Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome

Human Molecular Genetics

Volumn 7, Issue 12, 1998, Pages 1967-1978

  Ko, Minoru S H ^a   Threat, Tracy A ^a   Wang, Xueqian ^a   Horton, Joseph H ^a   Cui, Yushun ^a   Wang, Xiaohong ^a   Pryor, Eric ^a   Paris, Jason ^a   Wells Smith, Jeannine ^a   Kitchen, John R ^a   Rowe, Lucy B ^b   Eppig, Janan ^b   Satoh, Toshihiko ^c   Brant, Larry ^d   Fujiwara, Hiroyuki ^a   Yotsumoto, Shinichi ^a   Nakashima, Hiroshi ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b JACKSON LABORATORY   (United States)

^c TOKYO WOMEN'S MEDICAL UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

ANIMAL CELL; ARTICLE; CHROMOSOME 17; CHROMOSOME 2; CHROMOSOME 7; CHROMOSOME 9; EMBRYO; EMBRYO CELL; GENE CLUSTER; GENE MAPPING; GENOME; MOLECULAR CLONING; MOUSE; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; X CHROMOSOME;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES; DATA INTERPRETATION, STATISTICAL; DNA, COMPLEMENTARY; ECTODERM; EMBRYO; EMBRYONIC AND FETAL DEVELOPMENT; EXPRESSED SEQUENCE TAGS; FEMALE; GENE EXPRESSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE LIBRARY; GENES; GENETIC MARKERS; GENOME; GESTATIONAL AGE; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MICE; MICE, INBRED C57BL; MICROTUBULE-ASSOCIATED PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PREGNANCY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TRANSCRIPTION, GENETIC; X CHROMOSOME;

EID: 7844248675     PISSN: 09646906     EISSN: None     Source Type: Journal    
DOI: 10.1093/hmg/7.12.1967     Document Type: Article

References (53)

1. Copp,A.J. (1995) Death before birth: clues from gene knockouts and mutations. Trends Genet., 11, 87-93.
2. Edmonds,D.K., Lindsay,K.S., Miller,J.F., Williamson,E. and Wood,P.J. (1982) Early embryonic mortality in women. Fertil. Steril., 38, 447-453.
3. Wilcox,A.J., Weinberg,C.R., O'Connor,J.F., Baird,D.D., Schlatterer,J.P., Canfield,R.E., Armstrong,E.G. and Nisula,B.C. (1988) Incidence of early loss of pregnancy. N. Engl. J. Med., 319, 189-194.
4. Cross,J.C., Werb,Z. and Fisher,S.J. (1994) Implantation and placenta: key pieces of the development puzzle. Science, 266, 1508-1518.
5. Rossant,J. (1986) Development of extraembryonic cell lineages in the mouse embryo. In Rossant,J. and Pedersen,R.A. (eds), Experimental Approaches to Mammalian Embryonic Development. Cambridge University Press, Cambridge, UK, pp. 97-120.
6. Hoffman,L.H. and Wooding,F.B.P. (1993) Giant and binucleate trophoblast cells of mammals. J. Exp. Zool., 266, 559-577.
7. Barlow,D.P. (1995) Gametic imprinting in mammals. Science, 270, 1610-1613.
8. Leighton,P.A., Saam,J.R., Ingram,R.S. and Tilghman,S.M. (1996) Genomic imprinting in mice: its function and mechanism. Biol. Reprod., 54, 273-278.
9. McGrath,J. and Solter,D. (1984) Completion of mouse embryogenesis requires both the maternal and paternal genomes. Cell, 37, 179-183.
10. Surani,M.A., Barton,S.C. and Norris,M.L. (1984) Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis. Nature, 308, 548-550.
11. Kajii,T. and Ohama,K. (1977) Androgenetic origin of hydatidiform mole. Nature, 268, 633-634.
12. Takagi,N. and Sasaki,M. (1975) Preferential inactivation of the paternally derived X chromosome in the extraembryonic membranes of the mouse. Nature, 256, 640-641.
13. Lyon,M.F. (1993) Epigenetic inheritance in mammals. Trends Genet., 9, 123-128.
14. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic-local alignment search tool. J. Mol. Biol., 215, 403-410.
15. Boguski,M.S., Lowe,T.M.J. and Tolstoshev,C.M. (1993) dbEST-database for 'expressed sequence tags'. Nature Genet., 4, 332-333.
16. Marra,M.A., Hillier,L. and Walerston,R.H. (1998) Expressed sequence tags - ESTablishing bridges between genomes. Trends Genet., 14, 4-7.
17. Okubo,K., Hori,N., Matoba,R., Niiyama,T., Fukushima,A., Kojima,Y. and Matsubara,K. (1992) Large scale cDNA sequencing for gene expression analysis: quantitative and qualitative aspects of gene expression in a liver cell line, Hep G2. Nature Genet., 2, 173-179.
18. Yotsumoto,S., Shimada,T., Cui,C.Y., Nakashima,H., Fujiwara,H. and Ko,M.S.H. (1998) Expression of adrenomedullin, a hypotensive peptide, in the trophoblast giant cells at the embryo implantation site in mouse. Dev. Biol., in press.
19. Zhou,Y., Fisher,S.J., Janatpour,M., Genbacev,O., Dejana,JE., Wheelock,M. and Damsky,C.H. (1997) Human cytotrophoblasts adopt a vascular phenotype as they differentiate. A strategy for successful endovascular invasion? J. Clin. Invest., 99, 2139-2151.
20. Risau,W. (1995) Differentiation of endothelium. FASEB J., 9, 926-933.
21. Ko,M.S.H., Wang,X., Horton,J.H., Hagen,M.D., Takahashi,N., Maezaki,Y. and Nadeau,J.H. (1994) Genetic mapping of 40 cDNA clones on the mouse genome by PCR. Mamm. Genome, 5, 349-355.
22. Takahashi,N. and Ko,M.S.H. (1993) The short 3′-end region of complementary DNAs as PCR-based polymorphic markers for an expression map of the mouse genome. Genomics, 16, 161-168.
23. Nagamine,C.M., Chan,K. and Lau,Y.F. (1989) A PCR artifact: generation of heteroduplexes. Am. J. Hum. Genet., 45, 337-339.
24. Rowe,L.B., Nadeau,J.H., Tumer,R., Frankel,W.N., Letts,V.A., Eppig,J.T., Ko,M.S.H., Thurston,S.J. and Birkenmeier,E.H. (1994) Maps from two interspecific backcross DNA panels available as a community genetic mapping resource. Mamm. Genome, 5, 253-274.
25. Manly,K.F. (1993) A Macintosh program for storage and analysis of experimental genetic mapping data. Mamm. Genome, 4, 303-313.
26. Saccone,S., Caccio,S., Perani,P., Andreozzi,L., Rapisarda,A., Motta,S. and Bernardi,G. (1997) Compositional mapping of mouse chromosomes and identification of the gene-rich regions. Chromosome Res., 5, 293-300.
27. Schuler,G.D., Boguski,M.S., Stewart,E.A., Stein,L.D., Gyapay,G., Rice,K., White,R.E., Rodriguez-Tome,P., Aggarwal,A., Bajorek,E. et al. (1996) A gene map of the human genome. Science, 274, 540-546.
28. Bennett,D. (1975) The T-locus of the mouse. Cell, 6, 441-454.
29. Silver,L.M. (1993) The peculiar journey of a selfish chromosome: mouse t haplotypes and meiotic drive. Trends Genet., 9, 250-254.
30. Ohno,S. (1973) Ancient linkage groups and frozen accidents. Nature, 244, 259-262.
31. Ruddle,F.H., Bartels,J.L., Bentley,K.L., Kappen,C., Murtha,M.T. and Pendleton,J.W. (1994) Evolution of Hox genes. Anna. Rev. Genet., 28, 423-442.
32. Hardison,R. and Miller,W. (1993) Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. Mol. Biol. Evol., 10, 73-102.
33. Tiranti,V., Savoia,A., Forti,F., D'Apolito,M.F., Centra,M., Rocchi,M. and Zeviani,M. (1997) Identification of the gene encoding the human mitochondrial RNA polymerase (h-mtRPOL) by cyberscreening of the Expressed Sequence Tags database. Hum. Mol. Genet., 6, 615-625.
34. Hemminki,A., Markie,D., Tomlinson,I., Avizienyte,E., Roth,S., Loukola,A., Bignell,G., Warren,W., Aminoff,M., Hoglund,P., Jarvinen,H., Kristo,P., Pelin,K., Ridanpaa,M., Salovaara,R., Toro,T., Bodmer,W., Olschwang,S., Olsen,A.S., Stratton,M.R., de la Chapelle,A. and Aaltonen,L.A. (1998) A serine/threonine kinase gene defective in Peutz-Jeghers syndrome. Nature, 391, 184-187.
35. Monod,J. and Jacob,F. (1961) Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol., 3, 318-356.
36. Vogel,F. (1969) Does the human X chromosome show evidence for clustering of genes with related functions? J. Genet. Hum., 17, 475-477.
37. Farr,C.J. and Goodfellow,P.N. (1992) Hidden messages in genetic maps. Science, 258, 49.
38. Trowsdale,J. (1993) Genomic structure and function in the MHC. Trends Genet, 9, 117-122.
39. Cattanach,B.M. and Jones,J. (1994) Genetic imprinting in the mouse: implications for gene regulation. J. Inher. Metab. Dis., 17, 403-420.
40. Pallavicini,A., Zimbello,R., Tiso,N., Muraro,T., Rampoldi,L., Bortoluzzi,S., Valle,G., Lanfranchi,G. and Danieli,G.A. (1997) The preliminary transcript map of a human skeletal muscle. Hum. Mol. Genet., 6, 1445-1450.
41. w73) affecting trophectoderm development. J. Embryol. Exp. Morph., 36, 373-381.
42. Silver,L.M. (1995) Mouse Genetics: Concepts and Applications. Oxford University Press, New York, NY, pp. 115-116.
43. Fisher,E. and Scambler,P. (1994) Human haploinsufficiency - one for sorrow, two for joy. Nature Genet., 7, 5-7.
44. McLaughlin,K.J., Szabo,P., Haegel,H. and Mann,J.R. (1996) Mouse embryos with paternal duplication of an imprinted chromosome 7 region die at midgestation and lack placental spongiotrophoblast. Development, 122, 265-270.
45. Guillemot,F., Caspary,T., Tilghman,S.M., Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Anderson,D.J., Joyner,A.L., Rossant,J. and Nagy,A. (1995) Genomic imprinting of Mash2, a mouse gene required for trophoblast development. Nature Genet., 9, 235-242.
46. Tada,T., Takagi,N. and Adler,I.D. (1993) Parental imprinting on the mouse X chromosome: effects on the early development of XO, XXY and XXX embryos. Genet. Res., 62, 139-148.
47. Marahrens,Y., Panning,B., Dausman,J., Strauss,W. and Jaenisch,R. (1997) Xist-deficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev., 11, 156-166.
48. Zechner,U., Reule,M., Orth,A., Bonhomme,F., Strack,B., Guenet, Hameister,H. and Fundele,R. (1996) An X-chromosome linked locus contributes to abnormal placental development in mouse interspecific hybrid. Nature Genet., 12, 398-403.
49. Junien,C. (1992) Beckwith-Wiedemann syndrome, tumourigenesis and imprinting. Curr. Opin. Genet. Dev., 2, 431-438.
50. Pilia,G., Hughes-Benzie,R.M., MacKenzie,A., Baybayan,P., Chen,E.Y., Huber,R., Neri.G., Cao,A., Forabosco,A. and Schlessinger,D. (1996) Mutations in GPC3, a glypican gene, cause the Simpson-Golabi-Behmel overgrowth syndrome. Nature Genet., 12, 241-247.
51. Moore,T. and Haig,D. (1991) Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet., 7, 45-49.
52. Hogan,B., Beddington,R., Costantini,F. and Lacy,E. (1994) Manipulating the Mouse Embryo: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
53. Takahashi,N. and Ko,M.S.H. (1994) Toward a whole cDNA catalog: construction of an equalized cDNA library from mouse embryos. Genomics, 23, 202-210.