Proteogenomic and functional analysis of chromate reduction in Acidiphilium cryptum JF-5, an Fe(III)-respiring acidophile

BioMetals

Volumn 23, Issue 6, 2010, Pages 1129-1138

  Magnuson, Timothy S ^a   Swenson, Michael W ^a   Paszczynski, Andrzej J ^b   Deobald, Lee A ^b   Kerk, David ^c   Cummings, David E ^c  

^a Nucl Eng Idaho State University   (United States)

^b UNIVERSITY OF IDAHO   (United States)

^c POINT LOMA NAZARENE UNIVERSITY   (United States)

Author keywords

Acidophile; Chromium reduction; Cytochrome c; Proteomics

Indexed keywords

APCA PROTEIN; CHROMIC ACID; CHROMIUM; CYTOCHROME C; FERRIC ION; MENADIOL; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE DEHYDROGENASE; UNCLASSIFIED DRUG;

ACIDIPHILIUM; ACIDIPHILIUM CRYPTUM; ACIDOPHILE; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIUM CULTURE; CONTROLLED STUDY; ELECTROCHEMICAL ANALYSIS; ENZYME ACTIVITY; FUNCTIONAL GENOMICS; FUNCTIONAL PROTEOMICS; GENE SEQUENCE; GENETIC CODE; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PREDICTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; REDUCTION; RESPIRATORY CHAIN; STRUCTURAL HOMOLOGY;

ACIDIPHILIUM; AMINO ACID SEQUENCE; CHROMATES; CYTOCHROMES C; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; OXIDOREDUCTASES; SEQUENCE ALIGNMENT;

ACIDIPHILIUM CRYPTUM;

EID: 78349308489     PISSN: 09660844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10534-010-9360-y     Document Type: Article

References (29)

1. M Assfalg I Bertini M Bruschi C Michel P Turano 2002 The metal reductase activity of some multiheme cytochromes c: NMR structural characterization of the reduction of chromium(VI) to chromium(III) by cytochrome c(7) Proc Natl Acad Sci USA 99 9750 9754 1:CAS:528:DC%2BD38XlslKgsrg%3D 10.1073/pnas.152290999 12119407 (Pubitemid 34831119)
2. R Bansal LA Deobald RL Crawford AJ Paszczynski 2009 Proteomic detection of proteins involved in perchlorate and chlorate metabolism Biodegradation 20 603 620 1:CAS:528:DC%2BD1MXovVOhs7o%3D 10.1007/s10532-009-9248-0 19199051
3. LL Barton F Goulhen M Bruschi NA Woodards RM Plunkett FJM Rietmeijer 2007 The bacterial metallome: composition and stability with specific reference to the anaerobic bacterium Desulfovibrio desulfuricans Biometals 20 291 302 1:CAS:528:DC%2BD2sXltlaqsLo%3D 10.1007/s10534-006-9059-2 17216357 (Pubitemid 46776573)
4. L Bordoli F Kiefer K Arnold P Benkert J Battey T Schwede 2009 Protein structure homology modeling using SWISS-MODEL workspace Nat Protoc 4 1 13 1:CAS:528:DC%2BD1cXhsFCkurfP 10.1038/nprot.2008.197 19131951
5. C Cervantes J Campos-Garcia S Devars F Gutierrez-Corona H Loza-Tavera JC Torres-Guzman R Moreno-Sanchez 2001 Interactions of chromium with microorganisms and plants FEMS Microbiol Rev 25 335 347 1:CAS:528:DC%2BD3MXjtlent74%3D 10.1111/j.1574-6976.2001.tb00581.x 11348688
6. AR Chakraborty RK Mishra 1992 Speciation and Determination of Chromium in Waters Chem Speciation Bioavail 4 131 134 1:CAS:528:DyaK3sXisVSgsrY%3D
7. B Chardin MT Giudici-Orticoni G De Luca B Guigliarelli M Bruschi 2003 Hydrogenases in sulfate-reducing bacteria function as chromium reductase Appl Microbiol Biotechnol 63 315 321 1:CAS:528:DC%2BD3sXpsFOntrY%3D 10.1007/s00253-003-1390-8 12861426 (Pubitemid 38130580)
8. DE Cummings S Fendorf N Singh RK Sani BM Peyton TS Magnuson 2007 Reduction of Cr(VI) under acidic conditions by the facultative Fe(III)-reducing bacterium Acidiphilium cryptum Environ Sci Technol 41 146 152 1:CAS:528:DC%2BD28XhtlCit7nI 10.1021/es061333k 17265940 (Pubitemid 46047836)
9. C Desai K Jain D Madamwar 2008 Evaluation of In vitro Cr(VI) reduction potential in cytosolic extracts of three indigenous Bacillus sp isolated from Cr(VI) polluted industrial landfill Bioresour Technol 99 6059 6069 1:CAS:528:DC%2BD1cXmtlCnsL8%3D 10.1016/j.biortech.2007.12.046 18255287
10. C Desai K Jain D Madamwar 2008 Hexavalent chromate reductase activity in cytosolic fractions of Pseudomonas sp G1DM21 isolated from Cr(VI) contaminated industrial landfill Process Biochem 43 713 721 1:CAS:528:DC%2BD1cXmsFymtrw%3D 10.1016/j.procbio.2008.02.015
11. CA Francis AY Obraztsova BM Tebo 2000 Dissimilatory metal reduction by the facultative anaerobe Pantoea agglomerans SP1 Appl Environ Microbiol 66 543 548 1:CAS:528:DC%2BD3cXhtFerurc%3D 10.1128/AEM.66.2.543-548.2000 10653716 (Pubitemid 30082739)
12. R Francisco MC Alpoim PV Morais 2002 Diversity of chromium-resistant and -reducing bacteria in a chromium-contaminated activated sludge J Appl Microbiol 92 837 843 1:CAS:528:DC%2BD38XksVSrsLg%3D 10.1046/j.1365-2672.2002.01591.x 11972686 (Pubitemid 34429703)
13. M Ginder-Vogel T Borch MA Mayes PM Jardine S Fendorf 2005 Chromate reduction and retention processes within arid subsurface environments Environ Sci Technol 39 7833 7839 1:CAS:528:DC%2BD2MXhtVWhs7jM 10.1021/es050535y 16295844 (Pubitemid 41476582)
14. CF Gonzalez DF Ackerley SV Lynch A Matin 2005 ChrR, a soluble quinone reductase of Pseudomonas putida that defends against H2O2 J Biol Chem 280 22590 22595 1:CAS:528:DC%2BD2MXltVyhsLw%3D 10.1074/jbc.M501654200 15840577 (Pubitemid 40853162)
15. YT He JM Bigham SJ Traina 2005 Biotite dissolution and Cr(VI) reduction at elevated pH and ionic strength Geochim Cosmochim Acta 69 3791 3800 1:CAS:528:DC%2BD2MXms1Oqtr8%3D 10.1016/j.gca.2005.03.013 (Pubitemid 41030752)
16. RN Horton WA Apel VS Thompson PP Sheridan 2006 Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens BMC Microbiology 6 5 12 10.1186/1471-2180-6-5 16436214
17. W Humphrey A Dalke K Schulten 1996 VMD-Visual Molecular Dynamics J Molec Graphics 14 33 38 1:CAS:528:DyaK28Xis12nsrg%3D 10.1016/0263-7855(96)00018-5 (Pubitemid 26152973)
18. LA Kelley MJ Sternberg 2009 Protein structure prediction on the Web: a case study using the Phyre server Nat Protoc 4 363 371 1:CAS:528: DC%2BD1MXivF2itbs%3D 10.1038/nprot.2009.2 19247286
19. TL Kieft JK Fredrickson TC Onstott YA Gorby HM Kostandarithes TJ Bailey DW Kennedy SW Li AE Plymale CM Spadoni MS Gray 1999 Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate Appl Environ Microbiol 65 1214 1221 1:CAS:528:DyaK1MXhslWkurY%3D 10049886
20. J Mazoch R Tesarik V Sedlacek I Kucera J Turanek 2004 Isolation and biochemical characterization of two soluble iron(III) reductases from Paracoccus denitrificans Eur J Biochem 271 553 562 1:CAS:528:DC%2BD2cXhtlWgsb8%3D 10.1046/j.1432-1033.2003.03957.x 14728682 (Pubitemid 38183629)
21. DJ Opperman E van Heerden 2008 A membrane-associated protein with Cr(VI)-reducing activity from Thermus scotoductus SA-01 FEMS Microbiol Lett 280 210 218 1:CAS:528:DC%2BD1cXjsFygs7g%3D 10.1111/j.1574-6968.2007.01063.x 18218019 (Pubitemid 351287518)
22. DJ Opperman LA Piater E van Heerden 2008 A novel chromate reductase from Thermus scotoductus SA-01 related to old yellow enzyme J Bacteriol 190 3076 3082 1:CAS:528:DC%2BD1cXkslygsbY%3D 10.1128/JB.01766-07 18263719 (Pubitemid 351508208)
23. CH Park M Keyhan B Wielinga S Fendorf A Matin 2000 Purification to homogeneity and characterization of a novel Pseudomonas putida chromate reductase Appl Environ Microbiol 66 1788 1795 1:CAS:528:DC%2BD3cXjtV2ltr0%3D 10.1128/AEM.66.5.1788-1795.2000 10788340 (Pubitemid 30253691)
24. H Schagger G von Jagow 1987 Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa Anal Biochem 166 368 379 1:STN:280:DyaL1c7jtFOlsA%3D%3D 10.1016/0003- 2697(87)90587-2 2449095 (Pubitemid 18004907)
25. V Sedlacek RJM van Spanning I Kucera 2009 Characterization of the quinone reductase activity of the ferric reductase B protein from Paracoccus denitrificans Arch Biochem Biophys 483 29 36 1:CAS:528:DC%2BD1MXitFSmtr4%3D 10.1016/j.abb.2008.12.016 19138657
26. BM Tebo AY Obraztsova 1998 Sulfate-reducing bacterium grows with Cr(VI), U(VI), Mn(IV), and Fe(III) as electron acceptors FEMS Microbiol Lett 162 193 198 1:CAS:528:DyaK1cXisFalt7s%3D 10.1111/j.1574-6968.1998.tb12998.x
27. C Viti A Pace L Giovannetti 2003 Characterization of Cr(VI)-resistant bacteria isolated from chromium-contaminated soil by tannery activity Curr Microbiol 46 1 5 1:CAS:528:DC%2BD38XoslOqtb0%3D 10.1007/s00284-002-3800-z 12432455 (Pubitemid 36919278)
28. EA Wolin MJ Wolin RS Wolfe 1963 Formation Of Methane By Bacterial Extracts J Biol Chem 238 2882 1:CAS:528:DyaF3sXkt1aqtrs%3D 14063318
29. AM Zayed N Terry 2003 Chromium in the environment: factors affecting biological remediation Plant Soil 249 139 156 1:CAS:528:DC%2BD3sXhsVyrs7w%3D 10.1023/A:1022504826342 (Pubitemid 36580052)