Amphibacillus jilinensis sp. nov., a facultatively anaerobic, alkaliphilic bacillus from a soda lake

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 11, 2010, Pages 2540-2543

  Wu, Xiao Yue ^a   Zheng, Gang ^a   Zhang, Wen Wu ^a   Xu, Xue Wei ^b   Wu, Min ^a   Zhu, Xu Fen ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b Chongqing Institute of Geology and Mineral Resources   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; FATTY ACID; RNA 16S;

AMPHIBACILLUS JILINENSIS; ARTICLE; BACILLACEAE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; LAKE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ALKALIES; ANAEROBIOSIS; BACILLACEAE; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FRESH WATER; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE;

AMPHIBACILLUS; AMPHIBACILLUS TROPICUS; POSIBACTERIA;

EID: 78649267539     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.018259-0     Document Type: Article

References (15)

1. An, S. Y., Ishikawa, S., Kasai, H., Goto, K. & Yokota, A. (2007). Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan. Int J Syst Evol Microbiol 57, 2489-2492. (Pubitemid 350187406)
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
4. Hungate, R. E. (1969). A roll tube method for cultivation of strict anaerobes. Methods Microbiol 3B, 117-132.
5. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
6. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
7. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
8. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
9. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
10. Niimura, Y., Koh, E., Yanagida, F., Suzuki, K., Komagata, K. & Kozaki, M. (1990). Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase. Int J Syst Bacteriol 40, 297-301. (Pubitemid 20216940)
11. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
12. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
13. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
14. Winker, S. & Woese, C. R. (1991). A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. Syst Appl Microbiol 14, 305-310.
15. Zhilina, T. N., Garnova, E. S., Tourova, T. P., Kostrikina, N. A. & Zavarzin, G. A. (2001). Amphibacillus fermentum sp. nov. and Amphibacillus tropicus sp. nov., new alkaliphilic, facultatively anaerobic, saccharolytic bacilli from Lake Magadi. Microbiology (English translation of Mikrobiologiia) 70, 711-722.