Effect modification of air pollution on Urinary 8-Hydroxy-2'-Deoxyguanosine by genotypes: An application of the multiple testing procedure to identify significant SNP interactions

Environmental Health: A Global Access Science Source

Volumn 9, Issue 1, 2010, Pages

  Ren, Cizao ^a   Vokonas, Pantel S ^b   Suh, Helen ^a   Fang, Shona ^a   Christiani, David C ^a   Schwartz, Joel ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^b BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

8 HYDROXYDEOXYGUANOSINE; BIOLOGICAL MARKER; CATALASE; GLUTATHIONE TRANSFERASE M1; GLUTATHIONE TRANSFERASE P1; ORGANIC CARBON; OZONE; SULFATE; 8-HYDROXY-2'-DEOXYGUANOSINE; CARBON; DEOXYGUANOSINE; DRUG DERIVATIVE;

AGING; ATMOSPHERIC POLLUTION; BIOMARKER; HEALTH RISK; OXIDATION; POLLUTION EXPOSURE; PUBLIC HEALTH;

AGED; AIR POLLUTION; ARTICLE; GENETIC VARIABILITY; GENOTYPE; HUMAN; LONGITUDINAL STUDY; MALE; MICROARRAY ANALYSIS; NORMAL HUMAN; OXIDATIVE STRESS; POLLUTANT; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; WILD TYPE; COHORT ANALYSIS; ENVIRONMENTAL EXPOSURE; GENETICS; MIDDLE AGED; PARTICULATE MATTER; UNITED STATES; URINE;

AGED; AGED, 80 AND OVER; AIR POLLUTION; CARBON; COHORT STUDIES; DEOXYGUANOSINE; ENVIRONMENTAL EXPOSURE; HUMANS; LONGITUDINAL STUDIES; MALE; MASSACHUSETTS; MIDDLE AGED; OXIDATIVE STRESS; OZONE; PARTICULATE MATTER; POLYMORPHISM, SINGLE NUCLEOTIDE; SULFATES;

EID: 78649722200     PISSN: None     EISSN: 1476069X     Source Type: Journal    
DOI: 10.1186/1476-069X-9-78     Document Type: Article

References (70)

1. The effects of particulate air pollution on daily deaths: a multi-city case-crossover analysis. J Schwartz, Occup Environ Med 2004 61 956 961 10.1136/oem.2003.008250 15550600
2. Ozone and short-term mortality in 95 US urban communities, 1987-2000. ML Bell A McDermott SL Zeger JM Samet F Dominici, JAMA 2004 292 2372 2378 10.1001/jama.292.19.2372 15547165
3. Fine particulate air pollution and hospital admission for cardiovascular and respiratory diseases. F Dominici RD Peng ML Bell L Pham A McDermott SL Zeger JM Samet, JAMA 2006 295 1127 1134 10.1001/jama.295.10.1127 16522832
4. Particulate air pollution, progression, survival after myocardial infarction. A Zanobetti J Schwartz, Environ Health Perspect 2007 115 769 775 10.1289/ehp.9201 17520066
5. Ozone modifies associations between temperature and cardiovascular mortality: analysis the NMMAPS data. C Ren GM Willims L Morawska K Mengersen S Tong, Occup Environ Med 2008 65 255 260 10.1136/oem.2007.033878 17890300
6. Lipid and endothelial related genes, ambient particulate matter, and heart rate variability - the VA Normative Aging Study. C Ren A Baccarelli E Wilker H Suh D Sparrow P Vokonas R Wright J Schwartz, J Epidemiol Community Health 2010 64 49 56 10.1136/jech.2008.083295 19602472
7. Cardiovascular effects of air pollution. RD Brook, Clin Sci 2008 115 175 187 10.1042/CS20070444 18691154
8. Concentrated ambient air particles induce mild pulmonary inflammation in healthy human volunteers. AJ Ghio C Kim RB Devlin, Am J Respir Crit Care Med 2000 162 981 988 10988117
9. Urinary 8-hydroxy-2'-deoxyguanosine as a biomarker of oxidative DNA damage in workers exposure to fine particles. JY Kim S Mukherjee L Ngo DC Christiani, Environ Health Perspect 2004 112 666 671 10.1289/ehp.6827 15121508
10. Rapid increases in the steady-state concentration of reactive oxygen species in the lungs and heart after particulate air pollution inhalation. SA Gurgueira J Lawrence B Coull GK Murthy B Gonzlez-Flecha, Environ Health Perspect 2002 110 749 755 10.1289/ehp.02110749 12153754
11. Personal exposure to ultrafine particles and oxidative DNA damage. PS Vinzents P Møller M Sørensen LE Knudsen O Hertel FP Jensen B Schibye S Loft, Environ Health Perspect 2005 113 1485 1490 10.1289/ehp.7562 16263500
12. Air pollution and homocysteine: more evidence that oxidative stress-related genes modify effects of particulate air pollution. C Ren SK Park PS Vokonas D Sparrow E Wilker A Baccarelli H Suh J Schwartz, Epidemiology 2010 21 198 206 10.1097/EDE.0b013e3181cc8bfc 20110814
13. HFE genotype, particulate air pollution, and heart rate variability - a gene-environment interaction. SK Park MS O'Neill RO Wright H Hu PS Vokonas D Sparrow H Suh J Schwartz, Circulation 2006 114 2798 2805 10.1161/CIRCULATIONAHA. 106.643197 17145987
14. Glutathione-S-transferase M1, obesity, statins, and autonomic effects of particles: gene-by-drug-by-environment interaction. J Schwartz SK Park MS O'Neill PS Vokonas D Sparrow S Welss K Kelsey, Am J Respir Crit Care Med 2005 172 1529 1533 10.1164/rccm.200412-1698OC 16020798
15. Particulate air pollution, oxidative stress genes, and heart rate variability in an elderly cohort. T Chahine A Baccarelli A Litonjua RO Write H Suh DR Gold D Sparrow P Vokonas J Schwartz, Environ Health Perspect 2007 115 1617 1622 10.1289/ehp.10318 18007994
16. Inflammatory markers and particulate air pollution: characterizing the pathway to disease. A Zeka JR Sullivan PS Vokonas D Sparrow J Schwartz, Int J Epidemiol 2006 35 1347 1354 10.1093/ije/dyl132 16844771
17. Formation of 8-hydroxygunine moiety in cellular DNA by agents producing oxygen radicals and evidence for its repair. H Kasai PF Crain Y Kuchino S Nishimura A Ootsuyama H Tanooka, Carcinogenesis 1986 7 1849 1851 10.1093/carcin/7.11.1849 3769133
18. DNA repair is responsible for the presence of oxidative damaged DNA lesions in urine. MS Cooke MD Evans R Dove R Rozalski D Gackowski A Siomek J Lunec R Olinski, Mutat Res 2005 574 1-2 58 66 15914207
19. Oxidative DNA damage estimated by urinary 8-hydroxydeoxyguanosine and indoor air pollution among non-smoking office employees. CY Lu YC Ma JM Lin CY Chuang FC Sung, Environ Res 2007 103 331 337 10.1016/j.envres.2006.08.009 17034784
20. The effect of urban air pollution on inflammation, oxidative stress, coagulation, and autonomic dysfunction in young adults. KJ Chuang CC Chang TC Su CT Lee CS Tang, Am J Respir Crit Care Med 2007 176 370 376 10.1164/rccm.200611- 1627OC 17463411
21. Damage to DNA by reactive oxygen and nitrogen species: role in inflammatory disease and progression to cancer. H Wiseman B Halliwell, Biochem J 1996 313 17 29 8546679
22. Endothelial function and oxidative stress in cardiovascular diseases. Y Higashi K Noma M Yoshizumi Y Kihara, Circ J 2009 73 411 418 10.1253/circj.CJ-08- 1102 19194043
23. Urinary 8-hydroxy-2'-deoxyguanosine as a biomarker of oxidative DNA damage induced by ambient pollution in the Normative Aging Study. C Ren S Fang RO Wright H Suh J Schwartz, Occup Environ Med 2010 [Online Oct 27, 2010] 20980452
24. Vitamin D-related genes, serum vitamin D concentrations and prostate cancer risk. J Anh D Albanes SI Berndt U Peters N Chatterjee ND Freedman CC Abnet WY Huang AS Kibel DE Crawford SJ Weinstein SJ Chanock A Schatzki RB Hayes, Carcinogenesis 2009 30 5 769 776 10.1093/carcin/bgp055 19255064
25. Multiple testing procedures: R multtest package and application to genetics. KS Pollard S Dudiot MJ van der Lann, 2005 http://www.bepress.com/ ucbbiostat/paper164/ 15693941
26. Multiple hypothesis testing in microarray experiments. S Dudoit JP Shaffer JC Boldrick, Stat Sci 2003 18 71 103 10.1214/ss/1056397487 (Pubitemid 41461823)
27. Multiple testing part I: single-step procedures for control of general type I error rates. S Dudoit M van der Laan KS Pollard, Stat Appl Genet Mol Biol 2004 3 13
28. Multiple testing part II: step down procedures for control of family-wise error rate. M van der Laan S Dudoit KS Pollard, Stat Appl Genet Mol Biol 2004 3 14
29. The veterans Administration longitudinal study of healthy aging. B Bell C Rose A Damon, Gerontologist 1966 6 179 184 5342911
30. Biomarker evidence of DNA oxidation in lung cancer patients: association of urinary 8-hydroxy-2'-deoxyguanosine excretion with radiotherapy, chemotherapy, and response to treatment. M Erhola S Toyokuni K Okada T Tanaka H Hiai H Ochi K Uchida T Osawa MM Nieminen H Alho Pl Kellokumpu-Lehtinen, FEBS lett 1997 409 287 291 10.1016/S0014-5793(97)00523-1 9202163
31. New biomarker evidence of oxidative DNA damage in patients with non-insulin-dependent diabetes mellitus. J Leinonen T Lehtimaki S Toyokuni K Okada T Tanaka H Hiai H Ochi P Laippala V Rantalaiho O Virta A Pasternack H Alho, FEBS Lett 1997 417 150 152 10.1016/S0014-5793(97)01273-8 9395094
32. Traffic-related particles are associated with elevated homocysteine - the VA Normative Aging Study. SK Park MS O'Neill PS Vokonas D Sparrow III Spiro A KL Tucker H Suh H Hu J Schwartz, Am J Respir Crit Care Med 2008 178 283 289 10.1164/rccm.200708-1286OC 18467508
33. High homocysteine and low B vitamins predict cognitive decline in aging men: the Veterans Affairs Normative Aging Study. KL Tucker N Qiao T Scott I Rosenberg A Spiro III, Am J Clin Nutr 2005 82 627 635 16155277
34. Kinetic serum creatinine assays. II. A critcal evaluation and review. L Bowers E Wong, Clin Chem 1980 26 555 7020989
35. An evaluation of summer discomfort in the United States using a relative climatologic index. L Kalkstein K Valamont, Bull Am Meteorol Soc 1986 67 842 848 10.1175/1520-0477(1986)067<0842:AEOSDI>2.0.CO;2
36. Divalent metal transporter-1 decreases metal-related injury in the lung. AJ Ghio CA Piantadosi X Wang,, et al. Am J Physiol Lung Cell Mol Physiol 2005 289 460 467 10.1152/ajplung.00154.2005 (Pubitemid 41192722)
37. Glutathione and glutathione dependent enzymes respresent a co-ordinately regulated defense against oxidative stress. JD Hayes LI McLellan, Free Radic Res 1999 31 273 300 10.1080/10715769900300851 10517533
38. Effect of glutathione-S-transferase M1 and P1 genotypes on xenobiotic enhancement of allergic responses: randomized, placebo-controlled crossover study. FD Gilliland YF LI A Saxon D Diaz-Sanchez, Lancet 2004 363 119 125 10.1016/S0140-6736(03)15262-2 14726165
39. A common functional C-T substitution polymorphisms in the promoter region of the human catalase gene influences transcription factor binding, reporter gene transcription and is correlated to blood catalase levels. L Forsberg L Lyrenäs U de Faire R Morgenstern, Free Radic Biol Med 2001 30 500 505 10.1016/S0891-5849(00)00487-1 11182520
40. Genetic variation in glutathione-related genes and body burden of methylmercury. KS Engstöm U Strömberg T Lundh I Johansson B Vessby G Hallmans S Skerfving K Broberg, Environ Health Perspect 2008 116 734 739 18560528
41. Lung function loss, smoking, vitamin C intake, and polymorphisms of the glutamate-cysteine ligase genes. M Siedlinski DS Postma CC van Diemen A Blokstra HA Smit HM Boezen, Am J Respir Crit Care Med 2008 178 13 19 10.1164/rccm.200711-1749OC 18420959
42. The effects of hydrogen peroxide promoted by homocysteine and inherited catalase deficiency on human hypocatalasemic patients. L Gáth M Vitai, Free Radic Biol Med 2003 35 882 888 14556852
43. Microsatellite polymorphism in promoter of heme oxygenase-1 gene is associated with susceptibility to coronary artery disease in type 2 diabetes patients. YH Chen SJ Lin MW Lin HL Tsai SS Kuo JW chen MJ Charng TC Wu LC Chen PYA Ding WH Pan YS Jou LY Chau, Hum Genet 2002 111 1 8 10.1007/s00439-002-0769-4 12136229
44. Heme oxygenase-1 gene promoter polymorphism is associated with coronary artery disease in Japanese patients with coronary risk factors. H Kaneda M Ohno J Taguchi M Togo H Hashimoto K Ogasawara T Aizawa N Ishizaka R Nagai, Arterioscler Thromb Vasc Biol 2002 22 1680 1685 10.1161/01.ATV.0000033515.96747. 6F 12377749
45. A new MALDI-TOF based mini-sequencing assay for genotyping of SNPs. X Sun H Ding K Hung B Guo, Nucleic Acids Res 2000 28 68 10.1093/nar/28.12.e68 10871391
46. Allelic discrimination by nick-translation PCR with fluorogenic probes. LG Lee CR Connell W Bloch, Nucleic Acids Res 1993 21 3761 3766 10.1093/nar/21.16.3761 8367293
47. Prediction of creatinine clearance from serum creatinine. DW Cockcroft MH Gault, Nephron 1976 16 31 41 10.1159/000180580 1244564
48. Effects of glutathione-S-transferase M1, maternal smoking during pregnancy, and environmental tobacco smoke on asthma and wheezing in children. FD Gilliland Y Li L Dubeau K Berhane E Avol WJ Gauderman JM Peters, Am J Respir Crit Care Med 2002 166 457 463 10.1164/rccm.2112064 12186820
49. Polymorphism of quinone-metabolizing enzymes and susceptibility to ozone-induced acute effects. E Bergamaschi G De Palma P Mozzoni S Vanni MV Vettori F Broeckaert A Bernard A Mutti, Am J Respir Crit Care Med 2001 163 1426 1431 11371413
50. Glutahione S-transferase polymorphisms and risk of ovarian cancer: a HuGE review. SS Couphlin IJ Hall, Genet Med 2002 4 250 257 10.1097/00125817- 200207000-00003 12172391
51. Genetic polymorphism of GSTM1 and antioxidante supplementation influence lung function in relation to ozone exposure in asthmatic children in Mexico City. I Romieu JJ Sienra-Monge M Ramírez-Aguilar H Moreno-Macías NI Reyes-Ruiz B Estela del Rio-Navarro M Hernndez-Avila SJ London, Thorax 2004 59 8 10 14694237
52. Effects of glutathione S-transferase P1, M1, and T1 on acute respiratory illness in school children. FD Gilliland EB Rappaport K Berhane T Islam L Dubeau WJ Gauderman R McConnell, Am J Respir Crit Care Med 2002 166 346 351 10.1164/rccm.2111048 12153968
53. Effects of glutathione-S-transferase M1, T, and P1 on childhood lung function growth. FD Gilliland WJ Gauderman H Vora E Rappaport L Dubeau, Am J Respir Crit Care Med 2002 166 710 716 10.1164/rccm.2112065 12204870
54. Polymorphisms of drug-metabolizing enzymes CYP1A1, GSTT and GSTP contributed to the development of diffuse large B-cell lymphoma risk the Saudi Arabian population. F Al-Dyyel M Al-Rasheed M Ibrahim R Bu P Bavi J Abubaker N Al-Jomah GH Mohamed A Moorji S Uddin AK Siral K Al-Kuraya, Leuk Lymphoma 2008 49 122 129 10.1080/10428190701704605 18203021
55. Development of lung cancer before the age of 50: the role of xenobiotic metabolizing genes. F Gemignani S Landi N Szeszenia-Dabrowska D Zaridze J Lissowska P Rudnai E Fabianova D Mates L Foretova V Janout V Bencko V Gaborieau L Gioia-Patricola I Bellini1 R Barale F Canzian J Hall P Boffetta RJ Hung P Brennan, Carcinogenesis 2007 28 1287 1293 10.1093/carcin/bgm021 17259654
56. Influence of glutathione-S-transferase (GSTM1, GSTP1, GSTT1) and cytochrome p450 (CYP1A, CYP2D6) polymorphisms on numbers of basal cell carcinomas (BCCs) in families with the naevoid basal cell carcinoma syndrome. XR Yang PM Pfeiffer AM Goldstein, J Med Genet 2006 43 16 10.1136/jmg.2005.035006 16582078
57. Metabolic gene variants and risk of non-Hodgkin's lymphoma. AJ De Roos LS Gold S Wang P Hartge JR Cerhan W Cozen M Yeager S Chanock N Rothman RK Severson, Cancer Epidemiol Biomarkers Prev 2006 15 1647 1653 10.1158/1055-9965.EPI-06-0193 16985026 (Pubitemid 44497100)
58. Glutathione S-transferase mu, omega, pi, and theta class variants and smoking in Parkinson's disease. AD Wahner CE Glatt JM Bronstein B Ritz, Neurosci Lett 2007 413 274 278 10.1016/j.neulet.2006.11.053 17194543
59. Interactions between glutathione S-transferase P1, tumor necrosis factor, and traffic-related air pollution for development of childhood allergic disease. E Melén F Nyberg CM Lindgren N Berglind M Zucchelli E Nording J Hallberg M Svartengren R Morgenstern J Kere T Bellander M Wickman G Pershagen, Environ Health Perspect 2008 116 1077 1084 18709160
60. Black carbon exposure, oxidative stress genes, and blood pressure in a repeated measures study. I Mordukhovich E Wilker H Suh R Wright D Sparrow PS Vokonas Schwartz, Environ Health Perspect 2009 117 1767 1772 20049130
61. Vitamin D-related genes, serum vitamin D concentrations and prostate cancer risk. J Ahn D Albanes SI Berndt U Peters N Chatterjee ND Freedman CC Abnet W Huang AS Kibel ED Crawford SJ Weinstein SJ Chanock A Schatzikin RB Hayes, Carcinogenesis 2009 30 769 776 10.1093/carcin/bgp055 19255064
62. Review and meta-analysis on vitamin D receptor polymorphisms and cancer risk. S Raimondi H Johansson P Maisonneuve S Gandini, Carcinogenesis 2009 30 1170 1180 10.1093/carcin/bgp103 19403841
63. Vitamin D gene pathway polymorphisms and risk of colorectal, breast, and prostate cancer. ML McCullough RM Bostick TL Mayo, Annu Rev Nutr 2009 29 111 132 10.1146/annurev-nutr-080508-141248 19400699
64. Vitamin D deficiency and risk of cardiovascular disease. TJ Wang MJ Pencina SL Booth PF Jacques E Ingelsson K Lanier EJ Benjamin RB D'Agostino M Wolf RS Vasan, Circulation 2008 117 503 511 10.1161/CIRCULATIONAHA.107.706127 18180395
65. Isolation and characterization of the human catalase gene. F Quan RG Korneluk MB Tropak RA Gravel, Nucleic Acids Res 1986 14 5321 5335 10.1093/nar/14.13.5321 3755525
66. 2removing enzyme in erythrocytes. S Mueller HD Riedel W Stremmel, Blood 1997 90 4973 4978 9389716
67. Associations between catalase phenotype and genetype: modification by epidemiologic factors. J Ahn S Nowell SE McCann J Yu L Carter NP Lang FF Kadlubar LD Ratnasinghe CB Ambrosone, Cancer Epidemiol Biomarkers Prev 2006 15 1217 1222 10.1158/1055-9965.EPI-06-0104 16775184
68. Catalase enzyme mutations and their association with diseases. L Gáth P Rass A Py, Mol Diagn 2004 8 141 149 15771551
69. Particulate matter exposure induces persistent lung inflammation and endothelial dysfunction. E Tamagawa N Bai K Morimoto E Yatera X Zhang L Xing Y Li I Laher DD Sin SFP Man SF van Eeden, Am J Physiol Cell Mol Physiol 2008 295 79 85 10.1152/ajplung.00048.2007
70. Ambient gas concentrations and personal particulate matter exposures: implications for studying the health effects of particles. JA Sarnat KW Brown J Schwartz BA Coull P Koutrakis, Epidemiology 2005 16 385 395 10.1097/01.ede. 0000155505.04775.33 15824556