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Volumn 5, Issue 11, 2010, Pages

The agaricus bisporus cox1 gene: The longest mitochondrial gene and the largest reservoir of mitochondrial group I introns

Author keywords

[No Author keywords available]

Indexed keywords

AGARICUS BISPORUS; ARTICLE; CONTROLLED STUDY; COX1 GENE; FUNGAL GENE; GAIN OF FUNCTION MUTATION; GENE FREQUENCY; GENE FUNCTION; GENE LOCATION; GENE MUTATION; GENE SEQUENCE; GENE STRUCTURE; GENE TRANSFER; GENETIC ORGANIZATION; INTRON; LOSS OF FUNCTION MUTATION; MITOCHONDRIAL GENETICS; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; UNINDEXED SEQUENCE; AGARICUS; AMINO ACID SEQUENCE; CHEMISTRY; CLASSIFICATION; CONFORMATION; DNA SEQUENCE; ENZYMOLOGY; FUNGUS; GENETICS; HORIZONTAL GENE TRANSFER; MITOCHONDRIAL GENOME; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

EID: 78649495423     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0014048     Document Type: Article
Times cited : (79)

References (38)
  • 1
    • 12344329187 scopus 로고    scopus 로고
    • The natural history of group I introns
    • Haugen P, Simon DM, Bhattacharya D (2005) The natural history of group I introns. Trends Genet 21(2): 111-119.
    • (2005) Trends Genet , vol.21 , Issue.2 , pp. 111-119
    • Haugen, P.1    Simon, D.M.2    Bhattacharya, D.3
  • 2
    • 0027305131 scopus 로고
    • Introns as mobile genetic elements
    • Lambowitz AM, Belfort M (1993) Introns as mobile genetic elements. Annu Rev Biochem 62: 587-622.
    • (1993) Annu Rev Biochem , vol.62 , pp. 587-622
    • Lambowitz, A.M.1    Belfort, M.2
  • 3
    • 0141814674 scopus 로고    scopus 로고
    • Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles
    • Nesbo CL, Doolittle WF (2003) Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles. Proc Natl Acad Sci U S A 100(19): 10806-10811.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.19 , pp. 10806-10811
    • Nesbo, C.L.1    Doolittle, W.F.2
  • 4
    • 2542455477 scopus 로고    scopus 로고
    • Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: Evidence for recent transfer of old introns
    • Sandegren L, Sjoberg BM (2004) Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns. J Biol Chem 279(21): 22218-22227.
    • (2004) J Biol Chem , vol.279 , Issue.21 , pp. 22218-22227
    • Sandegren, L.1    Sjoberg, B.M.2
  • 5
    • 33847192548 scopus 로고    scopus 로고
    • Mitochondrial introns: A critical view
    • Lang BF, Laforest MJ, Burger G (2007) Mitochondrial introns: a critical view. Trends Genet 23(3): 119-125.
    • (2007) Trends Genet , vol.23 , Issue.3 , pp. 119-125
    • Lang, B.F.1    Laforest, M.J.2    Burger, G.3
  • 7
    • 0024817653 scopus 로고
    • DNA sequence analysis of the 24.5 kilobase pair cytochrome oxidase subunit I mitochondrial gene from Podospora anserina: A gene with sixteen introns
    • Cummings DJ, Michel F, McNally KL (1989) DNA sequence analysis of the 24.5 kilobase pair cytochrome oxidase subunit I mitochondrial gene from Podospora anserina: a gene with sixteen introns. Curr Genet 16: 381-406.
    • (1989) Curr Genet , vol.16 , pp. 381-406
    • Cummings, D.J.1    Michel, F.2    McNally, K.L.3
  • 8
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
    • Oda K, Yamato K, Ohta E, Nakamura Y, Takemura M, et al. (1992) Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J Mol Biol 223: 1-7.
    • (1992) J Mol Biol , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takemura, M.5
  • 9
    • 0025001288 scopus 로고
    • Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing
    • Lambowitz AM, Perlman PS (1990) Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing. Trends Biochem Sci 15(11): 440-444.
    • (1990) Trends Biochem Sci , vol.15 , Issue.11 , pp. 440-444
    • Lambowitz, A.M.1    Perlman, P.S.2
  • 10
    • 0019127414 scopus 로고
    • Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron
    • Lazowska J, Jacq C, Slonimski PP (1980) Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron. Cell 22(2 Pt 2): 333-348.
    • (1980) Cell , vol.22 , Issue.2 PART 2 , pp. 333-348
    • Lazowska, J.1    Jacq, C.2    Slonimski, P.P.3
  • 11
    • 0037008840 scopus 로고    scopus 로고
    • Characterization of the I-Spom I endonuclease from fission yeast: Insights into the evolution of a group I intron-encoded homing endonuclease
    • Pellenz S, Harington A, Dujon B, Wolf K, Schafer B (2002) Characterization of the I-Spom I endonuclease from fission yeast: insights into the evolution of a group I intron-encoded homing endonuclease. J Mol Evol 55(3): 302-313.
    • (2002) J Mol Evol , vol.55 , Issue.3 , pp. 302-313
    • Pellenz, S.1    Harington, A.2    Dujon, B.3    Wolf, K.4    Schafer, B.5
  • 12
    • 0032487354 scopus 로고    scopus 로고
    • Molecular analysis of the split cox1 gene from the Basidiomycota Agrocybe aegerita: Relationship of its introns with homologous Ascomycota introns and divergence levels from common ancestral copies
    • Gonzalez P, Barroso G, Labarere J (1998) Molecular analysis of the split cox1 gene from the Basidiomycota Agrocybe aegerita: relationship of its introns with homologous Ascomycota introns and divergence levels from common ancestral copies. Gene 220(1-2): 45-53.
    • (1998) Gene , vol.220 , Issue.1-2 , pp. 45-53
    • Gonzalez, P.1    Barroso, G.2    Labarere, J.3
  • 13
    • 0028807582 scopus 로고
    • Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia
    • Vaughn JC, Mason MT, Sper-Whitis GL, Kuhlman P, Palmer JD (1995) Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia. J Mol Evol 41(5): 563-572.
    • (1995) J Mol Evol , vol.41 , Issue.5 , pp. 563-572
    • Vaughn, J.C.1    Mason, M.T.2    Sper-Whitis, G.L.3    Kuhlman, P.4    Palmer, J.D.5
  • 14
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfish gene
    • Goddard MR, Burt A (1999) Recurrent invasion and extinction of a selfish gene. Proc Natl Acad Sci U S A 96(24): 13880-13885.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.24 , pp. 13880-13885
    • Goddard, M.R.1    Burt, A.2
  • 15
    • 0033118256 scopus 로고    scopus 로고
    • Molecular gene organisation and secondary structure of the mitochondrial large subunit ribosomal RNA from the cultivated Basidiomycota Agrocybe aegerita: A 13 kb gene possessing six unusual nucleotide extensions and eight introns
    • Gonzalez P, Barroso G, Labarere J (1999) Molecular gene organisation and secondary structure of the mitochondrial large subunit ribosomal RNA from the cultivated Basidiomycota Agrocybe aegerita: a 13 kb gene possessing six unusual nucleotide extensions and eight introns. Nucleic Acids Res 27(7): 1754-1761.
    • (1999) Nucleic Acids Res , vol.27 , Issue.7 , pp. 1754-1761
    • Gonzalez, P.1    Barroso, G.2    Labarere, J.3
  • 16
    • 38949169204 scopus 로고    scopus 로고
    • Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer
    • Cusimano N, Zhang LB, Renner SS (2008) Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer. Mol Biol Evol 25(2): 265-276.
    • (2008) Mol Biol Evol , vol.25 , Issue.2 , pp. 265-276
    • Cusimano, N.1    Zhang, L.B.2    Renner, S.S.3
  • 17
    • 47649085332 scopus 로고    scopus 로고
    • Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria
    • Sanchez-Puerta MV, Cho Y, Mower JP, Alverson AJ, Palmer JD (2008) Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria. Mol Biol Evol 25(8): 1762-1777.
    • (2008) Mol Biol Evol , vol.25 , Issue.8 , pp. 1762-1777
    • Sanchez-Puerta, M.V.1    Cho, Y.2    Mower, J.P.3    Alverson, A.J.4    Palmer, J.D.5
  • 18
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert PD, Ratnasingham S, deWaard JR (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci 270(Suppl 1): S96-9.
    • (2003) Proc Biol Sci , vol.270 , Issue.SUPPL. 1
    • Hebert, P.D.1    Ratnasingham, S.2    Dewaard, J.R.3
  • 20
    • 77953171916 scopus 로고    scopus 로고
    • The mitochondrial genome of the wood-degrading basidiomycete Trametes cingulata
    • Haridas S, Gantt JS (2010) The mitochondrial genome of the wood-degrading basidiomycete Trametes cingulata. FEMS Microbiol Lett 308: 29-34.
    • (2010) FEMS Microbiol Lett , vol.308 , pp. 29-34
    • Haridas, S.1    Gantt, J.S.2
  • 21
    • 0027973379 scopus 로고
    • Evolution of mobile group I introns: Recognition of intron sequences by an intron-encoded endonuclease
    • Loizos N, Tillier ER, Belfort M (1994) Evolution of mobile group I introns: recognition of intron sequences by an intron-encoded endonuclease. Proc Natl Acad Sci U S A 91(25): 11983-11987.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.25 , pp. 11983-11987
    • Loizos, N.1    Tillier, E.R.2    Belfort, M.3
  • 22
    • 0343067128 scopus 로고    scopus 로고
    • Intronic GIY-YIG endonuclease gene in the mitochondrial genome of Podospora curvicolla: Evidence for mobility
    • Saguez C, Lecellier G, Koll F (2000) Intronic GIY-YIG endonuclease gene in the mitochondrial genome of Podospora curvicolla: evidence for mobility. Nucleic Acids Res 28(6): 1299-1306.
    • (2000) Nucleic Acids Res , vol.28 , Issue.6 , pp. 1299-1306
    • Saguez, C.1    Lecellier, G.2    Koll, F.3
  • 24
    • 50249139663 scopus 로고    scopus 로고
    • Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae
    • Wang X, Lavrov DV (2008) Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae. PLoS ONE 3: e2723.
    • (2008) PLoS ONE , vol.3
    • Wang, X.1    Lavrov, D.V.2
  • 25
    • 34248213649 scopus 로고    scopus 로고
    • Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals
    • Fukami H, Chen CA, Chiou CY, Knowlton N (2007) Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals. J Mol Evol 64(5): 591-600.
    • (2007) J Mol Evol , vol.64 , Issue.5 , pp. 591-600
    • Fukami, H.1    Chen, C.A.2    Chiou, C.Y.3    Knowlton, N.4
  • 27
    • 33750223973 scopus 로고    scopus 로고
    • Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria
    • Rot C, Goldfarb I, Ilan M, Huchon D (2006) Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria. BMC Evol Biol 6: 71.
    • (2006) BMC Evol Biol , vol.6 , pp. 71
    • Rot, C.1    Goldfarb, I.2    Ilan, M.3    Huchon, D.4
  • 28
    • 0030777960 scopus 로고    scopus 로고
    • Genetic analysis of the Chlamydomonas reinhardtii I-CreI mobile intron homing system in Escherichia coli
    • Seligman LM, Stephens KM, Savage JH, Monnat RJ, Jr. (1997) Genetic analysis of the Chlamydomonas reinhardtii I-CreI mobile intron homing system in Escherichia coli. Genetics 147: 1653-1664.
    • (1997) Genetics , vol.147 , pp. 1653-1664
    • Seligman, L.M.1    Stephens, K.M.2    Savage, J.H.3    Monnat Jr., R.J.4
  • 29
    • 33750329972 scopus 로고    scopus 로고
    • Reconstructing the early evolution of Fungi using a six-gene phylogeny
    • James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, et al. (2006) Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443(7113): 818-822.
    • (2006) Nature , vol.443 , Issue.7113 , pp. 818-822
    • James, T.Y.1    Kauff, F.2    Schoch, C.L.3    Matheny, P.B.4    Hofstetter, V.5
  • 32
    • 0002614402 scopus 로고
    • Efficient isolation of mitochondrial DNA from higher Basidiomycetes for restriction endonuclease analysis
    • Fukumasa-Nakai Y, Matsumoto T, Fukuda M (1992) Efficient isolation of mitochondrial DNA from higher Basidiomycetes for restriction endonuclease analysis. Rept Tottori Mycol Inst 30: 60-68.
    • (1992) Rept Tottori Mycol Inst , vol.30 , pp. 60-68
    • Fukumasa-Nakai, Y.1    Matsumoto, T.2    Fukuda, M.3
  • 33
    • 0000182975 scopus 로고
    • XL1-Blue: A high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection
    • Bullock WO, Fernandez JM, Stuart JM (1987) XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. Bio.Techniques 5: 376-337.
    • (1987) Bio.Techniques , vol.5 , pp. 376-337
    • Bullock, W.O.1    Fernandez, J.M.2    Stuart, J.M.3
  • 34
    • 0001564569 scopus 로고
    • Expression of dikaryon-specific and non-specific mRNAs of Schizophyllum commune in relation to environmental conditions and fruiting
    • Wessels JGH, Mulder GH, Springer J (1987) Expression of dikaryon-specific and non-specific mRNAs of Schizophyllum commune in relation to environmental conditions and fruiting. J Gen Microbiol 133: 2557-2561.
    • (1987) J Gen Microbiol , vol.133 , pp. 2557-2561
    • Wessels, J.G.H.1    Mulder, G.H.2    Springer, J.3
  • 36
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (2222): 4673-4680.
    • (1994) Nucleic Acids Res , vol.2222 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216(3): 585-610.
    • (1990) J Mol Biol , vol.216 , Issue.3 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 38
    • 0028146967 scopus 로고
    • A comparative database of group I intron structures
    • Damberger SH, Gutell RR (1994) A comparative database of group I intron structures. Nucleic Acids Res 22(17): 3508-3510.
    • (1994) Nucleic Acids Res , vol.22 , Issue.17 , pp. 3508-3510
    • Damberger, S.H.1    Gutell, R.R.2


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