Instantaneous and causal connectivity in resting state brain networks derived from functional MRI data

NeuroImage

Volumn 54, Issue 2, 2011, Pages 1043-1052

  Deshpande, Gopikrishna ^a   Santhanam, Priya ^a   Hu, Xiaoping ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Default mode network; Dorsal attention network; Effective connectivity; Fronto parietal control network; Functional connectivity; Functional MRI; Granger causality; Hippocampal cortical memory network; Resting state brain networks

Indexed keywords

ADOLESCENT; ARTICLE; AWARENESS; BRAIN BLOOD FLOW; BRAIN FUNCTION; BRAIN REGION; CINGULATE GYRUS; CONTROLLED STUDY; FEMALE; FRONTAL CORTEX; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HIPPOCAMPUS; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INSULA; MALE; MEMORY CONSOLIDATION; NERVE CELL; NERVE CELL NETWORK; NORMAL HUMAN; PARIETAL LOBE; PREFRONTAL CORTEX; PRIORITY JOURNAL; TEMPORAL CORTEX; VOLUNTEER;

ADOLESCENT; BRAIN; BRAIN MAPPING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; NERVE NET; NEURAL PATHWAYS; REST;

EID: 78649656025     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.09.024     Document Type: Article

References (76)

1. Baker S., Rogers R., Owen A., Frith C., Dolan R., Frackowiak R., et al. Neural systems engaged by planning: a PET study of the Tower of London task. Neuropsychologia 1996, 34:515-526.
2. Biswal B., Yetkin F., Haughton V., Hyde J. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn. Reson. Med. 1995, 34(4):537-541.
3. Blinowska K., Kus R., Kaminski M. Granger causality and information flow in multivariate processes. Phys. Rev. E 2004, 70:50902-50906.
4. Bressler, S., & Seth, A. (in press). Wiener-Granger causality: a well established methodology. NeuroImage. doi:10.1016/j.neuroimage.2010.02.059.
5. Buckner R., Andrews-Hanna J., Schacter D. The brain's default network: anatomy, function and relevance to disease. Ann. N.Y. Acad. Sci. 2008, 1124:1-38.
6. Bucknor R., Carroll D. Self-projection and the brain. Trends Cogn. Sci. 2007, 11:49-57.
7. Cabeza R., Ciaramelli E., Olson I., Moscovitch M. The parietal cortex and episodic memory: an attentional account. Nat. Rev. Neurosci. 2008, 9:612-625.
8. Christoff K., Gabrieli J. The frontopolar cortex and human cognition: evidence for a rostrocaudal heirarchical organisation within the human prefrontal cortex. Psychobiology 2000, 28:168-186.
9. Craig A. How do you feel? interoception: the sense of the physiological condition of the body. Nat. Rev. Neurosci. 2002, 3:655-666.
10. Critchley H., Wiens S., Rotshtein P., Ohman A., Dolan R. Neural systems supporting interoceptive awareness. Nat. Neurosci. 2004, 7:189-195.
11. Damasio A. The Feeling of What Happens: Body and Emotion in the Making of Consciousness 2000, Harcourt, Chicago.
12. David O., Guillemain I., Saillet S., Reyt S., Deransart C., Segebarth C., et al. Identifying neural drivers with functional MRI: an electrophysiological validation. PLoS Biol. 2008, 6(12):2683-2697.
13. Deshpande G., Hu X., Stilla R., Sathian K. Effective connectivity during haptic perception: a study using Granger causality analysis of functional magnetic resonance imaging data. Neuroimage 2008, 40(4):1807-1814.
14. Deshpande G., LaConte S., James G., Peltier S., Hu X. Multivariate Granger causality analysis of brain networks. Hum. Brain Mapp. 2009, 30(4):1361-1373.
15. Deshpande G., Hu X., Lacey S., Stilla R., Sathian K. Object familiarity modulates effective connectivity during haptic shape perception. Neuroimage 2010, 49(3):1991-2000.
16. Deshpande G., Sathian K., Hu X. Assessing and compensating for zero-lag correlation effects in time-lagged Granger causality analysis of fMRI. IEEE Transactions on Biomedical Engineering 2010, 57(6):1446-1456.
17. Deshpande G., Sathian K., Hu X. Effect of hemodynamic variability on Granger causality analysis of fMRI. Neuroimage 2010, 52(3):884-896.
18. Ebbels T., Buxton B., Jones D. springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an 'information landscape'. Bioinformatics 2006, 22(14):e99-e107.
19. Farrer C., Frith C. Experiencing oneself vs another person as being the cause of an action: the neural correlates of the experience of agency. Neuroimage 2002, 15(3):596-603.
20. Fox M., Snyder A., Vincent J., Corbetta M., Van Essen D., Raichle M. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc. Natl. Acad. Sci. U.S.A. 2005, 102(27):9673-9678.
21. Fox M., Corbetta M., Snyder A., Vincent J., Raichle M. Spntaneous neuronal activity distinguishes human dorsal and ventral attention systems. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:10046-10051.
22. Fransson P. Spontaneous low-frequency BOLD signal fluctuations: an fMRI investigation of the resting-state default mode of brain function hypothesis. Hum. Brain Mapp. 2005, 26(1):15-29.
23. Fransson P., Marrelec G. The precuneus/posterior cingulate cortex plays a pivotal role in the default mode network: evidence from a partial correlation network analysis. Neuroimage 2008, 42:1178-1184.
24. Friston K. Functional and effective connectivity in neuroimaging: a synthesis. Hum. Brain Mapp. 1995, 2:56-78.
25. Friston K. Causal modelling and brain connectivity in functional magnetic resonance imaging. PLoS Biol. 2009, 7(2):e33.
26. Friston K., Holmes A., Ashburner J. Retrieved from Statistical Parametric Mapping (SPM) http://www.fil.ion.ucl.ac.uk/spm/.
27. Friston K., Harrison L., Penny W. Dynamic causal modeling. Neuroimage 2003, 19(4):1273-1302.
28. Fruchterman T., Reingold E. Graph drawing by force-directed. Softw. Pract. Exp. 1991, 21:1129.
29. Gabow H. Path-based depth-first search for strong and biconnected components. Inf. Process. Lett. 2000, 74:107-114.
30. Geweke J. Measurement of linear dependence and feedback between multiple time series. J. Am. Stat. Assoc. 1982, 77(378):304-313.
31. Granger C. Investigating causal relations by econometric models and cross-spectral methods. Econometrica 1969, 37(3):424-438.
32. Grecius M., Krasnow B., Reiss A., Menon V. Functional connectivity in the resting brain: a network analysis of the default mode hypothesis. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:253-258.
33. Gusnard D., Raichle M. Searching for a baseline: functional neuroimaging and the resting human brain. Nat. Rev. Neurosci. 2001, 3:685-694.
34. Handwerker D., Ollinger J., D'Esposito M. Variation of BOLD hemodynamic responses across subjects and brain regions and their effects on statistical analyses. Neuroimage 2004, 21:1639-1651.
35. He B., Raichle M. The fMRI signal, slow cortical potential and consciousness. Trend Cogn. Sci. 2009, 13(7):302-309.
36. He B., Snyder A., Zempel J., Smyth M., Raichle M. Electrophysiological correlates of the brain's intrinsic large-scale functional architecture. Proc. Natl. Acad. Sci. U.S.A. 2008, 105(41):16039-16044.
37. Heer J., Boyd D. Vizster: visualizing online social networks. Proceedings of IEEE Symposium on Information Visualization 2005, 33-40. (Minneapolis MN) doi:10.1109/INFVIS.2005.1532126.
38. Jabobs B., Schall M., Prather M., Kapler E., Driscoll L., Baca S., et al. Regional dendritic and spine variation in human cerebral cortex: a quantitative golgi study. Cereb. Cortex 2001, 11(6):558-571.
39. Kahn I., Andrews-Hanna J., Vincent J., Snyder A., Buckner R. Distinct cortical anatomy linked to subregions of the medial temporal lobe revealed by intrinsic functional connectivity. J. Neuropysiol. 2008, 100(1):129-139.
40. Kaminski M., Ding M., Truccolo W., Bressler S. Evaluating causal relations in neural systems: Granger causality, directed transfer function and statistical assessment of significance. Biol. Cybern. 2001, 85:145-157.
41. Katwal S., Gatenby J., Gore J., Rogers B. Minimum resolvable latency difference of BOLD responses at 7T using autoregressive modeling. Proceedings of the 17th Annual Meeting of the International Society for Magnetic Resonance in Medicine 2009, 17:3677.
42. Kim H., Daselaar S., Cabeza R. Overlapping brain activity between episodic memory encoding and retrieval: roles of the task-positive and task-negative networks. Neuroimage 2010, 49:1045-1054.
43. Koechlin E., Basso G., Pietrini P., Panzer S., Grafman J. The role of the anterior prefrontal cortex in human cognition. Nature 1999, 399:148-151.
44. Krueger, F., Landgraf, S., van der Meer, E., Deshpande, G., & Hu, X. (in press). Effective connectivity of the multiplication network: a functional MRI and multivariate granger causality mapping study. Hum. Brain Mapp. doi:10.1002/hbm.21119.
45. Kus R., Kaminski M., Blinowska K. Determination of EEG activity propagation: pair-wise versus multichannel estimate. IEEE Trans. Biomed. Eng. 2004, 51(9):1501-1510.
46. Leopold D., Murayama Y., Logothetis N. Very slow activity fluctuations in monkey visual cortex: implications for functional brain imaging. Cereb. Cortex 2003, 13:423-433.
47. Liao W., Mantini D., Zhang Z., Pan Z., Ding J., Gong Q., et al. Evaluating the effective connectivity of resting state networks using conditional Granger causality. Biol. Cybern. 2010, 102(1):57-69.
48. Naqvi N., Rudrauf D., Damasio H., Bechara A. Damage to the insula disrupts addiction to cigarette smoking. Science 2007, 315:531-534.
49. Nir Y., Mukamel R., Dinstein I., Privman E., Harel M., Fisch L., et al. Correlation of slow spontaneous neuronal fluctuations across hemispheres in human sensory cortex. Proceedings of the 10th International Conference on Cognitive Neuroscience 2008, 10.3389/conf.neuro.09.2009.01.066.
50. Raichle M., MacLeod A., Snyder A., Powers W., Gusnard D. A default mode of brain function. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:676-682.
51. Ramnani N., Owen A. Anterior prefrontal cortex: insights into function from anatomy and neuroimaging. Nat. Rev. Neurosci. 2004, 5:184-194.
52. Roebroeck A., Formisano E., Goebel R. Mapping directed influence over the brain using Granger causality and fMRI. Neuroimage 2005, 25:230-242.
53. Roebroeck, A., Formisano, E., & Goebel, R. (in press). Reply to Friston and David After comments on: The identification of interacting networks in the brain using fMRI: Model selection, causality and deconvolution. NeuroImage. doi:10.1016/j.neuroimage.2009.10.077.
54. Roebroeck, A., Formisano, E., & Goebel, R. (in press). The identification of interacting networks in the brain using fMRI: Model selection, causality and deconvolution. NeuroImage. doi:10.1016/j.neuroimage.2009.09.036.
55. Rogers B., Katwal S., Morgan V., Asplund C., Gore J. Functional MRI and multivariate autoregressive models. Magn. Reson. Imaging 2010, 28(8):1058-1065.
56. Rugg M., Fletcher P., Allan K., Frith C., Frackowiak R., Dolan R. Neural correlates of memory retrieval during recognition memory and cued recall. Neuroimage 1998, 8(3):262-273.
57. Russo F., Martínez A., Sereno M., Pitzalis S., Hillyard S. Cortical sources of the early components of the visual evoked potential. Hum. Brain Mapp. 2001, 15:95-111.
58. Sato J., Junior E., Takahashi D., Felix M., Brammer M., Morettin P. A method to produce evolving functional connectivity maps during the course of an fMRI experiment using wavelet-based time-varying Granger causality. Neuroimage 2006, 31(1):187-196.
59. Schroeder M., Gilbert D., van Helden J., Noy P. Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. Inf. Sci. 2001, 139:19.
60. Schwartz G. Estimating the dimension of a model. Ann. Stat. 1978, 5(2):461-464.
61. Shallice T. Specific Impairments of Planning. Philos. Trans R. Soc. Lond. B 1982, 298:199-209.
62. Shmuel A., Leopold D. Neuronal correlates of spontaneous fluctuations in fMRI signals in monkey visual cortex: implications for functional connectivity at rest. Hum. Brain Mapp. 2008, 29(7):751-761.
63. Spreng R., Stevens W., Chamberlain J., Gilmore A., Schacter D. Default network activity, coupled with frontoparietal control network, supports goal-directed cognition. Neuroimage 2010, 53(1):303-317.
64. Sridharan D., Levitin D., Menon V. A critical role for the right fronto-insular cortex in switching between central-executive and default-mode networks. Proc. Natl Acad. Sci. USA 2008, 105(34):2569-12574.
65. Stilla R., Deshpande G., Laconte S., Hu X., Sathian K. Posteromedial parietal cortical activity and inputs predict tactile spatial acuity. J. Neurosci. 2007, 27(41):11091-11102.
66. Stilla R., Hanna R., Mariola E., Deshpande G., Hu X., Sathian K. Neural processing underlying tactile microspatial discrimination in the blind: a functional magnetic resonance imaging study. J. Vis. 2008, 8(10):13.1-13.19.
67. Talairach J., Tournoux P. Co-Planar Stereotaxic Atlas of the Human Brain 1988, Thieme Medical Publishers, New York.
68. Theiler J., Eubank S., Longtin A., Galdrikian B., Farmer D. Testing for nonlinearity in time series: the method of surrogate data. Physica D 1992, 58:77-94.
69. Tsakiris M., Hesse M., Boy C., Haggard P., Fink G. Neural signatures of body ownership: a sensory network for bodily self-consciousness. Cereb. Cortex 2007, 17(10):2235-2244.
70. Tulving E. Elements of Episodic Memory 1983, Oxford University Press, Clarendon.
71. Turkeltaub P., Eden G., Jones K., Zeffiro T. Meta-analysis of the functional neuroanatomy of single-word reading: method and validation. NeuroImage 2002, 16(3.1):765-780.
72. Uddin L., Clare Kelly A., Biswal B., Castallanos F., Milham M. Functional connectivity of default mode network components: correlation, anticorrelation, and causality. Hum. Brain Mapp. 2009, 30:625-637.
73. Vincent J., Kahn I., Snyder A., Raichle M., Buckner R. Evidence for a frontoparietal control system revealed by intrinsic functional connectivity. J. Neurophysiol. 2008, 100:3328-3342.
74. Wagner A., Shannon B., Kahn I., Bucknor R. Parietal lobe contributions to episodic memory retrieval. Trend Cogn. Sci. 2005, 9(9):445-453.
75. Wei W. The effects of systematic sampling and temporal aggregation on causality - a cautionary note. J. Am. Stat. Assoc. 1982, 77(378):316320.
76. Zhuang J., LaConte S., Peltier S., Zhang K., Hu X. Connectivity exploration with structural equation modeling: an fMRI study of bimanual motor coordination. Neuroimage 2005, 25(2):462-470.