Comparative genomic analysis of Atlantic salmon, Salmo salar, from Europe and North America

BMC Genetics

Volumn 11, Issue , 2010, Pages

  Lubieniecki, Krzysztof P ^a   Jones, Stacy L ^a   Davidson, Evelyn A ^a   Park, Jay ^a   Koop, Ben F ^b   Walker, Seumas ^c   Davidson, William S ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

^b UNIVERSITY OF VICTORIA   (Canada)

^c NATIONAL INSTITUTE OF WATER AND ATMOSPHERIC RESEARCH   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; ATLANTIC SALMON; CANADA; CHROMOSOME NUMBER; CHROMOSOME REARRANGEMENT; CHROMOSOME STRUCTURE; COMPARATIVE GENE MAPPING; COMPARATIVE STUDY; EUROPE; FEMALE; GENE MAPPING; GENETIC ANALYSIS; GENETIC LINKAGE; HAPLOID SPORE; MALE; MARKER GENE; MICROSATELLITE MARKER; NONHUMAN; NORTH AMERICA; PARENT; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; CHROMOSOME MAP; COMPARATIVE GENOMIC HYBRIDIZATION; GENETICS; KARYOTYPING; PEDIGREE; UNITED KINGDOM;

SALMO SALAR;

MICROSATELLITE DNA;

ANIMALS; CHROMOSOME MAPPING; COMPARATIVE GENOMIC HYBRIDIZATION; FEMALE; KARYOTYPING; MALE; MICROSATELLITE REPEATS; NEW BRUNSWICK; PEDIGREE; SALMO SALAR; SCOTLAND;

EID: 78549235103     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-11-105     Document Type: Article

References (37)

1. Nelson JS. Fishes of the World. 2006, John Wiley and Sons Inc., New Jersey.
2. Davidson WS, Birt TP, Green JM. A review of genetic variation in Atlantic salmon, Salmo salar L., and its importance for stock identification, enhancement programmes and aquaculture. J Fish Biol 1989, 34:547-560.
3. King T, Verspoor E, Spidle AP, Gross R, Phillips RB, Koljonen M-L, Sanchez JA, Morrison CL. Biodiversity and population structure. The Atlantic Salmon: Genetics, Conservation and Management 2007, 117-166. Blackwell Publishing, Ltd., Oxford, UK, Verspoor E, Stradmeyer L, Nielsen JL.
4. Verspoor E. Genetic diversity among Atlantic salmon (Salmo salar) populations. ICES J Marine Sci 1997, 54:965-973.
5. Payne RH, Child AR, Forrest A. Geographical Variation in the Atlantic Salmon. Nature 1971, 231:250-252. 10.1038/231250a0, 4930691.
6. Verspoor E, McCarthy E. Genetic divergence at the NAD+-dependent malic enzyme locus in Atlantic salmon from Europe and North America. J Fish Biol 1997, 51:155-163.
7. Stahl G. Genetic population structure of Atlantic salmon. Population Genetics & Fishery Management 1986, 132-133. University of Washington Press, Seattle and London, Ryman N, Utter F.
8. Bermingham E, Forbes SH, Friedland K, Pla C. Discrimination between Atlantic Salmon (Salmo salar) of North American and European Origin using Restriction Analyses of Mitochondrial DNA. Can J Fish Aquat Sci 1991, 48:884-893.
9. McVeigh HP, Bartlett SE, Davidson WS. Polymerase chain reaction/direct sequence analysis of the cytochrome b gene in Salmo salar. Aquaculture 1991, 95:225-233.
10. Cutler MG, Bartlett SE, Hartley SE, Davidson WS. A polymorphism in the Ribosomal RNA genes distinguishes Atlantic salmon (Salmo salar) from North America and Europe. Can J Fish Aquat Sci 1991, 48:1655-1661.
11. Taggart JB, Verspoor E, Galvin PT, Moran P, Ferguson A. A minisatellite DNA marker for discriminating between European and North American Atlantic salmon (Salmo salar). Can J Fish Aquat Sci 1995, 52:2305-2311.
12. Hartley SE. The chromosomes of Salmonid fishes. Biol Rev 1987, 62:197-214.
13. Phillips RB, Ráb P. Chromosomal evolution in the Salmonidae (Pisces): an update. Biol Rev 2001, 76:1-25. 10.1017/S1464793100005613, 11325050.
14. Roberts FL. Chromosomal polymorphism in North American landlocked Salmo salar. Can J Cytol 1968, 10:865-875.
15. Roberts FL. Atlantic salmon (Salmo salar) chromosomes and speciation. Trans Am Fish Soc 1970, 99:105-111.
16. Hartley SE, Horne MT. Chromosome polymorphism and constitutive heterochromatin in the Atlantic salmon, Salmo salar. Chromosoma (Berl) 1984, 89:377-380.
17. Boothroyd ER. Chromosome studies on three Canadian populations of Atlantic salmon, Salmo salar L. Can J Cytol 1959, 1:161-172.
18. Hartley SE, Horne MT. Chromosome relationships in the genus Salmo. Chromosoma (Berl) 1984, 90:229-237.
19. Bolla S. Cytogenetic studies in Atlantic salmon and rainbow trout embryos. Hereditas 1987, 106:11-17.
20. Boulding EG, Culling M, Glebe B, Berg PR, Moen T, Lien S. Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans-Atlantic backcrosses. Heredity 2008, 101:381-391. 10.1038/hdy.2008.67, 18648388.
21. McGowan C, Davidson WS. Unidirectional natural hybridization between brown trout (Salmo trutta) and Atlantic salmon (S. salar) in Newfoundland. Can J Fish Aquat Sci 1992, 49:1953-1958.
22. McGowan C, Davidson WS. Artificial hybridization of Newfoundland brown trout and Atlantic salmon: hatchability, survival and growth to first feeding. Aquaculture 1992, 106:117-125.
23. Chevassus B. Hybridization in salmonids: results and perspectives. Aquaculture 1979, 17:113-128.
24. Phillips RB, Keatley KA, Morasch MR, Ventura AB, Lubieniecki KP, Koop BF, Danzmann RG, Davidson WS. Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss). BMC Genet 2009, 10:46. 10.1186/1471-2156-10-46, 2734554, 19689812.
25. Danzmann RG, Davidson EA, Ferguson MM, Gharbi K, Koop BF, Hoyheim B, Lien S, Lubieniecki KP, Moghadam HK, Park J, Phillips RB, Davidson WS. Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon). BMC Genomics 2008, 9:557. 10.1186/1471-2164-9-557, 2632648, 19032764.
26. Atlantic salmon genomics database. , http://www.asalbase.org
27. Moen T, Hoyheim B, Munck H, Gomez-Raya L. A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Animal Genet 2004, 35:81-92. 10.1111/j.1365-2052.2004.01097.x, 15025566.
28. Moen T, Hayes B, Baranski M, Berg PR, Kjoglum S, Koop BF, Davidson WS, Omholt SW, Lien S. A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers. BMC Genomics 2008, 9:223. 10.1186/1471-2164-9-223, 2405805, 18482444.
29. Allendorf FW, Danzmann RG. Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout. Genetics 1997, 145:1083-1092. 1207878, 9093860.
30. Wright JE, Johnson K, Hollister A, May B. Meiotic models explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes. Isozymes Curr Top Biol Med Res 1983, 10:239-260.
31. Gharbi K, Gautier A, Danzmann RG, Gharbi S, Sakamoto T, Hoyheim B, Taggart JB, Cairney M, Powell R, Krieg F, Okamoto N, Ferguson MM, Holm LE, Guyomard R. A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics 2006, 172:2405-2419. 10.1534/genetics.105.048330, 1456399, 16452148.
32. Morrison WJ. Nonrandom segregation of two lactate dehydrogenase subunit loci in trout. Trans Am Fish Soc 1970, 99:193-206.
33. Kent MP, Hayes B, Xiang Q, Berg PR, Gibbs RA, Lien S. Development of 16.5K SNP-Chip for Atlantic salmon. Plant and Animal Genome Conference XVII 2009, W020. San Diego, CA.
34. Gruchy CG. Salmon nomenclature. Nature 1971, 234:360.
35. Danzmann RG, Gharbi K. Gene mapping in fishes: a means to an end. Genetica 2001, 111:3-23. 10.1023/A:1013713431255, 11841175.
36. Voorrips RE. Mapchart: software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93:77-78. 10.1093/jhered/93.1.77, 12011185.
37. Fishman L, Kelly AJ, Morgan E, Willis JH. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 2001, 159:1701-1716. 1461909, 11779808.