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Volumn 25, Issue 23, 2009, Pages 3181-3182

MOODS: Fast search for position weight matrix matches in DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA SEQUENCE; METHODOLOGY; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS;

EID: 75949117507     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp554     Document Type: Article
Times cited : (127)

References (12)
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    • Beckstette, M.1
  • 2
    • 25444500431 scopus 로고    scopus 로고
    • Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison
    • Brown, C.T. et al. (2005) Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. BMC Bioinformatics, 6, 70.
    • (2005) BMC Bioinformatics , vol.6 , pp. 70
    • Brown, C.T.1
  • 3
    • 65649092976 scopus 로고    scopus 로고
    • Biopython: freely available Python tools for computational molecular biology and bioinformatics
    • Cock, P.J.A. et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25, 1422-1423.
    • (2009) Bioinformatics , vol.25 , pp. 1422-1423
    • Cock, P.J.A.1
  • 4
    • 0036677662 scopus 로고    scopus 로고
    • TFBS: computational framework for transcription factor binding site analysis
    • Lenhard, B. and Wasserman, W.W. (2002) TFBS: computational framework for transcription factor binding site analysis. Bioinformatics, 18, 1135-1136.
    • (2002) Bioinformatics , vol.18 , pp. 1135-1136
    • Lenhard, B.1    Wasserman, W.W.2
  • 6
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC(R): transcriptional regulation, from patterns to profiles
    • Matys, V. et al. (2003) TRANSFAC(R): transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 374-378
    • Matys, V.1
  • 8
    • 78449304384 scopus 로고    scopus 로고
    • Finding significant matches of position weight matrices in linear time
    • (in press)
    • Pizzi, C. et al. (2009) Finding significant matches of position weight matrices in linear time. IEEE/ACM Trans Comput. Biol. Bioinform. (in press).
    • (2009) IEEE/ACM Trans Comput. Biol. Bioinform.
    • Pizzi, C.1
  • 10
    • 0024604438 scopus 로고
    • Methods for calculating the probabilities of finding patterns in sequences
    • Staden, R. (1989) Methods for calculating the probabilities of finding patterns in sequences. Comput. Appl. Biosci., 5, 89-96.
    • (1989) Comput. Appl. Biosci. , vol.5 , pp. 89-96
    • Staden, R.1
  • 11
    • 0020480251 scopus 로고
    • Use of the 'perceptron' algorithm to distinguish translational initiation sites in e. coli
    • Stormo, G.D. et al. (1982) Use of the 'perceptron' algorithm to distinguish translational initiation sites in e. coli. Nucleic Acids Res., 10, 2997-3012.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 2997-3012
    • Stormo, G.D.1
  • 12
    • 0034046617 scopus 로고    scopus 로고
    • Fast probabilistic analysis of sequence function using scoring matrices
    • Wu, T.D. et al. (2000) Fast probabilistic analysis of sequence function using scoring matrices. Bioinformatics, 16, 233-244.
    • (2000) Bioinformatics , vol.16 , pp. 233-244
    • Wu, T.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.