Genome sequence of the temperate bacteriophage PH10 from Streptococcus oralis

Virus Genes

Volumn 41, Issue 3, 2010, Pages 450-458

  Van Der Ploeg, Jan R ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Attachment site; Bacteriophage; Endolysin; Integrase; Prophage; Streptococcus oralis

Indexed keywords

BACTERIAL PROTEIN; DNA METHYLTRANSFERASE; ENDOLYSIN; INTEGRASE; LYSOZYME; MITOMYCIN C; STRUCTURAL PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIOPHAGE PH10; BACTERIUM CULTURE; BACTERIUM ISOLATE; BASE PAIRING; DNA BASE COMPOSITION; FRAMESHIFT MUTATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENOME ANALYSIS; LYSOGENIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROPHAGE; PROTEIN CLEAVAGE; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN PURIFICATION; SEQUENCE HOMOLOGY; START CODON; STREPTOCOCCUS MITIS; STREPTOCOCCUS ORALIS; STREPTOCOCCUS PHAGE; STREPTOCOCCUS PNEUMONIAE; TOOTH PLAQUE;

DENTAL PLAQUE; GENOME, VIRAL; HUMANS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; STREPTOCOCCAL INFECTIONS; STREPTOCOCCUS ORALIS; STREPTOCOCCUS PHAGES; VIRAL PROTEINS;

STREPTOCOCCUS MITIS; STREPTOCOCCUS ORALIS; STREPTOCOCCUS PNEUMONIAE;

EID: 78449236189     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-010-0525-0     Document Type: Article

References (36)

1. BJ Paster SK Boches JL Galvin RE Ericson CN Lau VA Levanos A Sahasrabudhe FE Dewhirst 2001 Bacterial diversity in human subgingival plaque J. Bacteriol. 183 3770 3783 1:CAS:528:DC%2BD3MXktlSguro%3D 10.1128/JB.183.12.3770-3783.2001 11371542
2. C Pearce GH Bowden M Evans SP Fitzsimmons J Johnson MJ Sheridan R Wientzen MF Cole 1995 Identification of pioneer viridans streptococci in the oral cavity of human neonates J. Med. Microbiol. 42 67 72 1:STN:280: DyaK2M3lslektw%3D%3D 10.1099/00222615-42-1-67 7739028
3. MF Cole S Bryan MK Evans CL Pearce MJ Sheridan PA Sura R Wientzen GHW Bowden 1998 Humoral immunity to commensal oral bacteria in human infants: salivary antibodies reactive with Actinomyces naeslundii genospecies 1 and 2 during colonization Infect. Immun. 66 4283 4289 1:CAS:528:DyaK1cXlslCrtr0%3D 9712779
4. CW Douglas J Heath KK Hampton FE Preston 1993 Identity of viridans streptococci isolated from cases of infective endocarditis J. Med. Microbiol. 39 179 182 1:STN:280:DyaK3sznsFGisg%3D%3D 10.1099/00222615-39-3-179 8366515
5. LS Håvarstein P Gaustad IF Nes DA Morrison 1996 Identification of the streptococcal competence-pheromone receptor Mol. Microbiol. 21 863 869 10.1046/j.1365-2958.1996.521416.x 8878047
6. F Chi O Nolte C Bergmann M Ip R Hakenbeck 2007 Crossing the barrier: evolution and spread of a major class of mosaic pbp2x in Streptococcus pneumoniae, S. mitis and S. oralis Int. J. Med. Microbiol. 297 503 512 1:CAS:528:DC%2BD2sXhsVKntbjF 10.1016/j.ijmm.2007.02.009 17459765
7. CA Tylenda C Calvert PE Kolenbrander A Tylenda 1985 Isolation of Actinomyces bacteriophage from human dental plaque Infect. Immun. 49 1 6 1:STN:280:DyaL2M3jtlensA%3D%3D 4008044
8. AL Delisle CA Rostkowski 1993 Lytic bacteriophages of Streptococcus mutans Curr. Microbiol. 27 163 167 1:CAS:528:DyaK2cXht12ns7s%3D 10.1007/BF01576015
9. G Bachrach M Leizerovici-Zigmond A Zlotkin R Naor D Steinberg 2003 Bacteriophage isolation from human saliva Lett. Appl. Microbiol. 36 50 53 10.1046/j.1472-765X.2003.01262.x 12485342
10. G Hitch J Pratten PW Taylor 2004 Isolation of bacteriophages from the oral cavity Lett. Appl. Microbiol. 39 215 219 1:STN:280:DC%2BD2czktFWrtQ%3D%3D 10.1111/j.1472-765X.2004.01565.x 15242464
11. RH Stevens BF Hammond CH Lai 1982 Characterization of an inducible bacteriophage from a leukotoxic strain of Actinobacillus actinomycetemcomitans Infect. Immun. 35 343 349 1:STN:280:DyaL38%2FpslagtA%3D%3D 7054125
12. IR Siboo BA Bensing PM Sullam 2003 Genomic organization and molecular characterization of SM1, a temperate bacteriophage of Streptococcus mitis J. Bacteriol. 185 6968 6975 1:CAS:528:DC%2BD3sXpt1ymsrk%3D 10.1128/JB.185.23.6968- 6975.2003 14617660
13. JR van der Ploeg 2008 Characterization of Streptococcus gordonii prophage PH15: complete genome sequence and functional analysis of phage-encoded integrase and endolysin Microbiology 154 2970 2978 10.1099/mic.0.2008/018739-0 18832303
14. HL Mitchell SG Dashper DV Catmull RA Paolini SM Cleal N Slakeski KH Tan EC Reynolds 2010 Treponema denticola biofilm-induced expression of a bacteriophage, toxin-antitoxin systems and transposases Microbiology 156 774 788 1:CAS:528:DC%2BC3cXktFOksLc%3D 10.1099/mic.0.033654-0 20007650
15. P Romero E García TJ Mitchell 2009 Development of a prophage typing system and analysis of prophage carriage in Streptococcus pneumoniae Appl. Environ. Microbiol. 75 1642 1649 1:CAS:528:DC%2BD1MXjsFKgsb8%3D 10.1128/AEM.02155-08 19168661
16. R López E García 2004 Recent trends on the molecular biology of pneumococcal capsules, lytic enzymes, and bacteriophage FEMS Microbiol. Rev. 28 553 580 10.1016/j.femsre.2004.05.002 15539074
17. P Romero R López E García 2004 Characterization of LytA-like N-acetylmuramoyl-L-alanine amidases from two new Streptococcus mitis bacteriophages provides insights into the properties of the major pneumococcal autolysin J. Bacteriol. 186 8229 8239 1:CAS:528:DC%2BD2cXhtFSgsr3M 10.1128/JB.186.24.8229-8239.2004 15576771
18. C Ronda E García R López 2001 Infection of Streptococcus oralis NCTC 11427 by pneumococcal phages FEMS Microbiol. Lett. 65 187 192 10.1111/j.1574-6968.1989.tb03620.x
19. F.M. Ausubel, R. Brent, R.E. Kingston, D.E. Moore, J.G. Seidman, J.A. Smith, K. Struhl, Current Protocols in Molecular Biology (Wiley, New York, 1987)
20. X Huang A Madan 1999 CAP3: A DNA sequence assembly program Genome Res. 9 868 877 1:CAS:528:DyaK1MXmslKgs7Y%3D 10.1101/gr.9.9.868 10508846
21. A Lukashin M Borodovsky 1998 GeneMark.hmm: new solutions for gene finding Nucleic Acids Res. 26 1107 1115 1:CAS:528:DyaK1cXhvVWksr4%3D 10.1093/nar/26.4.1107 9461475
22. M Kilian L Mikkelsen J Henrichsen 1989 Taxonomic study of viridans streptococci: description of Streptococcus gordonii sp. nov. and emended descriptions of Streptococcus sanguis (White and Niven 1946), Streptococcus oralis (Bridge and Sneath 1982), and Streptococcus mitis (Andrewes and Horder 1906) Int. J. Syst. Bacteriol. 39 471 484 10.1099/00207713-39-4-471
23. C Canchaya C Proux G Fournous A Bruttin H Brüssow 2003 Prophage genomics Microbiol. Mol. Biol. Rev. 67 238 276 1:CAS:528:DC%2BD3sXlsVeht7k%3D 10.1128/MMBR.67.2.238-276.2003 12794192
24. P Romero NJ Croucher NL Hiller FZ Hu GD Ehrlich SD Bentley E García TJ Mitchell 2009 Comparative genomic analysis of 10 Streptococcus pneumoniae temperate bacteriophages J. Bacteriol. 191 4854 4862 1:CAS:528:DC%2BD1MXptlehsrk%3D 10.1128/JB.01272-08 19502408
25. S Lucchini F Desiere H Brüssow 1999 Similarly organized lysogeny modules in temperate Siphoviridae from low GC content Gram-positive bacteria Virology 263 427 435 1:CAS:528:DyaK1MXmvFOmtbc%3D 10.1006/viro.1999.9959 10544115
26. D Llull R López E García 2006 Skl, a novel choline-binding N-acetylmuramoyl-l-alanine amidase of Streptococcus mitis SK137 containing a CHAP domain FEBS Lett. 580 1959 1964 1:CAS:528:DC%2BD28XivV2ru7Y%3D 10.1016/j.febslet.2006.02.060 16530188
27. C Weigel H Seitz 2006 Bacteriophage replication modules FEMS Microbiol. Rev. 30 321 381 1:CAS:528:DC%2BD28XkslCmsbY%3D 10.1111/j.1574-6976.2006.00015.x 16594962
28. M Zuniga B Franke-Fayard G Venema J Kok A Nauta 2002 Characterization of the putative replisome organizer of the lactococcal bacteriophage r1t J. Virol. 76 10234 10244 1:CAS:528:DC%2BD38XnsV2ktLo%3D 10.1128/JVI.76.20.10234-10244.2002 12239299
29. V Obregón P García R López JL García 2003 VO1, a temperate bacteriophage of the type 19A multiresistant epidemic 8249 strain of Streptococcus pneumoniae: analysis of variability of lytic and putative C5 methyltransferase genes Microb. Drug Resist. 9 7 15 10.1089/107662903764736292 12705678
30. M Radlińska A Piekarowicz 1998 Cloning and characterization of the gene encoding a new DNA methyltransferase from Neisseria gonorrhoeae Biol. Chem. 379 1391 1395 9865616
31. M Radlińska JM Bujnicki A Piekarowicz 1999 Structural characterization of two tandemly arranged DNA methyltransferase genes from Neisseria gonorrhoeae MS11: N4-cytosine specific M.NgoMXV and nonfunctional 5-cytosine-type M. NgoMorf2P Proteins 37 717 728 10.1002/(SICI)1097- 0134(19991201)37:4<717::AID-PROT20>3.0.CO;2-P 10651285
32. A van Belkum S Scherer L van Alphen H Verbrugh 1998 Short-sequence DNA repeats in prokaryotic genomes Microbiol. Mol. Biol. Rev. 62 275 293 9618442
33. GT Chung JS Yoo HB Oh YS Lee SH Cha SJ Kim CK Yoo 2008 Complete genome sequence of Neisseria gonorrhoeae NCCP11945 J. Bacteriol. 190 6035 6036 1:CAS:528:DC%2BD1cXhtVCltLbI 10.1128/JB.00566-08 18586945
34. E García JL García P García A Arrarás JM Sánchez-Puelles R López 1988 Molecular evolution of lytic enzymes of Streptococcus pneumoniae and its bacteriophages Proc. Natl. Acad. Sci. USA 85 914 918 10.1073/pnas.85.3.914 3422470
35. JA Hermoso B Monterroso A Albert B Galan O Ahrazem P García M Martinez-Ripoll JL García M Menéndez 2003 Structural basis for selective recognition of pneumococcal cell wall by modular endolysin from phage Cp-1 Structure 11 1239 1249 1:CAS:528:DC%2BD3sXnvVOms7k%3D 10.1016/j.str.2003. 09.005 14527392
36. I Pérez-Dorado NE Campillo B Monterroso D Hesek M Lee JA Páez P García M Martínez-Ripoll JL García S Mobashery M Menéndez JA Hermoso 2007 Elucidation of the molecular recognition of bacterial cell wall by modular pneumococcal phage endolysin Cpl-1 J Biol. Chem. 34 24990 24999 10.1074/jbc.M704317200