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Volumn , Issue , 2010, Pages 531-540

CUDA-based triangulations of convolution molecular surfaces

Author keywords

Algorithms; Experimentation; Measurement; Performance

Indexed keywords

COMPUTATIONAL POWER; DATA SETS; EXPERIMENTATION; GPU-BASED ALGORITHMS; MARCHING CUBE; MARCHING CUBES ALGORITHM; MEMORY STORAGE; MOLECULAR SURFACES; MULTITHREADED; PARALLEL VERSION; PERFORMANCE; REAL TIME PERFORMANCE; REAL-TIME RENDERING; SPEED-UPS; TIME PERFORMANCE; TRIANGULATION ALGORITHMS;

EID: 78650026629     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1851476.1851553     Document Type: Conference Paper
Times cited : (23)

References (25)
  • 1
    • 34547309668 scopus 로고    scopus 로고
    • Available at
    • CUDA Programming Guide 2. Available at: http://developer.download.nvidia. com, 2008.
    • (2008) CUDA Programming Guide 2
  • 3
    • 74349114123 scopus 로고
    • A generalization of algebraic surface drawing
    • July
    • J. F. Blinn. A generalization of algebraic surface drawing. ACM Trans. Graph., 1(3):235-256, July 1982.
    • (1982) ACM Trans. Graph. , vol.1 , Issue.3 , pp. 235-256
    • Blinn, J.F.1
  • 6
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • October
    • M. Connolly. Analytical molecular surface calculation. Journal of Applied Crystallography, 16(5):548-558, October 1983.
    • (1983) Journal of Applied Crystallography , vol.16 , Issue.5 , pp. 548-558
    • Connolly, M.1
  • 7
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • August
    • M. Connolly. Solvent-accessible surfaces of proteins and nucleic acids. Science, 221(4612):709-713, August 1983.
    • (1983) Science , vol.221 , Issue.4612 , pp. 709-713
    • Connolly, M.1
  • 8
    • 70349089332 scopus 로고    scopus 로고
    • A parallel workow for the reconstruction of molecular surfaces
    • C. Bischof, M. Bücker, P. Gibbon, G. Joubert, T. Lippert, B. Mohr, and F. Peters, editors, Parallel Computing: Architectures, Algorithms and Applications. IOS Press
    • D. D'Agostino, I. Merelli, A. Clematis, L. Milanesi, and A. Orro. A parallel workow for the reconstruction of molecular surfaces. In C. Bischof, M. Bücker, P. Gibbon, G. Joubert, T. Lippert, B. Mohr, and F. Peters, editors, Parallel Computing: Architectures, Algorithms and Applications, volume 15 of Advances in Parallel Computing, pages 147-154. IOS Press, 2008.
    • (2008) Advances in Parallel Computing , vol.15 , pp. 147-154
    • D'agostino, D.1    Merelli, I.2    Clematis, A.3    Milanesi, L.4    Orro, A.5
  • 10
    • 63049097858 scopus 로고    scopus 로고
    • Generating complex procedural terrains using the GPU
    • H. Nguyen, editor. Addison-Wesley Professional, New Jersey, USA
    • R. Geiss. Generating complex procedural terrains using the GPU. In H. Nguyen, editor, GPU Gems 3. Addison-Wesley Professional, New Jersey, USA, 2007.
    • (2007) GPU Gems 3
    • Geiss, R.1
  • 11
    • 36049035884 scopus 로고    scopus 로고
    • Parallel prefix sum scan with cuda
    • G. G. 3, editor. Addison-Wesley Professional, Upper Saddle River, New Jersey, Aug
    • M. Harris, S. Sengupta, and J. D. Owens. Parallel prefix sum scan with cuda. In G. G. 3, editor, Hubert Nguyen. Addison-Wesley Professional, Upper Saddle River, New Jersey, Aug 2007.
    • (2007) Hubert Nguyen
    • Harris, M.1    Sengupta, S.2    Owens, J.D.3
  • 12
    • 84913537730 scopus 로고
    • Fast generation of molecular surfaces from 3D data fields with an enhanced "marching cube " algorithm
    • W. Heiden and T. G. J. Brickmann. Fast generation of molecular surfaces from 3D data fields with an enhanced \marching cube" algorithm. Journal of Computational Chemistry, 14(2):246-250, 1993.
    • (1993) Journal of Computational Chemistry , vol.14 , Issue.2 , pp. 246-250
    • Heiden, W.1    Brickmann, T.G.J.2
  • 13
    • 0034503620 scopus 로고    scopus 로고
    • Conscript: A program for generating electron density isosurfaces for presentation in protein crystallography
    • M. C. Lawrence and P. Bourki. Conscript: a program for generating electron density isosurfaces for presentation in protein crystallography. Journal of Applied Crystallography, 33:990-991, 2000.
    • (2000) Journal of Applied Crystallography , vol.33 , pp. 990-991
    • Lawrence, M.C.1    Bourki, P.2
  • 14
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • February
    • B. Lee and F. Richards. The interpretation of protein structures: Estimation of static accessibility. Journal of Molecular Biology, 55(3):379-380, February 1971.
    • (1971) Journal of Molecular Biology , vol.55 , Issue.3 , pp. 379-380
    • Lee, B.1    Richards, F.2
  • 15
    • 0013922772 scopus 로고
    • Molecular model-building by computer
    • June
    • C. Levinthal. Molecular model-building by computer. Scientific American, 214(6):42-52, June 1966.
    • (1966) Scientific American , vol.214 , Issue.6 , pp. 42-52
    • Levinthal, C.1
  • 16
    • 0023381475 scopus 로고
    • Marching cubes: A high resolution 3d surface construction algorithm.
    • July
    • W. Lorensen and H. Cline. Marching cubes: A high resolution 3d surface construction algorithm. ACM SIGGRAPH Computer Graphics, 21(4):163-169, July 1987.
    • (1987) ACM SIGGRAPH Computer Graphics , vol.21 , Issue.4 , pp. 163-169
    • Lorensen, W.1    Cline, H.2
  • 18
    • 1342323419 scopus 로고    scopus 로고
    • High performance simd marching cubes isosurface extraction on commodity computers
    • T. Newman, J. Byrd, P. Emani, A. Narayanan, and A. Dastmalchi. High performance simd marching cubes isosurface extraction on commodity computers. Computers & Graphics, 28:213-233, 2004.
    • (2004) Computers & Graphics , vol.28 , pp. 213-233
    • Newman, T.1    Byrd, J.2    Emani, P.3    Narayanan, A.4    Dastmalchi, A.5
  • 20
    • 0017429069 scopus 로고
    • Areas, volumes, packing, and protein structure
    • February
    • F. Richards. Areas, volumes, packing, and protein structure. Annual Review of Biophysics and Bioengineering, 6(3):151-176, February 1977.
    • (1977) Annual Review of Biophysics and Bioengineering , vol.6 , Issue.3 , pp. 151-176
    • Richards, F.1
  • 21
    • 4243850724 scopus 로고    scopus 로고
    • A vector-parallel realization of the marching cubes
    • Computer Science Department, The University of Alabama in Huntsville, USA
    • N. Tang and T. Newman. A vector-parallel realization of the marching cubes. Technical Report TR-UAH-CS-1996-01, Computer Science Department, The University of Alabama in Huntsville, USA, 1996.
    • (1996) Technical Report TR-UAH-CS-1996-01
    • Tang, N.1    Newman, T.2
  • 22
    • 78650019643 scopus 로고    scopus 로고
    • DX 10: Pratical metaballs and implicit surfaces
    • Y. Uralsky. DX 10: Pratical metaballs and implicit surfaces. In Game Developers Conference, 2006.
    • (2006) Game Developers Conference
    • Uralsky, Y.1
  • 23
    • 0030793507 scopus 로고    scopus 로고
    • Sims: Computation of a smooth invariant molecular surface
    • Y. Vorobjev and J. Hermans. Sims: Computation of a smooth invariant molecular surface. Biophysical Journal, 73(2):722-732, 1997.
    • (1997) Biophysical Journal , vol.73 , Issue.2 , pp. 722-732
    • Vorobjev, Y.1    Hermans, J.2
  • 24
    • 0000238022 scopus 로고
    • Data structure for soft objects
    • February
    • G. Wyvill, C. McPheeters, and B. Wyvill. Data Structure for Soft Objects. The Visual Computer, 2(4):227-234, February 1986.
    • (1986) The Visual Computer , vol.2 , Issue.4 , pp. 227-234
    • Wyvill, G.1    McPheeters, C.2    Wyvill, B.3
  • 25
    • 42749086211 scopus 로고    scopus 로고
    • Feature-preserving adaptive mesh generation for molecular shape modeling and simulation
    • Z. Yu, M. Holst, Y. Cheng, and J. McCammon. Feature-preserving adaptive mesh generation for molecular shape modeling and simulation. Journal of Molecular Graphics and Modelling, 26:1370-1380, 2008.
    • (2008) Journal of Molecular Graphics and Modelling , vol.26 , pp. 1370-1380
    • Yu, Z.1    Holst, M.2    Cheng, Y.3    McCammon, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.