Genome-wide transcriptome analysis of the adaptive response of Enterococcus faecalis to copper exposure

BioMetals

Volumn 23, Issue 6, 2010, Pages 1105-1112

  Reyes Jara, Angélica ^a   Latorre, Mauricio ^a   López, Guadalupe ^a   Bourgogne, Agathe ^b   Murray, Barbara E ^b   Cambiazo, Verónica ^a,c   González, Mauricio ^a  

^a UNIVERSITY OF CHILE   (Chile)

^b UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

^c Millennium Nucleus Center for Genomics of the Cell CGC   (Chile)

Author keywords

Copper homeostasis; CopY; E. faecalis; Global gene expression; Real time RT PCR

Indexed keywords

BACTERIAL PROTEIN; CI PROTEIN; COPPER; COPY PROTEIN; CRO PROTEIN; GREA PROTEIN; PROTEIN DEOR; PROTEIN SORC; RRF2 PROTEIN; TRANSCRIPTION ELONGATION FACTOR; TRANSCRIPTION FACTOR; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; CONTROLLED STUDY; COPPER METABOLISM; ENTEROCOCCUS FAECALIS; EVOLUTIONARY ADAPTATION; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE REGULATORY NETWORK; GENETIC ASSOCIATION; GENETIC CODE; GENOME ANALYSIS; GROWTH CURVE; HOMEOSTASIS; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; OPERON; REAL TIME POLYMERASE CHAIN REACTION; REPRESSOR GENE; TRANSCRIPTION REGULATION; TRANSCRIPTOMICS; WILD TYPE;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; COPPER; DOWN-REGULATION; ENTEROCOCCUS FAECALIS; GENE EXPRESSION PROFILING; REPRESSOR PROTEINS; UP-REGULATION;

ENTEROCOCCUS FAECALIS;

EID: 78349313262     PISSN: 09660844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10534-010-9356-7     Document Type: Article

References (27)

1. M Arredondo MT Núñez 2005 Iron and copper metabolism Mol Aspects Med 26 313 327 1:CAS:528:DC%2BD2MXpslygtbk%3D 10.1016/j.mam.2005.07.010 16112186 (Pubitemid 41225355)
2. KD Bissig H Wunderli-Ye PW Duda M Solioz 2001 Structure-function analysis of purified Enterococcus hirae CopB copper ATPase: effect of Menkes/Wilson disease mutation homologues Biochem J 357 217 223 1:CAS:528:DC%2BD3MXlt1Ojurg%3D 10.1042/0264-6021:3570217 11415452 (Pubitemid 32642919)
3. Y Chen JH Staddon GM Dunny 2007 Specificity determinants of conjugative DNA processing in the Enterococcus faecalis plasmid pCF10 and the Lactococcus lactis plasmid pRS01 Mol Microbiol 63 1549 1564 1:CAS:528:DC%2BD2sXjsVyqurs%3D 10.1111/j.1365-2958.2007.05610.x 17302827
4. J de Freitas H Wintz JH Kim H Poynton T Fox C Vulpe 2003 Yeast, a model organism for iron and copper metabolism studies Biometals 16 185 197 10.1023/A:1020771000746 12572678 (Pubitemid 36140228)
5. del Pozo T, Cambiazo V, González M (2010) Gene expression profiling analysis of copper homeostasis in Arabidopsis thaliana. Biochem Biophys Res Commun. doi: 10.1016/j.bbrc.2010.01.111
6. E Frangipani VI Slaveykova C Reimmann D Haas 2008 Adaptation of aerobically growing Pseudomonas aeruginosa to copper starvation J Bacteriol 190 6706 6717 1:CAS:528:DC%2BD1cXht1ChtrzF 10.1128/JB.00450-08 18708503
7. M Gonzalez L Tapia M Alvarado JD Tornero R Fernández 1999 Intracellular determination of elements in mammalian cultured cells by total reflection X-ray fluorescence spectrometry J Anal At Spectrom 14 885 888 1:CAS:528:DyaK1MXislWkt7s%3D 10.1039/a808748b
8. G Keller A Bird DR Winge 2005 Independent metalloregulation of Ace1 and Mac1 in Saccharomyces cerevisiae Eukaryot Cell 4 1863 1871 1:CAS:528: DC%2BD2MXht1Cgur7M 10.1128/EC.4.11.1863-1871.2005 16278453 (Pubitemid 41636878)
9. CJ Kershaw NL Brown C Constantinidou MD Patel JL Hobman 2005 The expression profile of Escherichia coli K-12 in response to minimal, optimal and excess copper concentrations Microbiology 151 1187 1198 1:CAS:528: DC%2BD2MXjslWqtb0%3D 10.1099/mic.0.27650-0 15817786 (Pubitemid 40568014)
10. CJ Kristich JR Chandler GM Dunny 2007 Development of a host-genotype-independent counter selectable marker and a high-frequency conjugative delivery system and their use in genetic analysis of Enterococcus faecalis Plasmid 57 131 144 1:CAS:528:DC%2BD2sXitlGgtLo%3D 10.1016/j.plasmid. 2006.08.003 16996131
11. K Leenhouts G Buist A Bolhuis A ten Berge J Kiel I Mierau M Dabrowska G Venema J Kok 1996 A general system for generating unlabelled gene replacements in bacterial chromosomes Mol Gen Genet 253 217 224 1:CAS:528:DyaK2sXkslaq 10.1007/s004380050315 9003306 (Pubitemid 26420007)
12. MC Linder M Hazegh-Azam 1996 Copper biochemistry and molecular biology Am J Clin Nutr 63 797S 811S 1:CAS:528:DyaK28XjtVyltL8%3D 8615367
13. ZH Lu CT Dameron M Solioz 2003 The Enterococcus hirae paradigm of copper homeostasis: copper chaperone turnover, interactions, and transactions Biometals 16 137 143 1:CAS:528:DC%2BD38XnvFOhs7k%3D 10.1023/A:1020709307589 12572673 (Pubitemid 36140224)
14. L Macomber JA Imlay 2009 The iron-sulfur clusters of dehydratases are primary intracellular targets of copper toxicity Proc Natl Acad Sci USA 106 8344 8349 1:CAS:528:DC%2BD1MXmsl2gtb8%3D 10.1073/pnas.0812808106 19416816
15. TV O'Halloran 1993 Transition metals in control of gene expression Science 261 715 725 10.1126/science.8342038 8342038
16. A Odermatt M Solioz 1995 Two trans-acting metalloregulatory proteins controlling expression of the copper-ATPases of Enterococcus hirae J Biol Chem 270 4349 4354 1:CAS:528:DyaK2MXktFSitbc%3D 10.1074/jbc.270.16.9217 7876197
17. E Pecou A Maass D Remenik J Briche M Gonzalez 2006 A mathematical model for copper homeostasis in Enterococcus hirae Math Biosci 20 222 239 10.1016/j.mbs.2006.04.009 (Pubitemid 44479768)
18. R Portmann KR Poulsen R Wimmer M Solioz 2006 CopY-like copper inducible repressors are putative 'winged helix' proteins Biometals 19 61 70 1:CAS:528:DC%2BD28XhvVaqu7o%3D 10.1007/s10534-005-5381-3 16502332 (Pubitemid 43291296)
19. TD Rae PJ Schmidt RA Pufahl VC Culotta TV O'Halloran 1999 Undetectable intracellular free copper: the requirement of a copper chaperone for superoxide dismutase Science 28 805 808 10.1126/science.284.5415.805 (Pubitemid 29291346)
20. A Reyes A Leiva V Cambiazo MA Mendez M Gonzalez 2006 Cop-like operon: structure and organization in species of the Lactobacillales order Biol Res 39 87 93 1:CAS:528:DC%2BD28XovVeqtbk%3D 10.4067/S0716-97602006000100010 16629168
21. P Ruiz-Garbajosa MJ Bonten DA Robinson J Top SR Nallapareddy C Torres TM Coque R Cantón F Baquero BE Murray R del Campo RJ Willems 2006 Multilocus sequence typing scheme for Enterococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination J Clin Microbiol 44 2220 2228 1:CAS:528:DC%2BD28XmvFKgt70%3D 10.1128/JCM.02596-05 16757624 (Pubitemid 43902179)
22. JC Rutherford AJ Bird 2004 Metal-responsive transcription factors that regulate iron, zinc, and copper homeostasis in eukaryotic cells Eukaryot Cell 3 1 13 1:CAS:528:DC%2BD2cXhs1Whs7s%3D 10.1128/EC.3.1.1-13.2004 14871932 (Pubitemid 38237293)
23. M Solioz JV Stoyanov 2003 Copper homeostasis in Enterococcus hirae FEMS Microbiol Rev 27 183 195 1:CAS:528:DC%2BD3sXksVOlt78%3D 10.1016/S0168-6445(03) 00053-6 12829267 (Pubitemid 36694655)
24. GM Teitzel A Geddie SK De Long MJ Kirisits M Whiteley MR Parsek 2006 Survival and growth in the presence of elevated copper: transcriptional profiling of copper-stressed Pseudomonas aeruginosa J Bacteriol 188 7242 7256 1:CAS:528:DC%2BD28XhtVylsb%2FI 10.1128/JB.00837-06 17015663 (Pubitemid 44547629)
25. NK Urbanski A Beresewicz 2000 Generation of OH initiated by interaction of Fe2+ and Cu+ with dioxygen; comparison with the Fenton chemistry Acta Biochim Pol 47 951 962 1:CAS:528:DC%2BD3MXhsVWqsb4%3D 11996118
26. SK Ward EA Hoye AM Talaat 2008 The global responses of Mycobacterium tuberculosis to physiological levels of copper J Bacteriol 190 2939 2946 1:CAS:528:DC%2BD1cXkslygsrg%3D 10.1128/JB.01847-07 18263720 (Pubitemid 351508193)
27. K Yamamoto A Ishiham 2005 Transcriptional response of Escherichia coli to external copper Mol Microbiol 56 215 227 1:CAS:528:DC%2BD2MXjtFWmu70%3D 10.1111/j.1365-2958.2005.04532.x 15773991 (Pubitemid 40461500)