Characterizing the embryonic transcriptome of the snail iljanassa

Integrative and Comparative Biology

Volumn 50, Issue 5, 2010, Pages 768-777

  Lambert, J David ^a   Chan, Xin Yi ^a   Spiecker, Barbara ^a,b   Sweet, Hyla C ^a,b  

^a UNIVERSITY OF ROCHESTER   (United States)

^b ROCHESTER INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ANIMAL; ANIMAL EMBRYO; CONFERENCE PAPER; EMBRYO DEVELOPMENT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HOMEOBOX; PHYSIOLOGY; PRENATAL DEVELOPMENT; SNAIL;

ANIMALS; EMBRYO, NONMAMMALIAN; EMBRYONIC DEVELOPMENT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, HOMEOBOX; SNAILS; TRANSCRIPTION FACTORS;

GASTROPODA; ILYANASSA; ILYANASSA OBSOLETA;

EID: 78649444508     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/icq121     Document Type: Conference Paper

References (39)

1. Adams MD, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-95. (Pubitemid 30177013)
2. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information. Computer Science and Biology: Proceedings of the German Conference on Bioinformatics (GCB) 99, 45-56.
3. The Caenorhabditis elegans Genome Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012-18.
4. Curtis LA. 2003. Tenure of individual larval trematode infections in an estuarine gastropod. J Mar Biol Assoc 83:1047-51. (Pubitemid 37353777)
5. Curtis LA, Barse AM. 1990. Sexual anomalies in the estuarine snail Ilyanassa-Obsoleta-imposex in females and associated phenomena in males. Oecologia 84:371-5.
6. Dehal P, et al. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298:2157-67. (Pubitemid 35471235)
7. Denes AS, Jekely G, Steinmetz PR, Raible F, Snyman H, Prud'homme B, Ferrier DE, Balavoine G, Arendt D. 2007. Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria. Cell 129:277-88. (Pubitemid 46584732)
8. Dickinson AJG, Croll RP. 2003. Development of the larval nervous system of the gastropod Ilyanassa obsoleta. J Comp Neurol 466:197-218. (Pubitemid 37255229)
9. Dunn CW, et al. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452:745-9. (Pubitemid 351522763)
10. Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-85. (Pubitemid 28177229)
11. Gharbiah M, Cooley J, Leise EM, Nakamoto A, Rabinowitz JS, Lambert JD, Nagy LM. 2008. The snail Ilyanassa: a reemerging model for studies in development. In: Crotty DA, Gann A, editors. Emerging model organisms, Vol. 1. Cold Spring Harbor, NY: Cold Spring Harbor Press.
12. Gooding MP, LeBlanc GA. 2004. Seasonal variation in the regulation of testosterone levels in the eastern mud snail (Ilyanassa obsoleta). Invertebr Biol 123:237-43. (Pubitemid 39474460)
13. Haider S, Ballester B, Smedley D, Zhang J, Rice P, Kasprzyk A. 2009. BioMart Central Portal-unified access to biological data. Nucleic Acids Res 37:W23-7.
14. Henry JJ, Martindale MQ. 1999. Conservation and innovation in spiralian development. Hydrobiologia 402:255-65.
15. Hong SK, Kim CH, Yoo KW, Kim HS, Kudoh T, Dawid IB, Huh TL. 2002. Isolation and expression of a novel neuron-specific onecut homeobox gene in zebrafish. Mech Dev 112:199-202. (Pubitemid 34163237)
16. Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH. 2006. Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development. Dev Biol 300:74-89. (Pubitemid 44830128)
17. Huang X, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Res 9:868-77. (Pubitemid 29488446)
18. Hyman LH. 1967. The invertebrates, VI: Mollusca I. New York: McGraw-Hill.
19. Kelaher BP, Levinton JS, Hoch JM. 2003. Foraging by the mud snail, Ilyanassa obsoleta (Say), modulates spatial variation in benthic community structure. J Exp Mar Bio Ecol 292:139-57. (Pubitemid 37056748)
20. Kingsley EP, Chan XY, Duan Y, Lambert JD. 2007. Widespread RNA segregation in a spiralian embryo. Evol Dev 9:527-39. (Pubitemid 350045751)
21. Lambert JD. 2009. Patterning the spiralian embryo: insights from Ilyanassa. In: Jeffery WR, editor. Current topics in developmental biology, Vol. 86. Burlington: Academic Press. p. 107-33.
22. Lambert JD. 2010. Developmental patterns in spiralian embryos. Curr Biol 20:R72-7.
23. Lambert JD, Nagy LM. 2002. Asymmetric inheritance of centrosomally localized mRNAs during embryonic cleavages. Nature 420:682-6. (Pubitemid 36764501)
24. Landry C, Clotman F, Hioki T, Oda H, Picard JJ, Lemaigre FP, Rousseau GG. 1997. HNF-6 is expressed in endoderm derivatives and nervous system of the mouse embryo and participates to the cross-regulatory network of liver-enriched transcription factors. Dev Biol 192:247-57. (Pubitemid 28066931)
25. Larkin MA, et al. 2007. Clustal and ClustalX version 2. Bioinformatics 23:2947-48.
26. Lin MF, Leise EM. 1996. Gangliogenesis in the prosobranch gastropod Ilyanassa obsoleta. J Comp Neurol 374:180-93. (Pubitemid 26357184)
27. Lowe CJ, et al. 2006. Dorsoventral patterning in hemichordates: insights into early chordate evolution. PLoS Biol 4:e291.
28. Marchler-Bauer A, et al. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37:D205-10.
29. Meyer NP, Seaver EC. 2009. Neurogenesis in an annelid: characterization of brain neural precursors in the polychaete Capitella sp. I. Dev Biol 335:237-52.
30. Moomjian L, Nystrom S, Rittschof D. 2003. Behavioral responses of sexually active mud snails: Kariomones and pheromones. J Chem Ecol 29:497-501. (Pubitemid 36389863)
31. Nguyen DN, Rohrbaugh M, Lai Z. 2000. The Drosophila homolog of Onecut homeodomain proteins is a neuralspecific transcriptional activator with a potential role in regulating neural differentiation. Mech Dev 97:57-72.
32. Oberdorster E, McClellan-Green P. 2000. The neuropeptide APGWamide induces imposer in the mud snail, Ilyanassa obsoleta. Peptides 21:1323-30.
33. Oberdorster E, McClellan-Green P. 2002. Mechanisms of imposex induction in the mud snail, Ilyanassa obsoleta: TBT as a neurotoxin and aromatase inhibitor. Mar Environ Res 54:715-18. (Pubitemid 35286500)
34. Otim O, Amore G, Minokawa T, McClay DR, Davidson EH. 2004. SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis. Dev Biol 273:226-43. (Pubitemid 39140900)
35. Raven CP. 1966. Morphogenesis: the analysis of molluscan development. Oxford: Pergamon Press.
36. Riechmann JL, et al. 2000. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290:2105-10. (Pubitemid 32001583)
37. Rittschof D, Sawardecker P, Petry C. 2002. Chemical mediation of egg capsule deposition by mud snails. J Chem Ecol 28:2257-69. (Pubitemid 35429873)
38. Sasakura Y, Makabe KW. 2001. A gene encoding a new ONECUT class homeodomain protein in the ascidian Halocynthia roretzi functions in the differentiation and specification of neural cells in ascidian embryogenesis. Mech Dev 104:37-48. (Pubitemid 32549762)
39. Sodergren E, et al. 2006. The genome of the sea urchin Strongylocentrotus purpuratus. Science 314:941-52. (Pubitemid 44749930)