Evaluation of reverse transcription loop- mediated isothermal amplification assays for rapid diagnosis of pandemic influenza A/H1N1 2009 virus

Journal of Medical Virology

Volumn 83, Issue 1, 2011, Pages 10-15

  Nakauchi, Mina ^a   Yoshikawa, Tetsushi ^b   Nakai, Hidetaka ^b   Sugata, Ken ^b   Yoshikawa, Akiko ^b   Asano, Yoshizo ^b   Ihira, Masaru ^c   Tashiro, Masato ^a   Kageyama, Tsutomu ^a  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^b FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c FUJITA HEALTH UNIVERSITY   (Japan)

Author keywords

Pandemic influenza A H1N1 2009 virus; Rapid diagnosis; RT LAMP

Indexed keywords

MATRIX PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS PROTEIN HA;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC TEST; HUMAN; INFLUENZA A (H1N1); INFLUENZA VIRUS A; INFLUENZA VIRUS A H1N1; NONHUMAN; PANDEMIC INFLUENZA; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN;

HEMAGGLUTININS, VIRAL; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; TEMPERATURE; VIRAL MATRIX PROTEINS; VIROLOGY;

INFLUENZA A VIRUS;

EID: 78649555669     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21934     Document Type: Article

References (27)

1. Bose ME, Beck ET, Ledeboer N, Kehl SC, Jurgens LA, Patitucci T, Witt L, LaGue E, Darga P, He J, Fan J, Kumar S, Henrickson KJ. 2009. Rapid semiautomated subtyping of influenza virus species during the 2009 swine origin influenza A H1N1 virus epidemic in Milwaukee, Wisconsin. J Clin Microbiol 47: 2779-2786.
2. Carr MJ, Gunson R, Maclean A, Coughlan S, Fitzgerald M, Scully M, O'Herlihy B, Ryan J, O'Flanagan D, Connell J, Carman WF, Hall WW. 2009. Development of a real- time RT- PCR for the detection of swine- lineage influenza A (H1N1) virus infections. J Clin Virol 45: 196-199.
3. Chidlow GHG, Williams S, Levy A, Speers D, Smith DW. 2010. Duplex real- time RT- PCR assays for the rapid detection and identification of pandemic (H1N1) 2009 and seasonal influenza viruses A/H1, A/H3 and B. J Clin Microbiol 48: 862-866.
4. Hall RJ, Peacey M, Huang QS, Carter PE. 2009. Rapid method to support diagnosis of swine origin influenza virus infection by sequencing of real- time PCR amplicons from diagnostic assays. J Clin Microbiol 47: 3053-3054.
5. He J, Bose ME, Beck ET, Fan J, Tiwari S, Metallo J, Jurgens LA, Kehl SC, Ledeboer N, Kumar S, Weisburg W, Henrickson KJ. 2009. Rapid multiplex reverse transcription- PCR typing of influenza A and B virus, and subtyping of influenza A virus into H1, 2, 3, 5, 7, 9, N1 (human), N1 (animal), N2, and N7, including typing of novel swine origin influenza A (H1N1) virus, during the 2009 outbreak in Milwaukee, Wisconsin. J Clin Microbiol 47: 2772-2778.
6. Hong TC, Mai QL, Cuong DV, Parida M, Minekawa H, Notomi T, Hasebe F, Morita K. 2004. Development and evaluation of a novel loop- mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus. J Clin Microbiol 42: 1956-1961.
7. Iizuka I, Saijo M, Shiota T, Ami Y, Suzaki Y, Nagata N, Hasegawa H, Sakai K, Fukushi S, Mizutani T, Ogata M, Nakauchi M, Kurane I, Mizuguchi M, Morikawa S. 2009. Loop- mediated isothermal amplification- based diagnostic assay for monkeypox virus infections. J Med Virol 81: 1102-1108.
8. Imai M, Ninomiya A, Minekawa H, Notomi T, Ishizaki T, Tashiro M, Odagiri T. 2006. Development of H5- RT- LAMP (loop- mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. Vaccine 24: 6679-6682.
9. Imai M, Ninomiya A, Minekawa H, Notomi T, Ishizaki T, Van Tu P, Tien NT, Tashiro M, Odagiri T. 2007. Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene- specific loop- mediated isothermal amplification method. J Virol Methods 141: 173-180.
10. Ito M, Watanabe M, Nakagawa N, Ihara T, Okuno Y. 2006. Rapid detection and typing of influenza A and B by loop- mediated isothermal amplification: Comparison with immunochromatography and virus isolation. J Virol Methods 135: 272-275.
11. Kubo T, Agoh M, Mai le Q, Fukushima K, Nishimura H, Yamaguchi A, Hirano M, Yoshikawa A, Hasebe F, Kohno S, Morita K. 2010. Development of a reverse transcription- loop- mediated isothermal amplification assay for detection of pandemic (H1N1) 2009 virus as a novel molecular method for diagnosis of pandemic influenza in resource- limited settings. J Clin Microbiol 48: 728-735.
12. Lam WY, Leung TF, Lee N, Cheung JL, Yeung AC, Ho YI, Chan RC, Fung KS, Barr IG, Hui DS, Sung JJ, Chan PK. Development and comparison of molecular assays for the rapid detection of the pandemic influenza A (H1N1) 2009 virus. J Med Virol 82: 675-683.
13. Lau SK, Chan KH, Yip CC, Ng TK, Tsang OT, Woo PC, Yuen KY. 2009. Confirmation of the first Hong Kong case of human infection by novel swine origin influenza A (H1N1) virus diagnosed using ultrarapid, real- time reverse transcriptase PCR. J Clin Microbiol 47: 2344-2346.
14. LeBlanc JJ, Li Y, Bastien N, Forward KR, Davidson RJ, Hatchette TF. 2009. Switching gears for an influenza pandemic: Validation of a duplex reverse transcriptase PCR assay for simultaneous detection and confirmatory identification of pandemic (H1N1) 2009 influenza virus. J Clin Microbiol 47: 3805-3813.
15. Mori N, Motegi Y, Shimamura Y, Ezaki T, Natsumeda T, Yonekawa T, Ota Y, Notomi T, Nakayama T. 2006. Development of a new method for diagnosis of rubella virus infection by reverse transcription- loop- mediated isothermal amplification. J Clin Microbiol 44: 3268-3273.
16. Nagamine K, Hase T, Notomi T. 2002. Accelerated reaction by loop- mediated isothermal amplification using loop primers. Mol Cell Probes 16: 223-229.
17. Nakauchi M, Yasui Y, Miyoshi T, Minagawa H, Tanaka T, Tashiro M, Kageyama T. 2010. Improving one- step real- time reverse transcription- pcr assays for detecting and subtyping pandemic (H1N1) 2009, seasonal H1N1, and seasonal H3N2 influenza viruses. Under submission.
18. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T. 2000. Loop- mediated isothermal amplification of DNA. Nucleic Acids Res 28: E63.
19. Pabbaraju K, Wong S, Wong AA, Appleyard GD, Chui L, Pang XL, Yanow SK, Fonseca K, Lee BE, Fox JD, Preiksaitis JK. 2009. Design and validation of real- time reverse transcription- PCR assays for detection of pandemic (H1N1) 2009 virus. J Clin Microbiol 47: 3454-3460.
20. Poon LL, Leung CS, Chan KH, Lee JH, Yuen KY, Guan Y, Peiris JS. 2005. Detection of human influenza A viruses by loop- mediated isothermal amplification. J Clin Microbiol 43: 427-430.
21. Shirato K, Nishimura H, Saijo M, Okamoto M, Noda M, Tashiro M, Taguchi F. 2007. Diagnosis of human respiratory syncytial virus infection using reverse transcription loop- mediated isothermal amplification. J Virol Methods 139: 78-84.
22. Wang R, Sheng ZM, Taubenberger JK. 2009. Detection of novel (swine origin) H1N1 influenza A virus by quantitative real- time reverse transcription- PCR. J Clin Microbiol 47: 2675-2677.
23. WHO. 2009a. Global influenza surveillance network: Laboratory surveillance and response to pandemic H1N1 2009. Wkly Epidemiol Rec 84: 361-365.
24. WHO. 2009b. New influenza A(H1N1) virus infections: Global surveillance summary, May 2009. Wkly Epidemiol Rec 84: 173-179.
25. WHO. 2009c. Transmission dynamics and impact of pandemic influenza A (H1N1) 2009 virus. Wkly Epidemiol Rec 84: 481-484.
26. Yang JR, Lo J, Liu JL, Lin CH, Ho YL, Chen CJ, Wu HS, Liu MT. 2009. Rapid SYBR green I and modified probe real- time reverse transcription- PCR assays identify influenza H1N1 viruses and distinguish between pandemic and seasonal strains. J Clin Microbiol 47: 3714-3716.
27. Yoneyama T, Kiyohara T, Shimasaki N, Kobayashi G, Ota Y, Notomi T, Totsuka A, Wakita T. 2007. Rapid and real- time detection of hepatitis A virus by reverse transcription loop- mediated isothermal amplification assay. J Virol Methods 145: 162-168.