-
1
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
DOI 10.1038/86730
-
Hughes, T. R., Mao, M., Jones, A. R., Burchard, J., Marton, M. J., Shannon, K. W., Lefkowitz, S. M., Ziman, M., Schelter, J. M., Meyer, M. R., Kobayashi, S., Davis, C., Dai, H., He, Y. D., Stephaniants, S. B., Cavet, G., Walker, W. L., West, A., Coffey, E., Shoemaker, D. D., Stoughton, R., Blan-chard, A. P., Friend, S. H., and Linsley, P. S. (2001) Expression profiling using microar-rays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol. 19, 342-47. (Pubitemid 32275343)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.4
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
2
-
-
0035852651
-
Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis
-
DOI 10.1073/pnas.98.4.1993
-
Gracey, A. Y., Troll, J. V., and Somero, G. N. (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. Proc Natl Acad Sci USA 98, 1993-8. (Pubitemid 32165611)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.4
, pp. 1993-1998
-
-
Gracey, A.Y.1
Troll, J.V.2
Somero, G.N.3
-
3
-
-
3142533071
-
Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus
-
DOI 10.1242/jeb.01016
-
Podrabsy, J., and Somero, G. (2004) Changes in gene expression associated with acclimation to constant temperatures and fluctuating daily temperatures in an annual killifish Austrofundulus limnaeus. J Exp Biol 207, 2237-54. (Pubitemid 38893562)
-
(2004)
Journal of Experimental Biology
, vol.207
, Issue.13
, pp. 2237-2254
-
-
Podrabsky, J.E.1
Somero, G.N.2
-
4
-
-
0033791308
-
Normalization and subtraction of cap-trapper-selected cdnas to prepare full-length cdna libraries for rapid discovery of new genes
-
Carninci, P., Shibata, Y., Hayatsu, N., Suga-hara, Y., Shibata, K., Itoh, M., Konno, H., Okazaki, Y., Muramatsu, M., and Hayashi-zaki, Y. (2000) Normalization and subtraction of cap-trapper-selected cdnas to prepare full-length cdna libraries for rapid discovery of new genes. Genome Res 10, 1617-30.
-
(2000)
Genome Res
, vol.10
, pp. 1617-1630
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
Suga-Hara, Y.4
Shibata, K.5
Itoh, M.6
Konno, H.7
Okazaki, Y.8
Muramatsu, M.9
Hayashi-Zaki, Y.10
-
5
-
-
0030957829
-
Subtractive cloning: Past, present, and future
-
DOI 10.1146/annurev.biochem.66.1.751
-
Sagerstrom, C. G., Sun, B. I., and Sive, H. L. (1997) Subtractive cloning: Past; present; and future. Ann Rev Biochem 66, 751-83. (Pubitemid 27274673)
-
(1997)
Annual Review of Biochemistry
, vol.66
, pp. 751-783
-
-
Sagerstrom, C.G.1
Sun, B.I.2
Sive, H.L.3
-
6
-
-
84863270581
-
-
Diatchenko, L., Lau, Y. F., Campbell, A. P., Chenchik, A., Moqadam, F., Huang, B.
-
-
-
Diatchenko, L.1
Lau, Y.F.2
Campbell, A.P.3
Chenchik, A.4
Moqadam, F.5
Huang, B.6
-
7
-
-
15844428981
-
Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries
-
DOI 10.1073/pnas.93.12.6025
-
Lukyanov, S., Lukyanov, K., Gurskaya, N., Sverdlov, E. D., and Siebert, P. D. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA 93, 6025-30. (Pubitemid 26190796)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.12
, pp. 6025-6030
-
-
Diatchenko, L.1
Lau, Y.-F.C.2
Campbell, A.P.3
Chenchik, A.4
Moqadam, F.5
Huang, B.6
Lukyanov, S.7
Lukyanov, K.8
Gurskaya, N.9
Sverdlov, E.D.10
Siebert, P.D.11
-
8
-
-
0032990437
-
Suppression sub-tractive hybridization: A versatile method for identifying differentially expressed genes
-
Diatchenko, L., Lukyanov, S., Lau, Y. F. C., and Siebert, P. D. (1999) Suppression sub-tractive hybridization: a versatile method for identifying differentially expressed genes. Methods Enzymol 303, 349-80.
-
(1999)
Methods Enzymol
, vol.303
, pp. 349-380
-
-
Diatchenko, L.1
Lukyanov, S.2
Lau, Y.F.C.3
Siebert, P.D.4
-
9
-
-
63349098779
-
Model-based probe set optimization for high-performance microar-rays
-
doi:10.1093/nar/gkn1001
-
Leparc, G. G., Tüchler, T., Striedner, G., Bayer, K., Sykacek, P., Hofacker, I. P., and Kreil, D. P. (2008) Model-based probe set optimization for high-performance microar-rays. Nucleic Acids Res. doi:10.1093/nar/gkn1001
-
(2008)
Nucleic Acids Res
-
-
Leparc, G.G.1
Tüchler, T.2
Striedner, G.3
Bayer, K.4
Sykacek, P.5
Hofacker, I.P.6
Kreil, D.P.7
-
10
-
-
33747839165
-
Microarray oligonucleotide probes
-
Kreil, D., Russell, R., and Russell, S. (2006) Microarray oligonucleotide probes. Methods Enzymol 410, 73-98.
-
(2006)
Methods Enzymol
, vol.410
, pp. 73-98
-
-
Kreil, D.1
Russell, R.2
Russell, S.3
-
11
-
-
25444518699
-
A generic approach for the design of whole-genome oligoarrays, validated for genotyping, deletion mapping and gene expression analysis on staphylococcus aureus
-
Charbonnier, Y., Gettler, B., Francois, P., Bento, M., Renzoni, A., Vaudaux, P., Schle-gel, W., and Schrenzel, J. (2005) A generic approach for the design of whole-genome oligoarrays, validated for genotyping, deletion mapping and gene expression analysis on Staphylococcus aureus. BMC Genomics 6, 95.
-
(2005)
BMC Genomics
, vol.6
, pp. 95
-
-
Charbonnier, Y.1
Gettler, B.2
Francois, P.3
Bento, M.4
Renzoni, A.5
Vaudaux, P.6
Schle-Gel, W.7
Schrenzel, J.8
-
12
-
-
25444494961
-
Probemaker: An extensible framework for design of sets of oligonucleotide probes
-
Stenberg, J., Nilsson, M., and Landegren, U. (2005) ProbeMaker: an extensible framework for design of sets of oligonucleotide probes. BMC Bioinformatics 6, 229.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 229
-
-
Stenberg, J.1
Nilsson, M.2
Landegren, U.3
-
13
-
-
33644875299
-
Genbank
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Wheeler, D. L. (2006) GenBank. Nucleic Acids Res 1, D16-D20.
-
(2006)
Nucleic Acids Res
, vol.1
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
14
-
-
13444272087
-
Entrez gene: Gene-centered information at ncbi
-
Maglott, D., Ostell, J., Pruitt, K. D., and Tatusova, T. (2005) Entrez gene: gene-centered information at NCBI. Nucleic Acids Res 1, D54-D8.
-
(2005)
Nucleic Acids Res
, vol.1
-
-
Maglott, D.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
15
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
-
Gerhard, D., Wagener, L., Feingold, E., Shenman, C., Grouse, L., Schuler, G., Klein, S., DOld, S., Rasooly, R., and Good, P. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res 41, 2121-27. (Pubitemid 39440194)
-
(2004)
Genome Research
, vol.14
, Issue.10
, pp. 2121-2127
-
-
Gerhard, D.S.1
-
16
-
-
9144232912
-
Uni-prot: The universal protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C.H., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M. J., Natale, D. A., O'Donovan, C., Redaschi, N., and Yeh, L.S. (2004) Uni-Prot: the Universal Protein knowledgebase. Nucleic Acids Res 1, D115-D19.
-
(2004)
Nucleic Acids Res
, vol.1
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
17
-
-
0037102247
-
Use of hybridisation kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays
-
Dai, H., Meyer, M., Stepanients, S., Ziman, M., and Stoughton, R. (2002) Use of hybridisation kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays. Nucleic Acids Res 30, e86.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Dai, H.1
Meyer, M.2
Stepanients, S.3
Ziman, M.4
Stoughton, R.5
-
18
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill, G. (2002) Fundamentals of experimental design for cDNA microarrays. Nat Genet 32, 490-5. (Pubitemid 35435151)
-
(2002)
Nature Genetics
, vol.32
, Issue.SUPPL. DEC.
, pp. 490-495
-
-
Churchill, G.A.1
-
21
-
-
0035375137
-
Computational analysis of microarray data
-
DOI 10.1038/35076576
-
Quackenbush, J. (2001) Computational analysis of microarray data. Nat Rev Genet 2, 418-27. (Pubitemid 33673408)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.6
, pp. 418-427
-
-
Quackenbush, J.1
-
22
-
-
3943113640
-
Using ANOVA to analyze microarray data
-
Churchill, G. A. (2004) Using ANOVA to analyze microarray data. Biotechniques 37, 173-75.
-
(2004)
Biotechniques
, vol.37
, pp. 173-175
-
-
Churchill, G.A.1
-
23
-
-
13244289933
-
Astola, Optimized LOWESS normalization parameter selection for DNA microarray data
-
Berger, J., Hautaniemi, S., Järvinen, A.-K., Edgren, H., Mitra, S., and Astola, Optimized LOWESS normalization parameter selection for DNA microarray data. BMC Bioinformatics 5, 194.
-
BMC Bioinformatics
, vol.5
, pp. 194
-
-
Berger, J.1
Hautaniemi, S.2
Järvinen, A.-K.3
Edgren, H.4
Mitra, S.5
-
24
-
-
0001899550
-
TIGR assembler: A new tool for assembling large shotgun sequencing projects
-
Sutton, G. G., White, O., Adams, M. D. and Kerlavage, A. R. (1995) TIGR Assembler: a New Tool for Assembling Large Shotgun Sequencing Projects. Genome Sci Technol 1, 9-19.
-
(1995)
Genome Sci Technol
, vol.1
, pp. 9-19
-
-
Sutton, G.G.1
White, O.2
Adams, M.D.3
Kerlavage, A.R.4
-
25
-
-
0037252705
-
Database resources of the national center for biotechnology
-
DOI 10.1093/nar/gkg033
-
Wheeler, D. L., Church, D. M., Federhen, S., Lash, A. E., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Sequeira, E., Tatusova, T. A., and Wagner, L. (2003) Database resources of the National Center for Biotechnology. Nucleic Acids Res 31, 28-33. (Pubitemid 36150327)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 28-33
-
-
Wheeler, D.L.1
Church, D.M.2
Federhen, S.3
Lash, A.E.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Sequeira, E.9
Tatusova, T.A.10
Wagner, L.11
-
26
-
-
0038239283
-
OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
-
DOI 10.1093/nar/gkg426
-
Rouillard, J. M., Zuker, M., and Gulari, E. (2003) OligoArray 2.0: design of oligonu-cleotide probes for DNA microarrays using a thermodynamic approach Nucleic Acids Res 31, 3057-62. (Pubitemid 37441764)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.12
, pp. 3057-3062
-
-
Rouillard, J.-M.1
Zuker, M.2
Gulari, E.3
|