Identification of novel markers for stem-cell niche of Arabidopsis shoot apex

Gene Expression Patterns

Volumn 10, Issue 6, 2010, Pages 259-264

  Aggarwal, Pooja ^a   Yadav, Ram Kishor ^a   Reddy, G Venugopala ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

CLAVATA3 (CLV3); Gene expression; In situ hybridization; Markers; Shoot apical meristem; Stem cells; WUSCHEL (WUS)

Indexed keywords

APUM 10 PROTEIN; ARABIDOPSIS PROTEIN; ATLOG1 PROTEIN; BASIC DOMAIN 3 PROTEIN; CHOLINE KINASE; CYTOKININ OXIDASE DEHYDROGENASE 3; MONOCARBOXYLATE TRANSPORTER 2; RNA; UNCLASSIFIED DRUG; BIOLOGICAL MARKER; CLV3 PROTEIN, ARABIDOPSIS;

APICAL MERISTEM; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; EMBRYO DEVELOPMENT; GENE EXPRESSION; IN SITU HYBRIDIZATION; MUTANT; NONHUMAN; PLANT DEVELOPMENT; PRIORITY JOURNAL; SHOOT; STEM CELL NICHE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLANT; SEQUENCE HOMOLOGY;

ARABIDOPSIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BIOLOGICAL MARKERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT SHOOTS; SEQUENCE HOMOLOGY; STEM CELL NICHE;

EID: 78649503624     PISSN: 1567133X     EISSN: 18727298     Source Type: Journal    
DOI: 10.1016/j.gep.2010.05.004     Document Type: Article

References (35)

1. Anderson, G.H., Alvarez, N.D., Gilman, C., Jeffares, D.C., Trainor, V.C., Hanson, M.R., Veit, B., 2004. Diversification of genes encoding mei2-like RNA binding proteins in plants. Plant Mol. Biol. 54, 653-670.
2. Asaoka-Taguchi, M., Yamada, M., Nakamura, A., Hanyu, K., Kobayashi, S., 1999. Maternal Pumilio acts together with Nanos in germline development in Drosophila embryos. Nat. Cell. Biol. 1, 431-437.
3. Bilyeu, K.D., Cole, J.L., Laskey, J.G., Riekhof, W.R., Esparza, T.J., Kramer, M.D., Morris, R.O., 2001. Molecular and biochemical characterization of a cytokinin oxidase from maize. Plant Physiol. 125, 378-386.
4. Dodsworth, S., 2009. A diverse and intricate signalling network regulates stem cell fate in the shoot apical meristem. Dev. Biol.
5. Ferrandiz, C., Gu, Q., Martienssen, R., Yanofsky, M.F., 2000. Redundant regulation of meristem identity and plant architecture by fruitfull, apetala1 and cauliflower. Development 127, 725-734.
6. Fletcher, J.C., Brand, U., Running, M.P., Simon, R., Meyerowitz, E.M., 1999. Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science 283, 1911-1914.
7. Francischini, C.W., Quaggio, R.B., 2009. Molecular characterization of Arabidopsis thaliana PUF proteins - binding specificity and target candidates. FEBS J. 276, 5456-5470.
8. Green, K.A., Prigge, M.J., Katzman, R.B., Clark, S.E., 2005. Corona, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell. 17, 691-704.
9. Houba-Herin, N., Pethe, C., d'Alayer, J., Laloue, M., 1999. Cytokinin oxidase from Zea mays: purification, cDNA cloning and expression in moss protoplasts. Plant J. 17, 615-626.
10. Jenik, P.D., Irish, V.F., 2000. Regulation of cell proliferation by homeotic genes during Arabidopsis floral development. Development 127, 1267-1276.
11. Kaur, J., Sebastian, J., Siddiqi, I., 2006. The Arabidopsis-mei2-like genes play a role in meiosis and vegetative growth in Arabidopsis. Plant Cell 18, 545-559.
12. Kawakatsu, T., Itoh, J., Miyoshi, K., Kurata, N., Alvarez, N., Veit, B., Nagato, Y., 2006. Plastochron2 regulates leaf initiation and maturation in rice. Plant Cell 18, 612-625.
13. Kurakawa, T., Ueda, N., Maekawa, M., Kobayashi, K., Kojima, M., Nagato, Y., Sakakibara, H., Kyozuka, J., 2007. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature 445, 652-655.
14. Kuroha, T., Tokunaga, H., Kojima, M., Ueda, N., Ishida, T., Nagawa, S., Fukuda, H., Sugimoto, K., Sakakibara, H., 2009. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in arabidopsis. Plant Cell 1, 1-2.
15. Laux, T., Wurschum, T., Breuninger, H., 2004. Genetic regulation of embryonic pattern formation. Plant Cell 16 (Suppl.), S190-S202.
16. Leibfried, A., To, J.P., Busch, W., Stehling, S., Kehle, A., Demar, M., Kieber, J.J., Lohmann, J.U., 2005. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 438, 1172-1175.
17. Long, J.A., Moan, E.I., Medford, J.I., Barton, M.K., 1996. A member of the Knotted class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379, 66-69.
18. Mayer, K.F., Schoof, H., Haecker, A., Lenhard, M., Jurgens, G., Laux, T., 1998. Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell 95, 805-815.
19. Moore, F.L., Jaruzelska, J., Fox, M.S., Urano, J., Firpo, M.T., Turek, P.J., Dorfman, D.M., Pera, R.A., 2003. Human Pumilio-2 is expressed in embryonic stem cells and germ cells and interacts with DAZ (deleted in Azoospermia) and DAZ-like proteins. Proc. Natl. Acad. Sci. USA 100, 538-543.
20. Morris, R.O., Bilyeu, K.D., Laskey, J.G., Cheikh, N.N., 1999. Isolation of a gene encoding a glycosylated cytokinin oxidase from maize. Biochem. Biophys. Res. Commun. 255, 328-333.
21. Müller, R., Blechmann, A., Simon, R., 2008. The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1. Plant Cell 20, 934-946.
22. Ogawa, M., Shinohara, H., Sakagami, Y., Matsubayashi, Y., 2008. Arabidopsis CLV3 peptide directly binds CLV1 ectodomain. Science 319, 294.
23. Ohlrogge, J., Browse, J., 1995. Lipid biosynthesis. Plant Cell 7, 957-970.
24. Reddy, G.V., Meyerowitz, E.M., 2005. Stem-cell homeostasis and growth dynamics can be uncoupled in the Arabidopsis shoot apex. Science 310, 663-667.
25. Sakamoto, T., Kamiya, N., Ueguchi-Tanaka, M., Iwahori, S., Matsuoka, M., 2001. KNOX homeodomain protein directly suppresses the expression of a gibberellin biosynthetic gene in the tobacco shoot apical meristem. Genes Dev. 15, 581-590.
26. Schmulling, T., Werner, T., Riefler, M., Krupkova, E., Bartrina y Manns, I., 2003. Structure and function of cytokinin oxidase/dehydrogenase genes of maize, rice, Arabidopsis and other species. J. Plant Res. 116, 241-252.
27. Schoof, H., Lenhard, M., Haecker, A., Mayer, K.F., Jurgens, G., Laux, T., 2000. The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell 100, 635-644.
28. Spassov, D.S., Jurecic, R., 2003. The PUF family of RNA-binding proteins: does evolutionarily conserved structure equal conserved function? IUBMB Life 55, 359-366.
29. Tasseva, G., Richard, L., Zachowski, A., 2004. Regulation of phosphatidylcholine biosynthesis under salt stress involves choline kinases in Arabidopsis thaliana. FEBS Lett. 566, 115-120.
30. Veit, B., Briggs, S.P., Schmidt, R.J., Yanofsky, M.F., Hake, S., 1998. Regulation of leaf initiation by the terminal ear 1 gene of maize. Nature 393, 166-168.
31. Werner, T., Motyka, V., Strnad, M., Schmulling, T., 2001. Regulation of plant growth by cytokinin. Proc. Natl. Acad. Sci. USA 98, 10487-10492.
32. Werner, T., Motyka, V., Laucou, V., Smets, R., Van Onckelen, H., Schmulling, T., 2003. Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Plant Cell 15, 2532-2550.
33. Wickens, M., Bernstein, D.S., Kimble, J., Parker, R., 2002. A PUF family portrait: 30UTR regulation as a way of life. Trends Genet. 18, 150-157.
34. Yadav, R.K., Girke, T., Pasala, S., Xie, M., Reddy, G.V., 2009. Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc. Natl. Acad. Sci. USA 106, 4941-4946.
35. Yanai, O., Shani, E., Dolezal, K., Tarkowski, P., Sablowski, R., Sandberg, G., Samach, A., Ori, N., 2005. Arabidopsis KNOX1 proteins activate cytokinin biosynthesis. Curr. Biol. 15, 1566-1571.