메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

A microbial detection array (MDA) for viral and bacterial detection

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM DETECTION; DNA MICROARRAY; GENE SEQUENCE; MICROBIAL DETECTION ARRAY; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; VIRUS DETECTION; VIRUS GENOME; ALGORITHM; ANIMAL; BACTERIUM; CATTLE; DNA PROBE; ENTROPY; FECES; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; MICROARRAY ANALYSIS; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; SPUTUM; STATISTICAL MODEL; VIROLOGY; VIRUS;

EID: 78649316993     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-668     Document Type: Article
Times cited : (113)

References (30)
  • 1
    • 64149083137 scopus 로고    scopus 로고
    • Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach
    • 10.1371/journal.pone.0004219, 2625441, 19156205
    • Nakamura S, Yang C-S, Sakon N, Ueda M, Tougan T, Yamashita A, Goto N, Takahashi K, Yasunaga T, Ikuta K, et al. Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach. PLoS ONE 2009, 4(1):e4219. 10.1371/journal.pone.0004219, 2625441, 19156205.
    • (2009) PLoS ONE , vol.4 , Issue.1
    • Nakamura, S.1    Yang, C.-S.2    Sakon, N.3    Ueda, M.4    Tougan, T.5    Yamashita, A.6    Goto, N.7    Takahashi, K.8    Yasunaga, T.9    Ikuta, K.10
  • 6
  • 8
    • 2442510013 scopus 로고    scopus 로고
    • Use of the DNA Flow-Thru Chip, a Three-Dimensional Biochip, for Typing and Subtyping of Influenza Viruses
    • 10.1128/JCM.42.5.2173-2185.2004, 404638, 15131186
    • Kessler N, Ferraris O, Palmer K, Marsh W, Steel A. Use of the DNA Flow-Thru Chip, a Three-Dimensional Biochip, for Typing and Subtyping of Influenza Viruses. J Clin Microbiol 2004, 42(5):2173-2185. 10.1128/JCM.42.5.2173-2185.2004, 404638, 15131186.
    • (2004) J Clin Microbiol , vol.42 , Issue.5 , pp. 2173-2185
    • Kessler, N.1    Ferraris, O.2    Palmer, K.3    Marsh, W.4    Steel, A.5
  • 9
  • 10
    • 34248159346 scopus 로고    scopus 로고
    • High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment
    • 10.1007/s00248-006-9134-9, 17334858
    • DeSantis T, Brodie E, Moberg J, Zubieta I, Piceno Y, Andersen G. High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment. Microbial Ecology 2007, 53(3):371-383. 10.1007/s00248-006-9134-9, 17334858.
    • (2007) Microbial Ecology , vol.53 , Issue.3 , pp. 371-383
    • DeSantis, T.1    Brodie, E.2    Moberg, J.3    Zubieta, I.4    Piceno, Y.5    Andersen, G.6
  • 11
    • 33746621649 scopus 로고    scopus 로고
    • Design of microarray probes for virus identification and detection of emerging viruses at the genus level
    • 10.1186/1471-2105-7-232, 1523220, 16643672
    • Chou C-C, Lee T-T, Chen C-H, Hsiao H-Y, Lin Y-L, Ho M-S, Yang P-C, Peck K. Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics 2006, 7(1):232. 10.1186/1471-2105-7-232, 1523220, 16643672.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 232
    • Chou, C.-C.1    Lee, T.-T.2    Chen, C.-H.3    Hsiao, H.-Y.4    Lin, Y.-L.5    Ho, M.-S.6    Yang, P.-C.7    Peck, K.8
  • 12
    • 33846113818 scopus 로고    scopus 로고
    • Panmicrobial oligonucleotide array for diagnosis of infectious diseases
    • 10.3201/eid1301.060837, 2725825, 17370518
    • Palacios G, Quan P-L, Jabado O, Conlan S, Hirschberg D, Liu Y. Panmicrobial oligonucleotide array for diagnosis of infectious diseases. Emerg Infect Dis 2007, 13(1). 10.3201/eid1301.060837, 2725825, 17370518., http://www.cdc.gov/NCIDOD/EID/13/1/73.htm
    • (2007) Emerg Infect Dis , vol.13 , Issue.1
    • Palacios, G.1    Quan, P.-L.2    Jabado, O.3    Conlan, S.4    Hirschberg, D.5    Liu, Y.6
  • 13
    • 0141923868 scopus 로고    scopus 로고
    • Molecular Detection and Identification of Influenza Viruses by Oligonucleotide Microarray Hybridization
    • 10.1128/JCM.41.10.4542-4550.2003, 254299, 14532180
    • Sengupta S, Onodera K, Lai A, Melcher U. Molecular Detection and Identification of Influenza Viruses by Oligonucleotide Microarray Hybridization. J Clin Microbiol 2003, 41(10):4542-4550. 10.1128/JCM.41.10.4542-4550.2003, 254299, 14532180.
    • (2003) J Clin Microbiol , vol.41 , Issue.10 , pp. 4542-4550
    • Sengupta, S.1    Onodera, K.2    Lai, A.3    Melcher, U.4
  • 15
    • 34547599988 scopus 로고    scopus 로고
    • Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens
    • 10.1007/s00253-007-0993-x, 17492283
    • Wang X-W, Zhang L, Jin L-Q, Jin M, Shen Z-Q, An S, Chao F-H, Li J-W. Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens. Applied Microbiology and Biotechnology 2007, 76(1):225-233. 10.1007/s00253-007-0993-x, 17492283.
    • (2007) Applied Microbiology and Biotechnology , vol.76 , Issue.1 , pp. 225-233
    • Wang, X.-W.1    Zhang, L.2    Jin, L.-Q.3    Jin, M.4    Shen, Z.-Q.5    An, S.6    Chao, F.-H.7    Li, J.-W.8
  • 16
    • 31644449156 scopus 로고    scopus 로고
    • Detection and identification of intestinal pathogenic bacteria by hybridization to oligonucleotide microarrays
    • Jin L-Q, Li J-W, Wang S-Q, Chao F-H, Wang X-W, Yuan Z-Q. Detection and identification of intestinal pathogenic bacteria by hybridization to oligonucleotide microarrays. World J Gastroenterol 2005, 11(48):7615-7619.
    • (2005) World J Gastroenterol , vol.11 , Issue.48 , pp. 7615-7619
    • Jin, L.-Q.1    Li, J.-W.2    Wang, S.-Q.3    Chao, F.-H.4    Wang, X.-W.5    Yuan, Z.-Q.6
  • 17
    • 0033952657 scopus 로고    scopus 로고
    • Rapid Diagnosis of Bacteremia by Universal Amplification of 23S Ribosomal DNA Followed by Hybridization to an Oligonucleotide Array
    • 86203, 10655385
    • Anthony RM, Brown TJ, French GL. Rapid Diagnosis of Bacteremia by Universal Amplification of 23S Ribosomal DNA Followed by Hybridization to an Oligonucleotide Array. J Clin Microbiol 2000, 38(2):781-788. 86203, 10655385.
    • (2000) J Clin Microbiol , vol.38 , Issue.2 , pp. 781-788
    • Anthony, R.M.1    Brown, T.J.2    French, G.L.3
  • 18
    • 34548084879 scopus 로고    scopus 로고
    • Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray
    • 10.1128/JCM.00737-07, 1951265, 17553978
    • Quan P-L, Palacios G, Jabado OJ, Conlan S, Hirschberg DL, Pozo F, Jack PJM, Cisterna D, Renwick N, Hui J, et al. Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray. J Clin Microbiol 2007, 45(8):2359-2364. 10.1128/JCM.00737-07, 1951265, 17553978.
    • (2007) J Clin Microbiol , vol.45 , Issue.8 , pp. 2359-2364
    • Quan, P.-L.1    Palacios, G.2    Jabado, O.J.3    Conlan, S.4    Hirschberg, D.L.5    Pozo, F.6    Jack, P.J.M.7    Cisterna, D.8    Renwick, N.9    Hui, J.10
  • 20
    • 42949113983 scopus 로고    scopus 로고
    • A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
    • Satya R, Zavaljevski N, Kumar K, Reifman J. A high-throughput pipeline for designing microarray-based pathogen diagnostic assays. BMC Bioinformatics 2008, 9.
    • (2008) BMC Bioinformatics , vol.9
    • Satya, R.1    Zavaljevski, N.2    Kumar, K.3    Reifman, J.4
  • 21
    • 0034128129 scopus 로고    scopus 로고
    • Identification of a new human DNA virus (TTV-like mini virus, TMLM) intermediately related to TT virus and chicken anemia virus
    • 10.1007/s007050050689, 10881684
    • Takahashi K, Iwasa Y, Hijikata M, Mishiro S. Identification of a new human DNA virus (TTV-like mini virus, TMLM) intermediately related to TT virus and chicken anemia virus. Archives of Virology 2000, 145:979-993. 10.1007/s007050050689, 10881684.
    • (2000) Archives of Virology , vol.145 , pp. 979-993
    • Takahashi, K.1    Iwasa, Y.2    Hijikata, M.3    Mishiro, S.4
  • 22
    • 77953786835 scopus 로고    scopus 로고
    • Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses
    • 10.1128/JVI.00501-10, 20463061
    • Li L, Victoria JG, Wang C, Jones M, Fellers GM, Kunz TH, Delwart E. Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses. J Virol 84(14):6955-6965. 10.1128/JVI.00501-10, 20463061.
    • J Virol , vol.84 , Issue.14 , pp. 6955-6965
    • Li, L.1    Victoria, J.G.2    Wang, C.3    Jones, M.4    Fellers, G.M.5    Kunz, T.H.6    Delwart, E.7
  • 23
    • 0141891348 scopus 로고    scopus 로고
    • Metagenomic Analyses of an Uncultured Viral Community from Human Feces
    • 10.1128/JB.185.20.6220-6223.2003, 225035, 14526037
    • Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Metagenomic Analyses of an Uncultured Viral Community from Human Feces. J Bacteriol 2003, 185(20):6220-6223. 10.1128/JB.185.20.6220-6223.2003, 225035, 14526037.
    • (2003) J Bacteriol , vol.185 , Issue.20 , pp. 6220-6223
    • Breitbart, M.1    Hewson, I.2    Felts, B.3    Mahaffy, J.M.4    Nulton, J.5    Salamon, P.6    Rohwer, F.7
  • 24
    • 33645774343 scopus 로고    scopus 로고
    • E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns
    • 10.1186/gb-2005-6-9-r78, 1242213, 16168085
    • Urisman A, Fischer K, Chiu C, Kistler A, Beck S, Wang D, DeRisi J. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biol 2005, 6(9):R78. 10.1186/gb-2005-6-9-r78, 1242213, 16168085.
    • (2005) Genome Biol , vol.6 , Issue.9
    • Urisman, A.1    Fischer, K.2    Chiu, C.3    Kistler, A.4    Beck, S.5    Wang, D.6    DeRisi, J.7
  • 25
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: application to sequence homology searches
    • 10.1093/bioinformatics/14.1.48, 9520501
    • Bailey T, Gribskov M. Combining evidence using p-values: application to sequence homology searches. Bioinformatics 1998, 14(1):48-54. 10.1093/bioinformatics/14.1.48, 9520501.
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 48-54
    • Bailey, T.1    Gribskov, M.2
  • 27
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Humana Press, Totowa, NJ, Krawetz S, Misener S
    • Rozen S, Skaletsky HJ. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Humana Press, Totowa, NJ, Krawetz S, Misener S.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.