Comparative analysis of the microbial communities inhabiting halite evaporates of the Atacama Desert

International Microbiology

Volumn 13, Issue 2, 2010, Pages 79-89

  de los Rí os, Asunción ^a   Valea, Sergio ^a   Ascaso, Carmen ^a   Davila, Alfonso ^b   Kastovsky, Jan ^c   McKay, Christopher P ^d   Gómez Silva, Benito ^e   Ierzchos, Jacek ^a  

^a CSIC   (Spain)

^b SETI INSTITUTE   (United States)

^c UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

^d NASA AMES RESEARCH CENTER   (United States)

^e UNIVERSIDAD DE ANTOFAGASTA   (Chile)

Author keywords

Archaea; Atacama Desert; Bacteria; Cyanobacteria; Halite evaporates; Prokaryotic diversity

Indexed keywords

BACTERIA (MICROORGANISMS); CHROOCOCCIDIOPSIS; CYANOBACTERIA; HALOTHECE; PROKARYOTA;

EID: 78649518448     PISSN: 11396709     EISSN: 16181905     Source Type: Journal    
DOI: 10.2436/20.1501.01.113     Document Type: Article

References (50)

1. Alpert P (2006) Constraints of tolerance: why are desiccation-tolerant organisms so small or rare? J Exp Biol 209:1575-1584
2. Antón J, Oren A, Benlloch S, Rodríguez-Varela F, Amann RI, Roselló-Mora R (2002) Salinibacter ruber gen. nov., a novel extremely halophilic member of the acteria from saltern crystallizer ponds. Int J Syst Evol Micr 52:485-491
3. Baati H, Guermazi S, Amdouni R, Gharsallah N, Sghir R, Ammar E (2008) Prokaryotic diversity of a Tunisian multipond saltern. Extremophiles 12:505-518
4. Benlloch S, López-López A, Casamayor EO, et al. (2002) Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol 4:349-360
5. Bhatnagar A, Bhatnagar M (2005) Microbial diversity in desert ecosystems. Curr Sci 89:91-100
6. Billi D (2009) Subcellular integrities in Chroococcidiopsis sp. CCMEE 029 survivors after prolonged desiccation revealed by molecular probes and genome stability assays. Extremophiles 13:49-57
7. Billi D, Potts M (2002) Life and death of dried prok aryotes. Res Microbiol 153:7-12
8. Bowman JP, McCammon SA, Rea SM, McMeekin TA (2000) The microbial composition of three limnologically disparate hypersaline antarctic lakes. FEMS Microbiol Letters 183:81-88
9. Casamayor EO, Massana R, Benlloch S, et al. (2002) Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4:338-348
10. Castresana J (2000) Selection of conserved clocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
11. Cockell CS, Raven JA (2004) Zones of photosynthetic potential on Mars and the early Earth. Icarus 169:300-310
12. Connon SA, Lester ED, Shafaat HS, Obenhuber DC, Ponce A (2007) Bacterial diversity in hyperarid Atacama Desert soils. J Geophys Res 112 G04S17, 9 pp
13. Davila AF, Gómez-Silva B, De los Ríos A, Ascaso C, Olivares H, McKay C, Wierzchos J (2008) Facilitation of endolithic microbial survival in the hyperarid core of the Atacama Desert by mineral deliquescence. J Geophys Res 113 G01028, 9 pp
14. De los Ríos A, Ascaso C (2002) Preparative techniques for transmission electron microscopy and confocal laser scanning microscopy of lichens. In: Kranner I, et al. (eds) Protocols in lichenology. Springer, Berlin, pp 87-151
15. De los Ríos A, Ascaso C, Wierzchos J (1999) Study of lichens with different state of hydration by the combination of low temperature scanning electron and confocal laser scanning microscopies. Int Microbiol 2:251-257
16. De los Ríos A, Wierzchos J, Sancho LG, Ascaso C (2003) Acid microenvironments in microbial biofilms of antarctic endolithic microecosystems. Environ Microbiol 5:231-237
17. De los Ríos A, Wiezchos J, Sancho LG, Ascaso C (2004) Exploring the physiological state of continental antarctic endolithic microorganisms by microscopy. FEMS Microbiol Ecol 50:143-152
18. Demergasso C, Casamayor EO, Chong G, Galleguillos P, Escudero L, Pedrós-Alió C (2004) Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile. FEMS Microbiol Ecol 48:57-69
19. Demergasso C, Escudero L, Casamayor EO, Chong G, Balague V, Pedrós-Alió C (2008) Novelty and spatio-temporal heterogeneicity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama). Extremophiles 12:491-504
20. Denner EBM, McGenity TJ, Busse HJ, Grant W, Wanner G, Stan-Lotter H (1994) Halococcus salidifonae sp. nov., an archaeal isolate from Austrian salt mine. Int J Syst Bacteriol 44:774-780
21. Dong H, Rech JA, Jiang H, Sun H, Buck BJ (2007) Endolithic cyanobacteria in soil gypsum: occurrences in Atacama (Chile), Mojave (United States), and Al-Jafr Basin (Jordan) deserts. J Geophys Res 112 G02030, 11 pp
22. Empadinhas N, da Costa M (2008) Osmoadaptation mechanisms in prokaryotes: distribution of compatible solutes. Int Microbiol 11:151-161
23. García-Pichel F, Nübel U, Muyzer G (1998) The phylogeny of unicellular, extremely halotolerant cyanobacteria. Arch Microbiol 169:469-482
24. Gruber C, Legat A, Pfaffenhuemer M, Radax C, Weidler G, Busse HJ, Stan-Lotter H (2004) Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permo-Triassic salt deposit, classification of Halobacterium sp. NRC-1 as a strain of Halobacterium salinarum and emended description of Halobacterium salinarum. Extremophiles 8:431-439
25. Hartley AJ, Chong G, Houston J, Mather E (2005) 150 million years of climatic stability: evidence from the Atacama Desert, northern Chile. J Geol Soc 162:421-424
26. Kastovsky J, Johansen JR (2008) Mastigocladus laminosus (Stigonematales, Cyanobacteria): phylogenetic relationship of strains from thermal springs to soil-inhabiting genera of the order and taxonomic implications for the genus. Phycologia 47:307-320
27. Kis-Papo T, Kirzhner V, Wasser SP, Nevo E (2003) Evolution of genomic diversity and sex at extreme environments: fungal life under hypersaline Dead Sea stress. Proc Natl Acad Sci USA 100:14970-14975
28. Kuhlman KR, Venkat P, La Duc MT, Kuhlman GM, McKay CP (2008) Evidence of a microbial community associated with rock varnish at Yungay, Atacama Desert, Chile. J Geophys Res 113 G04022, 14 pp
29. Lester ED, Satomi M, Ponce A (2007) Microflora of extreme arid Atacama Desert soils. Soil Biol Biochem 39:704-708
30. Lozupone CA, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104:11436-11440
31. Margheri M, Ventura S, Kastovsky J, Komarek J (2008) The taxonomic validation of the cyanobacterial genus Halothece. Phycologia 47:477-486
32. Maturrano L, Santos F, Rosselló-Mora R, Antón J (2006) Microbial diversity in Maras Salterns, a hypersaline environment in the Peruvian Andes. Appl Environ Microbiol 72:3887-3895
33. McKay CP, Friedmann EI, Gómez-Silva B, Cáceres-Villanueva L, Andersen D, Landheim R (2003) Temperature and moisture conditions for life in the extreme arid region of the Atacama Desert: four years of observations including the El Niño of 1997-1998. Astrobiology 3:393-406
34. Michalski G, Böhlke JK, Thiemens MH (2004) Long term atmospheric deposition as the source of nitrate and other salts in the Atacama Desert, Chile: new evidence from mass-independent oxygen isotopic compositions. Geochim Cosmochim Acta 68:4023-4038
35. Muyzer G, Hottenträger S, Teske A, Wawer C (1996) Denaturating gradient gel electrophoresis of PCR-amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Akkermans ADL, et al. (eds) Molecular microbial ecology manual (3.4.4), Kluwer Academic Publishers, Dordrecht, Netherlands, pp 1-23
36. Navarro-González R, Rainey F, Molina P, et al. (2003) Mars-like soils in the Atacama Desert, Chile and the dry limit of microbial life. Science 302:1018-1021
37. Nienow JA (2009) Extremophiles: dry environments (including cryptoendoliths) In: Schaechter M (ed) Encyclopedia of microbiology (3rd edn). Elsevier, Oxford, pp 159-173
38. Nübel U, García-Pichel F, Muyzer G (1997) PCR primers to amplify 16s rRNA genes from cyanobacteria. Appl Environ Microb 63:3327-3332
39. Piñar G, Ripka K, Weber J, Sterflinger K (2009) The micro-biota of a sub-surface monument the medieval chapel of St. Virgil (Vienna, Austria). Int Biodeter Biodegr 63:851-859
40. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
41. Potts M (1994) Desiccation tolerance of prokaryotes. Microbiol Rev 58:755-805
42. Pueyo JJ, Chong G, Jensen A (2001) Neogene evaporites in desert volcanic environments: Atacama Desert, northern Chile. Sedimentology 48:1411-1431
43. Rothrock Jr MJ, García-Pichel F (2005) Microbial diversity of benthic mats along a tidal desiccation gradient. Environ Microbiol 7:593-601
44. Sahl JW, Pace NR, Spear C (2008) Comparative molecular analysis of endoevaporitic microbial communities. Appl Environ Microb 74: 6444-6446
45. Souza-Egipsy V, González-Toril E, Zettler E, Amaral-Zettler L, Aguilera A, Amils R (2008) Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Río Tinto (Huelva, Spain). Int Microbiol 11:251-260
46. Stan-Lotter H, McGenity TJ, Legat A, Denner EBM, Glaser K, Stetter KO, Wanner G (1999) Very similar strains of Halococcus salifodinae are found in geographically separated Permo-Triassic salt deposits. Microbiology 145:3565-3574
47. Thompson JD, Higgings DG, Gibson TJ (1997) ClustalX: improving the sensitivity of progressive multiple alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
48. Warren-Rhodes KA, Rhodes KL, Pointing SB, et al. (2006) Hypolithic cyanobacteria, dry limit of photosynthesis, and microbial ecology in the hyperarid Atacama Desert. Microb Ecol 52:389-398
49. Wierzchos J, Ascaso C, McKay CP (2006) Endolithic cyanobacteria in halite rocks from the hyperarid core of the Atacama Desert. Astrobiology 6:415-422
50. Wong FKY, Lau MCY, Lacap DC, Aitchison JC, Cowan DA, Pointing S (2009) Endolithic microbial colonization of limestone in a high-altitude environment. Microb Ecol 59:689-699