Finding significant matches of position weight matrices in linear time

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 8, Issue 1, 2011, Pages 69-79

  Pizzi, Cinzia ^a   Rastas, Pasi ^b   Ukkonen, Esko ^b  

^a UNIVERSITY OF PADOVA   (Italy)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

pattern search; Position weight matrices; position specific scoring matrices; profiles; string matching.

Indexed keywords

PATTERN SEARCH; POSITION-SPECIFIC SCORING MATRICES; PROFILES; STRING MATCHING; WEIGHT MATRICES;

ALGORITHMS; DNA SEQUENCES;

COMBINATORIAL MATHEMATICS;

DNA; PROTEIN;

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; CHEMISTRY; DNA SEQUENCE; HUMAN; METHODOLOGY; SEQUENCE ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; DNA; HUMANS; PATTERN RECOGNITION, AUTOMATED; PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN;

EID: 78449304384     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2009.35     Document Type: Article

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