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Volumn 76, Issue 5, 2010, Pages 352-361

Estimating unbiased haplotype frequencies from stem cell donor samples typed at heterogeneous resolutions: A practical study based on over 1 million German donors

Author keywords

Donor registries; Gene frequency; Haplotypes; Hematopoietic stem cell transplantation; Human leukocyte antigen alleles

Indexed keywords

HLA ANTIGEN;

EID: 78649375945     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2010.01518.x     Document Type: Article
Times cited : (36)

References (29)
  • 1
    • 78649350972 scopus 로고    scopus 로고
    • MHC-Linked Diseases. Accessed 11 June 2010
    • MHC-Linked Diseases. 2007. http://www.sanger.ac.uk/HGP/Chr6/MHC/diseases.shtml. Accessed 11 June 2010.
    • (2007)
  • 2
    • 33746166392 scopus 로고    scopus 로고
    • Predicting population coverage of T-cell epitope-based diagnostics and vaccines
    • Accessed 11 June 2010
    • Bui HH, Sidney J, Dinh K, Southwood S, Newman MJ, Sette A. Predicting population coverage of T-cell epitope-based diagnostics and vaccines. BMC Bioinformatics 2006: 7: 153. http://dx.doi.org/10.1186/1471-2105-7-153. Accessed 11 June 2010.
    • (2006) BMC Bioinformatics , vol.7 , pp. 153
    • Bui, H.H.1    Sidney, J.2    Dinh, K.3    Southwood, S.4    Newman, M.J.5    Sette, A.6
  • 4
    • 0038015175 scopus 로고    scopus 로고
    • Maximizing optimal hematopoietic stem cell donor selection from registries of unrelated adult volunteers
    • Hurley CK, Vina MF, Setterholm M. Maximizing optimal hematopoietic stem cell donor selection from registries of unrelated adult volunteers. Tissue Antigens 2003: 61: 415-24.
    • (2003) Tissue Antigens , vol.61 , pp. 415-424
    • Hurley, C.K.1    Vina, M.F.2    Setterholm, M.3
  • 5
    • 78649347528 scopus 로고    scopus 로고
    • Bone Marrow Donors Worldwide. Accessed 11 June 2010
    • Bone Marrow Donors Worldwide. 2007. Total Number of Stem Cell Donors and Cord Blood Units. http://www.bmdw.org/index.php?id=statistics_all. Accessed 11 June 2010.
    • (2007) Total Number of Stem Cell Donors and Cord Blood Units
  • 6
    • 49749127367 scopus 로고    scopus 로고
    • ZKRD GmbH. Accessed 11 June 2010
    • ZKRD GmbH. 2007. Annual Report 2004-2006. http://www.zkrd.de/de/_pdf/Jahresbericht_2004_2006.pdf. Accessed 11 June 2010.
    • (2007) Annual Report 2004-2006
  • 7
    • 49449115517 scopus 로고    scopus 로고
    • National marrow donor program HLA matching guidelines for unrelated adult donor hematopoietic cell transplants
    • Bray RA, Hurley CK, Kamani NR et al. National marrow donor program HLA matching guidelines for unrelated adult donor hematopoietic cell transplants. Biol Blood Marrow Transplant 2008: 14 (Suppl 9): 45-53.
    • (2008) Biol Blood Marrow Transplant , vol.14 , Issue.SUPPL 9 , pp. 45-53
    • Bray, R.A.1    Hurley, C.K.2    Kamani, N.R.3
  • 8
    • 0035676688 scopus 로고    scopus 로고
    • Second German consensus on immunogenetic donor search for allotrans-plantation of hematopoietic stem cells
    • Ottinger HD, Müller CR, Goldmann SF et al. Second German consensus on immunogenetic donor search for allotrans-plantation of hematopoietic stem cells. Ann Hematol 2001: 80: 706-14.
    • (2001) Ann Hematol , vol.80 , pp. 706-714
    • Ottinger, H.D.1    Müller, C.R.2    Goldmann, S.F.3
  • 9
    • 78649360818 scopus 로고    scopus 로고
    • Deutsche Gesellschaft für Immungenetik (DGI). Accessed 2008
    • Deutsche Gesellschaft für Immungenetik (DGI). 2005. http://www.dgiev.de/data/KonsensusVersionAugustFinal2005.pdf. Accessed 2008.
    • (2005)
  • 10
    • 10044232695 scopus 로고    scopus 로고
    • Algorithms for inferring haplotypes
    • Niu T. Algorithms for inferring haplotypes. Genet Epidemiol 2004: 27: 334-47.
    • (2004) Genet Epidemiol , vol.27 , pp. 334-347
    • Niu, T.1
  • 11
    • 27544473944 scopus 로고    scopus 로고
    • A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
    • Salem R, Wessel J, Schork N. A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Hum Genomics 2005: 2: 39-66.
    • (2005) Hum Genomics , vol.2 , pp. 39-66
    • Salem, R.1    Wessel, J.2    Schork, N.3
  • 13
    • 0037237342 scopus 로고    scopus 로고
    • Gene and haplotype frequencies for the loci HLA-A, HLA-B, and HLA-DR based on over 13,000 german blood donors
    • Müller CR, Ehninger G, Goldmann SF. Gene and haplotype frequencies for the loci HLA-A, HLA-B, and HLA-DR based on over 13,000 german blood donors. Hum Immunol 2003: 64: 137-51.
    • (2003) Hum Immunol , vol.64 , pp. 137-151
    • Müller, C.R.1    Ehninger, G.2    Goldmann, S.F.3
  • 14
    • 37849013372 scopus 로고    scopus 로고
    • Estimation of HLA-A, -B, -DRB1 haplotype frequencies using mixed resolution data from a National Registry with selective retyping of volunteers
    • Kollman C, Maiers M, Gragert L, et al. Estimation of HLA-A, -B, -DRB1 haplotype frequencies using mixed resolution data from a National Registry with selective retyping of volunteers. Hum Immunol 2007: 68: 950-8.
    • (2007) Hum Immunol , vol.68 , pp. 950-958
    • Kollman, C.1    Maiers, M.2    Gragert, L.3
  • 15
    • 0002426291 scopus 로고
    • The estimation of gene frequencies in a random-mating population
    • Ceppellini R, Siniscalco M, Smith C. The estimation of gene frequencies in a random-mating population. Ann Hum Genet 1955: 20: 97-115.
    • (1955) Ann Hum Genet , vol.20 , pp. 97-115
    • Ceppellini, R.1    Siniscalco, M.2    Smith, C.3
  • 16
    • 13444282209 scopus 로고    scopus 로고
    • HLA Dictionary 2004 summary of HLA-A, -B, -C, -DRB1/3/4/5, -DQB1 alleles and their association with serologically defined HLA-A, -B, -C, -DR, and -DQ antigens
    • Schreuder G, Hurley CK, Marsh SGE, et al. HLA Dictionary 2004: summary of HLA-A, -B, -C, -DRB1/3/4/5, -DQB1 alleles and their association with serologically defined HLA-A, -B, -C, -DR, and -DQ antigens. Hum Immunol 2005: 66: 170-210.
    • (2005) Hum Immunol , vol.66 , pp. 170-210
    • Schreuder, G.1    Hurley, C.K.2    Marsh, S.G.E.3
  • 17
    • 78649336646 scopus 로고    scopus 로고
    • Anthony Nolan Research Institute. Accessed 11 June 2010
    • Anthony Nolan Research Institute. 2010. HLA Nomenclature in WMDA file format. http://hla. alleles.org/wmda/index.html. Accessed 11 June 2010.
    • (2010) HLA Nomenclature in WMDA file format
  • 18
    • 0028811072 scopus 로고
    • Discordant patterns of linkage disequilibrium of the peptide-transporter loci within the HLA class II region
    • Klitz W, Stephens JC, Grote MN, Carrington M. Discordant patterns of linkage disequilibrium of the peptide-transporter loci within the HLA class II region. Am J Hum Genet 1995: 57: 1436-44.
    • (1995) Am J Hum Genet , vol.57 , pp. 1436-1444
    • Klitz, W.1    Stephens, J.C.2    Grote, M.N.3    Carrington, M.4
  • 19
    • 34548472899 scopus 로고    scopus 로고
    • High-resolution HLA alleles and haplotypes in the United States population
    • Maiers M, Gragert L, Klitz W. High-resolution HLA alleles and haplotypes in the United States population. Hum Immunol 2007: 68: 779-88.
    • (2007) Hum Immunol , vol.68 , pp. 779-788
    • Maiers, M.1    Gragert, L.2    Klitz, W.3
  • 20
    • 0002995603 scopus 로고
    • Population analysis of HLA-A,B,C,DR, and other genetic markers
    • Terasaki PI, ed. Los Angeles: UCLA Tissue Typing Laboratory
    • Baur MP, Danilovs JF. Population analysis of HLA-A,B,C,DR, and other genetic markers. In: Terasaki PI, ed. Histocompatibility Testing. Los Angeles: UCLA Tissue Typing Laboratory, 1980, 955-89.
    • (1980) Histocompatibility Testing , pp. 955-989
    • Baur, M.P.1    Danilovs, J.F.2
  • 22
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 1995: 12: 921-7.
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 23
    • 6444239772 scopus 로고    scopus 로고
    • Handling missing values in population data: consequences for maximum likelihood estimation of haplotype frequencies
    • Gourraud PA, Genin E, Cambon-Thomsen A. Handling missing values in population data: consequences for maximum likelihood estimation of haplotype frequencies. Eur J Hum Genet 2004: 12: 805-12.
    • (2004) Eur J Hum Genet , vol.12 , pp. 805-812
    • Gourraud, P.A.1    Genin, E.2    Cambon-Thomsen, A.3
  • 24
    • 78649353257 scopus 로고    scopus 로고
    • Facts and fiction in the calculation of genetic distances [abstract]
    • Eberhard HP, Gourraud PA, Müller CR. Facts and fiction in the calculation of genetic distances [abstract]. Tissue Antigens 2008: 72: 264-5.
    • (2008) Tissue Antigens , vol.72 , pp. 264-265
    • Eberhard, H.P.1    Gourraud, P.A.2    Müller, C.R.3
  • 25
    • 0029875565 scopus 로고    scopus 로고
    • Validation of large data sets, an essential prerequisite for data analysis: an analytical survey of the Bone Marrow Donors Worldwide
    • Schipper R, Oudshoorn M, D'Amaro J, et al. Validation of large data sets, an essential prerequisite for data analysis: an analytical survey of the Bone Marrow Donors Worldwide. Tissue Antigens 1996: 47: 169-78.
    • (1996) Tissue Antigens , vol.47 , pp. 169-178
    • Schipper, R.1    Oudshoorn, M.2    D'Amaro, J.3
  • 26
    • 34250176823 scopus 로고    scopus 로고
    • World Marrow Donor Association guidelines for use of HLA nomenclature and its validation in the data exchange among hematopoietic stem cell donor registries and cord blood banks
    • Bochtler W, Maiers M, Oudshoorn M, et al. World Marrow Donor Association guidelines for use of HLA nomenclature and its validation in the data exchange among hematopoietic stem cell donor registries and cord blood banks. Bone Marrow Transplant 2007: 39: 737-41.
    • (2007) Bone Marrow Transplant , vol.39 , pp. 737-741
    • Bochtler, W.1    Maiers, M.2    Oudshoorn, M.3
  • 27
    • 77952430545 scopus 로고    scopus 로고
    • HLACORE - a comprehensive low level HLA library for programmers
    • Bochtler W, Beth M, Marsh SGE, Müller CR. HLACORE - a comprehensive low level HLA library for programmers. Hum Immunol 2005: 66 (8 Suppl 1): 49-49. http://www.sciencedirect.com/humimm/article/B6T3B-4H9P27M-37/1/080e698bd73910c7e8a1195422a76c8e.
    • (2005) Hum Immunol , vol.66 , Issue.8 SUPPL 1 , pp. 49-49
    • Bochtler, W.1    Beth, M.2    Marsh, S.G.E.3    Müller, C.R.4
  • 28
    • 32444450670 scopus 로고    scopus 로고
    • Team RDC. R: A Language and Environment for Statistical Computing. Vienna, Accessed 11 June 2010
    • Team RDC. R: A Language and Environment for Statistical Computing. Vienna, 2009. R Foundation for Statistical Computing http://www.R-project.org. Accessed 11 June 2010.
    • (2009) R Foundation for Statistical Computing
  • 29
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • Fallin D, Schork NJ. Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am J Hum Genet 2000: 67: 947-59.
    • (2000) Am J Hum Genet , vol.67 , pp. 947-959
    • Fallin, D.1    Schork, N.J.2


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