메뉴 건너뛰기




Volumn 220, Issue 1-2, 1998, Pages 45-53

Molecular analysis of the split cox1 gene from the Basidiomycota Agrocybe aegerita: Relationship of its introns with homologous Ascomycota introns and divergence levels from common ancestral copies

Author keywords

Basidiomycota; Cox1 gene; Edible mushroom; Group I introns; Homing; Intronic ORF; Lateral transfer; Mitochondria; Sequence similarities

Indexed keywords

CYTOCHROME C OXIDASE; FUNGAL DNA; MITOCHONDRIAL DNA;

EID: 0032487354     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00421-1     Document Type: Article
Times cited : (32)

References (41)
  • 2
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • Baldauf S.L., Palmer J.D. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc. Natl. Acad. Sci. USA. 90:1993;11558-11562.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 3
    • 0010256014 scopus 로고
    • Molecular organization and heredity of the mitochondrial genome in Basidiomycetes
    • Barroso G., Labarère J. Molecular organization and heredity of the mitochondrial genome in Basidiomycetes. Mycoscience. 36:1995;135-142.
    • (1995) Mycoscience , vol.36 , pp. 135-142
    • Barroso, G.1    Labarère, J.2
  • 4
    • 0028964499 scopus 로고
    • Wide distribution of mitochondrial genome rearrangements in wild strains of the cultivated basidiomycete Agrocybe aegerita
    • Barroso G., Blésa S., Labarère J. Wide distribution of mitochondrial genome rearrangements in wild strains of the cultivated basidiomycete Agrocybe aegerita. Appl. Environ. Microbiol. 61:1995;1187-1193.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1187-1193
    • Barroso, G.1    Blésa, S.2    Labarère, J.3
  • 5
    • 0030908744 scopus 로고    scopus 로고
    • Plasticity of the mitochondrial genome in Podospora. Polymorphysm for 15 optional sequences; Group-I, group-II, intronic ORFs and an intergenic region
    • Belcour L., Rossignol M., Sellem C.H., Oldani C. Plasticity of the mitochondrial genome in Podospora. Polymorphysm for 15 optional sequences; group-I, group-II, intronic ORFs and an intergenic region. Curr. Genet. 31:1997;308-317.
    • (1997) Curr. Genet. , vol.31 , pp. 308-317
    • Belcour, L.1    Rossignol, M.2    Sellem, C.H.3    Oldani, C.4
  • 6
    • 85053347405 scopus 로고
    • Extrachromosomal DNA in fungi: Organization and function
    • In: Buck, K.W., (Ed.), CRC Press, Boca Raton, FL
    • Böckelmann, B., Osiewacz, H.D., Schmidt, F.R., Schulte, E., 1986. Extrachromosomal DNA in fungi: organization and function. In: Buck, K.W., (Ed.), Fungal Virology. CRC Press, Boca Raton, FL, pp. 237-283.
    • (1986) Fungal Virology , pp. 237-283
    • Böckelmann, B.1    Osiewacz, H.D.2    Schmidt, F.R.3    Schulte, E.4
  • 7
    • 0020340068 scopus 로고
    • Subunit 1 of cytochrome oxidase from Neurospora crassa: Nucleotide sequence of the coding gene and partial amino acid sequence of the protein
    • Burger G., Scriven C., Machleidt W., Werner S. Subunit 1 of cytochrome oxidase from Neurospora crassa: nucleotide sequence of the coding gene and partial amino acid sequence of the protein. EMBO J. 1:1982;1385-1391.
    • (1982) EMBO J. , vol.1 , pp. 1385-1391
    • Burger, G.1    Scriven, C.2    MacHleidt, W.3    Werner, S.4
  • 9
    • 0028908870 scopus 로고
    • A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum
    • Carbone I., Anderson J.B., Kohn L.M. A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum. Curr. Genet. 27:1995;166-176.
    • (1995) Curr. Genet. , vol.27 , pp. 166-176
    • Carbone, I.1    Anderson, J.B.2    Kohn, L.M.3
  • 10
    • 0028239826 scopus 로고
    • Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen
    • Castresana J., Lübben M., Saraste M., Higgins D.G. Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO. 13:1994;2516-2525.
    • (1994) EMBO , vol.13 , pp. 2516-2525
    • Castresana, J.1    Lübben, M.2    Saraste, M.3    Higgins, D.G.4
  • 11
    • 0022377423 scopus 로고
    • Probing fungal mitochondrial evolution with tRNAs
    • Cedergren R., Lang B.F. Probing fungal mitochondrial evolution with tRNAs. Biosystem. 18:1985;263-268.
    • (1985) Biosystem , vol.18 , pp. 263-268
    • Cedergren, R.1    Lang, B.F.2
  • 12
    • 0025358097 scopus 로고
    • The complete DNA sequence of the mitochondrial genome of Podospora anserina
    • Cummings D.J., McNally K.L., Domenico J.M., Matsuura E.T. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr. Genet. 17:1990;375-402.
    • (1990) Curr. Genet. , vol.17 , pp. 375-402
    • Cummings, D.J.1    McNally, K.L.2    Domenico, J.M.3    Matsuura, E.T.4
  • 13
    • 0028146967 scopus 로고
    • A comparative database of group I intron structures
    • Damberger S.H., Gutell R.R. A comparative database of group I intron structures. Nucleic Acids Res. 22:1994;3508-3510.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3508-3510
    • Damberger, S.H.1    Gutell, R.R.2
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies; An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies; an approach using the bootstrap. Evolution. 39:1985;783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0002614402 scopus 로고
    • Efficient isolation of mitochondrial DNA from higher Basidiomycetes for restriction endonuclease analysis
    • Fukumasa-Nakai Y., Matsumoto T., Fukuda M. Efficient isolation of mitochondrial DNA from higher Basidiomycetes for restriction endonuclease analysis. Rept. Tottori Mycol. Inst. 30:1992;60-68.
    • (1992) Rept. Tottori Mycol. Inst. , vol.30 , pp. 60-68
    • Fukumasa-Nakai, Y.1    Matsumoto, T.2    Fukuda, M.3
  • 16
    • 0031018733 scopus 로고    scopus 로고
    • DNA sequence and secondary strucrture of the mitochondrial small subunit ribosomal RNA coding region including a group-IC2 intron from the cultivated Basidiomycete Agrocybe aegerita
    • Gonzalez P., Barroso G., Labarère J. DNA sequence and secondary strucrture of the mitochondrial small subunit ribosomal RNA coding region including a group-IC2 intron from the cultivated Basidiomycete Agrocybe aegerita. Gene. 184:1997;55-63.
    • (1997) Gene , vol.184 , pp. 55-63
    • Gonzalez, P.1    Barroso, G.2    Labarère, J.3
  • 17
    • 0024234855 scopus 로고
    • Clustal V: A package for performing multiple sequence alignment on a micro computer
    • Higgins D.G., Sharp P.M. Clustal V: a package for performing multiple sequence alignment on a micro computer. Gene. 73:1988;237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 18
    • 0024598146 scopus 로고
    • Fast and sensitive multiple alignment sequence on a microcomputer
    • Higgins D.G., Sharp P.M. Fast and sensitive multiple alignment sequence on a microcomputer. CABIOS. 5:1989;151-153.
    • (1989) CABIOS , vol.5 , pp. 151-153
    • Higgins, D.G.1    Sharp, P.M.2
  • 19
    • 0000265192 scopus 로고
    • The mitochondrial DNAs of Agaricus: Heterogeneity in A. bitorquis and homogeneity in A. brunnescens
    • Hintz W.E.A., Mohan M., Anderson J.B., Horgen P.A. The mitochondrial DNAs of Agaricus: heterogeneity in A. bitorquis and homogeneity in A. brunnescens. Curr. Genet. 9:1985;127-132.
    • (1985) Curr. Genet. , vol.9 , pp. 127-132
    • Hintz, W.E.A.1    Mohan, M.2    Anderson, J.B.3    Horgen, P.A.4
  • 20
    • 0022399493 scopus 로고
    • An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene
    • Jacquier A., Dujon B. An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene. Cell. 41:1985;383-394.
    • (1985) Cell , vol.41 , pp. 383-394
    • Jacquier, A.1    Dujon, B.2
  • 21
    • 0030131112 scopus 로고    scopus 로고
    • Phylogeny of the genus Hegeter (Tenebrionidae, Coleoptera) and its colonization of the Canary islands deduced from Cytochrome Oxidase I mitochondrial DNA sequence
    • Juan C., Oromi P., Hewitt G.M. Phylogeny of the genus Hegeter (Tenebrionidae, Coleoptera) and its colonization of the Canary islands deduced from Cytochrome Oxidase I mitochondrial DNA sequence. Heredity. 76:1996;392-403.
    • (1996) Heredity , vol.76 , pp. 392-403
    • Juan, C.1    Oromi, P.2    Hewitt, G.M.3
  • 23
    • 84934130135 scopus 로고
    • Sequence of the mitochondrial DNA, arrangement of genes and processing of their transcripts in Schizosaccharomyces pombe
    • De Gruyter, Berlin
    • Lang, B.F., Ahne, F., Distler, S., Zrinkl, H., Kaudewitz, F., Wolf, K., 1983. Sequence of the mitochondrial DNA, arrangement of genes and processing of their transcripts in Schizosaccharomyces pombe. In: Mitochondria 1983: Nucleo-mitochondrial Interactions. De Gruyter, Berlin, pp. 313-329.
    • (1983) In: Mitochondria 1983: Nucleo-mitochondrial Interactions , pp. 313-329
    • Lang, B.F.1    Ahne, F.2    Distler, S.3    Zrinkl, H.4    Kaudewitz, F.5    Wolf, K.6
  • 24
    • 0021886114 scopus 로고
    • The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has a intron closely related to the first two introns in the Saccharomyces cerevisiae coxI gene
    • Lang B.F., Ahne F., Bonen L. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has a intron closely related to the first two introns in the Saccharomyces cerevisiae coxI gene. J. Mol. Biol. 184:1985;353-366.
    • (1985) J. Mol. Biol. , vol.184 , pp. 353-366
    • Lang, B.F.1    Ahne, F.2    Bonen, L.3
  • 26
    • 0022761190 scopus 로고
    • Genetic exchanges between bacteriophage T4 and filamentous fungi?
    • Michel F., Dujon B. Genetic exchanges between bacteriophage T4 and filamentous fungi? Cell. 46:1986;323.
    • (1986) Cell , vol.46 , pp. 323
    • Michel, F.1    Dujon, B.2
  • 27
    • 0026538126 scopus 로고
    • The mitochondrial genome of the Basidiomycete Agrocybe aegerita: Molecular cloning, physical mapping and gene location
    • Moulinier T., Barroso G., Labarère J. The mitochondrial genome of the Basidiomycete Agrocybe aegerita: molecular cloning, physical mapping and gene location. Curr. Genet. 21:1992;499-505.
    • (1992) Curr. Genet. , vol.21 , pp. 499-505
    • Moulinier, T.1    Barroso, G.2    Labarère, J.3
  • 28
    • 0000545412 scopus 로고
    • A robust fungal phylogeny using the mitochondrially encoded NAD5 protein sequence
    • Paquin B., Roewer I., Wang Z., Lang B.F. A robust fungal phylogeny using the mitochondrially encoded NAD5 protein sequence. Can. J. Bot. 73:1995;S180-S185.
    • (1995) Can. J. Bot. , vol.73
    • Paquin, B.1    Roewer, I.2    Wang, Z.3    Lang, B.F.4
  • 29
    • 0029047959 scopus 로고
    • Intron-encoded open reading frame of the GIY-YIG sub-class in a plastid gene
    • Paquin B., O'Kelly C.J., Lang B.F. Intron-encoded open reading frame of the GIY-YIG sub-class in a plastid gene. Curr. Genet. 28:1995;97-99.
    • (1995) Curr. Genet. , vol.28 , pp. 97-99
    • Paquin, B.1    O'Kelly, C.J.2    Lang, B.F.3
  • 30
    • 0030993742 scopus 로고    scopus 로고
    • The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression
    • Paquin B., Laforest M.J., Forget L., Roewer I., Wang Z., Longcore J., Lang B.F. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr. Genet. 31:1997;380-395.
    • (1997) Curr. Genet. , vol.31 , pp. 380-395
    • Paquin, B.1    Laforest, M.J.2    Forget, L.3    Roewer, I.4    Wang, Z.5    Longcore, J.6    Lang, B.F.7
  • 31
    • 0024098642 scopus 로고
    • Nucleotide sequence of the mitochondrial COIII gene of Schizophyllum commune
    • Phelps L.G., Burke J.M., Ulrich R.C., Novotny C.P. Nucleotide sequence of the mitochondrial COIII gene of Schizophyllum commune. Curr. Genet. 14:1988;401-403.
    • (1988) Curr. Genet. , vol.14 , pp. 401-403
    • Phelps, L.G.1    Burke, J.M.2    Ulrich, R.C.3    Novotny, C.P.4
  • 32
    • 0000550148 scopus 로고
    • Schizophyllum commune
    • In: King, R.C., (Ed.), Plenum Press, New York
    • Raper, J.R., Hoffman, R.M., 1974. Schizophyllum commune. In: King, R.C., (Ed.), Handbook of Genetics. Plenum Press, New York, pp. 597-626.
    • (1974) Handbook of Genetics , pp. 597-626
    • Raper, J.R.1    Hoffman, R.M.2
  • 33
    • 85082788826 scopus 로고
    • Isolation of transcripts preferentially expressed during fruit body primordia differentiation in the Basidiomycete Agrocybe aegerita
    • Salvado J.C., Labarère J. Isolation of transcripts preferentially expressed during fruit body primordia differentiation in the Basidiomycete Agrocybe aegerita. Curr. Genet. 2:1994;1135-1137.
    • (1994) Curr. Genet. , vol.2 , pp. 1135-1137
    • Salvado, J.C.1    Labarère, J.2
  • 35
    • 0028287564 scopus 로고
    • The in vivo use of alternate 3′-splice sites in group-I introns
    • Sellem C.H., Belcour L. The in vivo use of alternate 3′-splice sites in group-I introns. Nucleic Acids Res. 22:1994;1135-1137.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1135-1137
    • Sellem, C.H.1    Belcour, L.2
  • 36
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern E. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Biol. Chem. 98:1975;503-517.
    • (1975) J. Biol. Chem. , vol.98 , pp. 503-517
    • Southern, E.1
  • 37
    • 0029561172 scopus 로고
    • Phylogenetic utility of the mitochondrial cytochrome oxidase gene: Molecular evolution of the Drosophila buzzatii species complex
    • Spicer G.S. Phylogenetic utility of the mitochondrial cytochrome oxidase gene: molecular evolution of the Drosophila buzzatii species complex. J. Mol. Evol. 41:1995;749-759.
    • (1995) J. Mol. Evol. , vol.41 , pp. 749-759
    • Spicer, G.S.1
  • 38
    • 0031004120 scopus 로고    scopus 로고
    • The cox I gene from Euglena gracilis: A protist mitochondrial gene without introns and genetic code modifications
    • Teissier L.H., Van der speck H., Gualberto J.M., Grienenberger J.M. The cox I gene from Euglena gracilis: a protist mitochondrial gene without introns and genetic code modifications. Curr. Genet. 31:1997;208-213.
    • (1997) Curr. Genet. , vol.31 , pp. 208-213
    • Teissier, L.H.1    Van Der Speck, H.2    Gualberto, J.M.3    Grienenberger, J.M.4
  • 39
    • 0028807582 scopus 로고
    • Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric cox1 gene of Peperomia
    • Vaughn J.C., Mason M.T., Sper-whitis G.L., Kuhlman P., Palmer J.F. Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric cox1 gene of Peperomia. J. Mol. Evol. 41:1995;563-572.
    • (1995) J. Mol. Evol. , vol.41 , pp. 563-572
    • Vaughn, J.C.1    Mason, M.T.2    Sper-Whitis, G.L.3    Kuhlman, P.4    Palmer, J.F.5
  • 40
    • 0027172613 scopus 로고
    • Mitochondrial genes in the colorless alga Prototheca wickeramii ressemble plant gene in their exons but fungal genes in their introns
    • Wolff G., Burger G., Lang B.F., Kück U. Mitochondrial genes in the colorless alga Prototheca wickeramii ressemble plant gene in their exons but fungal genes in their introns. Nucleic Acids Res. 21:1993;719-726.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 719-726
    • Wolff, G.1    Burger, G.2    Lang, B.F.3    Kück, U.4
  • 41
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanish-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33:1985;103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanish-Perron, C.1    Vieira, J.2    Messing, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.