Identification of three tomato flower and fruit MADS-box proteins with a putative histone deacetylase binding domain

Gene

Volumn 471, Issue 1-2, 2011, Pages 19-26

  Gaffe, Joël ^a,b   Lemercier, Claudie ^b,c,d   Alcaraz, Jean Pierre ^a,b   Kuntz, Marcel ^a,b  

^a Lab Plaste et Différenciation Cellulaire   (France)

^b UNIV GRENOBLE ALPES   (France)

^c CEA GRENOBLE   (France)

^d CNRS   (France)

Author keywords

HDAC; Interaction; MADS box; MEF2; Nuclear; Tomato; Transcription

Indexed keywords

COMPLEMENTARY DNA; HISTONE DEACETYLASE; HISTONE DEACETYLASE 5; MADS DOMAIN PROTEIN; MESSENGER RNA; MYOCYTE ENHANCER FACTOR 2; PROTEIN LEMADS1; PROTEIN LEMADS5; PROTEIN LEMADS6; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GAL4; UNCLASSIFIED DRUG;

ACETYLATION; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; FLOWER; FRUIT; GENE EXPRESSION; GENE TARGETING; HUMAN; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT LEAF; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; REPORTER GENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TOBACCO; TOMATO;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; DNA PRIMERS; DNA, PLANT; DNA-BINDING PROTEINS; EXONS; FLOWERS; GENES, PLANT; GENES, REPORTER; HISTONE DEACETYLASES; INTRONS; LYCOPERSICON ESCULENTUM; MADS DOMAIN PROTEINS; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RNA, PLANT; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

LYCOPERSICON ESCULENTUM; MAMMALIA; NICOTIANA TABACUM;

EID: 78649881998     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2010.10.002     Document Type: Article

References (40)

1. Alvarez-Buylla E.R., Pelaz S., Liljegren S.J., Gold S.E., Burgeff C., Ditta G.S., Ribas de Pouplana L., Martinez-Castilla L., Yanofsky M.F. An ancestral MADS-box gene duplication occurred before the divergence of plants and animals. Proc Natl Acad Sci. U S A. 2000, 97:5328-5333.
2. Ampomah-Dwamena C., Morris B.A., Sutherland P., Veit B., Yao J.L. Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Plant Physiol. 2002, 130:605-617.
3. Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K., Kapoor S. MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 2007, 18:242-263.
4. Bemer M., Wolters-Arts M., Grossniklaus U., Angenent G.C. The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell. 2008, 20:2088-2101.
5. 2+-dependent gene expression mediated by MEF2 transcription factors. J. Biol. Chem. 2000, 275:197-209.
6. Brambilla V., Battaglia R., Colombo M., Masiero S., Bencivenga S., Kater M.M., Colombo L. Genetic and molecular interactions between BELL1 and MADS box factors support ovule development in Arabidopsis. Plant Cell. 2007, 19:2544-2556.
7. Chen Z.J., Tian L. Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochim. Biophys. Acta 2007, 1769:295-307.
8. Egea-Cortines M., Saedler H., Sommer H. Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus. EMBO J. 1999, 18:5370-5379.
9. Gaffe J., Bru J.P., Causse M., Vidal A., Stamitti-Bert L., Carde J.P., Gallusci P. LEFPS1, a tomato farnesyl pyrophosphate gene highly expressed during early fruit development. Plant Physiol. 2000, 123:1351-1362.
10. Giovannoni J.J. Fruit ripening mutants yield insights into ripening control. Curr. Opin. Plant Biol. 2007, 10:283-289.
11. Hileman L.C., Sundstrom J.F., Litt A., Chen M., Shumba T., Irish V.F. Molecular and phylogenetic analyses of the MADS-box gene family in tomato. Mol. Biol. Evol. 2006, 23:2245-2258.
12. Hill K., Wang H., Perry S.E. A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components. Plant J. 2008, 53:172-185.
13. Hollender C., Liu Z. Histone deacetylase genes in Arabidopsis development. J. Integr. Plant Biol. 2008, 50:875-885.
14. Immink R.G., Gadella T.W., Ferrario S., Busscher M., Angenent G.C. Analysis of MADS-box protein-protein interactions in living plant cells. Proc. Natl. Acad. Sci. U S A. 2002, 99:2416-2421.
15. Itkin M., Seybold H., Breitel D., Rogachev I., Meir S., Aharoni A. TOMATO AGAMOUS-LIKE 1 is a component of the fruit ripening regulatory network. Plant J. 2009, 60:1081-1095.
16. Kato N., Pontier D., Lam E. Spectral profiling for the simultaneous observation of four distinct fluorescent proteins and detection of protein-protein interaction via fluorescence resonance energy transfer in tobacco leaf nuclei. Plant Physiol. 2002, 129:931-942.
17. Kaufmann K., Melzer R., Theissen G. MIKC-type MADS-domain proteins: structural modularity, protein interactions and network evolution in land plants. Gene 2005, 347:183-198.
18. Krizek B.A., Meyerowitz E.M. Mapping the protein regions responsible for the functional specificities of the Arabidopsis MADS domain organ-identity proteins. Proc. Natl. Acad. Sci. U S A. 1996, 93:4063-4070.
19. Lee J., Oh M., Park H., Lee I. SOC1 translocated to the nucleus by interaction with AGL24 directly regulates LEAFY. Plant J. 2008, 55:832-843.
20. Lemercier C., Verdel A., Galloo B., Curtet S., Brocard M.P., Khochbin S. mHDA1/HDAC5 histone deacetylase interacts with and represses MEF2A transcriptional activity. J. Biol. Chem. 2000, 275:15594-15599.
21. Lemercier C., Brocard M.P., Puvion-Dutilleul F., Kao H.Y., Albagli O., Khochbin S. Class II histone deacetylases are directly recruited by BCL6 transcriptional repressor. J. Biol. Chem. 2002, 277:22045-22052.
22. Lightfoot D.J., Malone K.M., Timmis J.N., Orford S.J. Evidence for alternative splicing of MADS-box transcripts in developing cotton fibre cells. Mol. Genet. Genomics 2008, 279:75-85.
23. Lim J., Moon Y.H., An G., Jang S.K. Two rice MADS domain proteins interact with OsMADS1. Plant Mol. Biol. 2000, 44:513-527.
24. Liu C., Xi W., Shen L., Tan C., Yu H. Regulation of floral patterning by flowering time genes. Dev. Cell. 2009, 16:711-722.
25. Lu J., McKinsey T.A., Zhang C.L., Olson E.L. Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases. Mol. Cell. 2000, 6:233-244.
26. Masiero S., Imbriano C., Ravasio F., Favaro R., Pelucchi N., Gorla M.S., Mantovani R., Colombo L., Kater M.M. Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB. J. Biol. Chem. 2002, 277:26429-26435.
27. McKinsey T.A., Zhang C.L., Olson E.N. Control of muscle development by dueling HATs and HDACs. Curr. Opin. Genet. Dev. 2001, 11:497-504.
28. Meissner R., Chague V., Zhu Q., Emmanuel E., Elkind Y., Levy A.A. A high throughput system for transposon tagging and promoter trapping in tomato. Plant J. 2000, 22:265-274.
29. Nadeau J.A. Stomatal development: new signals and fate determinants. Curr. Opin. Plant Biol. 2009, 12:29-35.
30. Páez-Valencia J., Valencia-Mayoral P., Sánchez-Gómez C., Contreras-Ramos A., Hernández-Lucas I., Martínez-Barajas E., Gamboa-DeBuen A. Identification of fructose-1, 6-bisphosphate aldolase cytosolic class I as an NMH7 MADS domain associated protein. Biochem. Biophys. Res. Commun. 2008, 28:700-705.
31. Potthoff M.J., Olson E.N. MEF2: a central regulator of diverse developmental programs. Development 2007, 134:4131-4140.
32. Rijpkema A.S., Gerats T., Vandenbussche M. Evolutionary complexity of MADS complexes. Curr. Opin. Plant. Biol. 2007, 10:32-38.
33. Robles P., Pelaz S. Flower and fruit development in Arabidopsis thaliana. Int. J. Dev. Biol. 2005, 49:633-643.
34. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, New York.
35. Soltis D.E., Ma H., Frohlich M.W., Soltis P.S., Albert V.A., Oppenheimer D.G., Altman N.S., dePamphilis C., Leebens-Mack J. The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression. Trends Plant Sci. 2007, 12:358-367.
36. Theissen G., Melzer R. Molecular mechanisms underlying origin and diversification of the angiosperm flower. Ann. Bot. (Lond). 2007, 100:603-619.
37. Theissen G., Becker A., Di-Rosa A., Kanno A., Kim J.T., Munster T., Winter K.U., Saedler H. A short history of MADS-box genes in plants. Plant Mol. Biol. 2000, 42:115-149.
38. Walch-Liu P., Forde B.G. Nitrate signalling mediated by the NRT1.1 nitrate transporter antagonises l-glutamate-induced changes in root architecture. Plant J 2008, 54:820-828.
39. West A.G., Causier B.E., Davies B., Sharrocks A.D. DNA binding and dimerisation determinants of Antirrhinum majus MADS-box transcription factors. Nucleic Acids Res. 1998, 26:5277-5287.
40. Yang S.-H., Bumpass D.C., Perkins N.D., Sharrocks A.D. The ETS domain transcription factor Elk-1 contains a novel class of repression domain. Mol. Cell. Biol. 2002, 22:5036-5046.