout (Salmo trutta) mitochondrial DNA polymorphism in the centre of the marble trout distribution area. Hydrobiologia, 579, 337-349.
14. Mezzera M, Largiadèr CR (2001) Comparative analysis of introgression at three marker classes: a case study in a stocked population of brown trout. Journal of Fish Biology, 59, 289-305.
15. Poteaux C, Bonhomme F, Berrebi P (1998) Differences between nuclear and mitochondrial introgressions of brown trout populations from a restocked main river and its unrestocked tributary. Biological Journal of the Linnean Society, 63, 379-392.